Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
10:56:43 (2871460): wrapper (7.7.26015): starting
10:56:43 (2871460): wrapper: running run_atlas (--nthreads 9)
[2025-11-26 10:56:43] Arguments: --nthreads 9
[2025-11-26 10:56:43] Threads: 9
[2025-11-26 10:56:43] Checking for CVMFS
[2025-11-26 10:56:44] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 10:56:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 10:56:44] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 10:56:44] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 10:56:44] 2.13.3.0 5308 8644 235000 153326 0 614 20341899 32935936 20262 16776704 0 23929125 99.407 44226078 41882 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 10:56:44] CVMFS is ok
[2025-11-26 10:56:44] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 10:56:44] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 10:56:44] Further information can be found at the LHC@home message board.
[2025-11-26 10:56:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 10:56:44] Checking for apptainer binary...
[2025-11-26 10:56:44] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 10:56:44] Running /usr/bin/apptainer --version
[2025-11-26 10:56:44] apptainer version 1.4.4-1.el9
[2025-11-26 10:56:44] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 10:56:44] c6-1-24-1.aglt2.org
[2025-11-26 10:56:44] apptainer works
[2025-11-26 10:56:44] Set ATHENA_PROC_NUMBER=9
[2025-11-26 10:56:44] Set ATHENA_CORE_NUMBER=9
[2025-11-26 10:56:44] Starting ATLAS job with PandaID=6897139547
[2025-11-26 10:56:44] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 15:58:35]  *** The last 200 lines of the pilot log: ***
[2025-11-27 15:58:35] 2025-11-27 20:57:17,773 | INFO     | monitor loop #6417: job 0:6897139547 is in state 'finished'
[2025-11-27 15:58:35] 2025-11-27 20:57:17,773 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 15:58:35] 2025-11-27 20:57:18,839 | INFO     | time since job start (104404s) is within the limit (172800.0s)
[2025-11-27 15:58:35] 2025-11-27 20:57:20,278 | INFO     | monitor loop #6418: job 0:6897139547 is in state 'finished'
[2025-11-27 15:58:35] 2025-11-27 20:57:20,278 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 15:58:35] 2025-11-27 20:57:20,860 | INFO     | time since job start (104406s) is within the limit (172800.0s)
[2025-11-27 15:58:35] 2025-11-27 20:57:22,795 | INFO     | monitor loop #6419: job 0:6897139547 is in state 'finished'
[2025-11-27 15:58:35] 2025-11-27 20:57:22,795 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 15:58:35] 2025-11-27 20:57:22,895 | INFO     | time since job start (104408s) is within the limit (172800.0s)
[2025-11-27 15:58:35] 2025-11-27 20:57:24,902 | INFO     | time since job start (104410s) is within the limit (172800.0s)
[2025-11-27 15:58:35] 2025-11-27 20:57:25,312 | INFO     | monitor loop #6420: job 0:6897139547 is in state 'finished'
[2025-11-27 15:58:35] 2025-11-27 20:57:25,312 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 15:58:35] 2025-11-27 20:57:26,520 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 15:58:35] 2025-11-27 20:57:26,524 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2942.0019285714284
[2025-11-27 15:58:35] 2025-11-27 20:57:26,556 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6897139547/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 15:58:35] 2025-11-27 20:57:26,563 | INFO     | extracted standard info from prmon json
[2025-11-27 15:58:35] 2025-11-27 20:57:26,563 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 15:58:35] 2025-11-27 20:57:26,563 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 15:58:35] 2025-11-27 20:57:26,652 [wrapper] supervise_pilot (15 min periods counter: 117)
[2025-11-27 15:58:35] 2025-11-27 20:57:26,941 | INFO     | fitting pss+swap vs Time
[2025-11-27 15:58:35] 2025-11-27 20:57:27,085 | INFO     | sum of square deviations: 1550607148284.1165
[2025-11-27 15:58:35] 2025-11-27 20:57:27,762 | INFO     | sum of deviations: 5223957824977.023
[2025-11-27 15:58:35] 2025-11-27 20:57:27,762 | INFO     | mean x: 1764224807.9239767
[2025-11-27 15:58:35] 2025-11-27 20:57:27,762 | INFO     | mean y: 3047116.338596491
[2025-11-27 15:58:35] 2025-11-27 20:57:27,762 | INFO     | intersect: -5940583416.109046
[2025-11-27 15:58:35] 2025-11-27 20:57:27,764 | INFO     | chi2: 22.047451157119948
[2025-11-27 15:58:35] 2025-11-27 20:57:27,765 | INFO     | sum of square deviations: 1537047319270.0142
[2025-11-27 15:58:35] 2025-11-27 20:57:27,997 | INFO     | sum of deviations: 5818077452395.443
[2025-11-27 15:58:35] 2025-11-27 20:57:27,997 | INFO     | mean x: 1764224655.4304986
[2025-11-27 15:58:35] 2025-11-27 20:57:27,997 | INFO     | mean y: 3053796.8645161293
[2025-11-27 15:58:35] 2025-11-27 20:57:27,998 | INFO     | intersect: -6674942098.274969
[2025-11-27 15:58:35] 2025-11-27 20:57:28,006 | INFO     | chi2: 18.844145791521015
[2025-11-27 15:58:35] 2025-11-27 20:57:28,006 | INFO     | current chi2=18.844145791521015 (change=14.529141453906636 %)
[2025-11-27 15:58:35] 2025-11-27 20:57:28,006 | INFO     | right removable region: 1704
[2025-11-27 15:58:35] 2025-11-27 20:57:28,026 | INFO     | sum of square deviations: 1537044894882.1519
[2025-11-27 15:58:35] 2025-11-27 20:57:28,103 | INFO     | monitor loop #6421: job 0:6897139547 is in state 'finished'
[2025-11-27 15:58:35] 2025-11-27 20:57:28,103 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 15:58:35] 2025-11-27 20:57:28,232 | INFO     | sum of deviations: 4572368675844.036
[2025-11-27 15:58:35] 2025-11-27 20:57:28,232 | INFO     | mean x: 1764224960.431085
[2025-11-27 15:58:35] 2025-11-27 20:57:28,232 | INFO     | mean y: 3054441.7917888565
[2025-11-27 15:58:35] 2025-11-27 20:57:28,232 | INFO     | intersect: -5245124692.77784
[2025-11-27 15:58:35] 2025-11-27 20:57:28,255 | INFO     | chi2: 18.791592916511014
[2025-11-27 15:58:35] 2025-11-27 20:57:28,256 | INFO     | current chi2=18.791592916511014 (change=14.767504041198409 %)
[2025-11-27 15:58:35] 2025-11-27 20:57:28,256 | INFO     | left removable region: 10
[2025-11-27 15:58:35] 2025-11-27 20:57:28,257 | INFO     | sum of square deviations: 1507489793517.004
[2025-11-27 15:58:35] 2025-11-27 20:57:28,446 | INFO     | sum of deviations: 4940704109376.715
[2025-11-27 15:58:35] 2025-11-27 20:57:28,447 | INFO     | mean x: 1764224929.9456906
[2025-11-27 15:58:35] 2025-11-27 20:57:28,447 | INFO     | mean y: 3066275.7579693035
[2025-11-27 15:58:35] 2025-11-27 20:57:28,447 | INFO     | intersect: -5779071287.4501505
[2025-11-27 15:58:35] 2025-11-27 20:57:28,448 | INFO     | chi2: 14.130152970361248
[2025-11-27 15:58:35] 2025-11-27 20:57:28,449 | INFO     | current memory leak: 3.28 B/s (using 1694 data points, chi2=14.13)
[2025-11-27 15:58:35] 2025-11-27 20:57:28,463 | INFO     | could have reported an average CPU frequency of 2898 MHz (60 samples)
[2025-11-27 15:58:35] 2025-11-27 20:57:28,463 | INFO     | ..............................
[2025-11-27 15:58:35] 2025-11-27 20:57:28,463 | INFO     | . Timing measurements:
[2025-11-27 15:58:35] 2025-11-27 20:57:28,464 | INFO     | . get job = 0 s
[2025-11-27 15:58:35] 2025-11-27 20:57:28,464 | INFO     | . initial setup = 3 s
[2025-11-27 15:58:35] 2025-11-27 20:57:28,464 | INFO     | . payload setup = 10 s
[2025-11-27 15:58:35] 2025-11-27 20:57:28,464 | INFO     | . stage-in = 0 s
[2025-11-27 15:58:35] 2025-11-27 20:57:28,464 | INFO     | . payload execution = 104314 s
[2025-11-27 15:58:35] 2025-11-27 20:57:28,464 | INFO     | . stage-out = 11 s
[2025-11-27 15:58:35] 2025-11-27 20:57:28,464 | INFO     | . log creation = 3 s
[2025-11-27 15:58:35] 2025-11-27 20:57:28,464 | INFO     | ..............................
[2025-11-27 15:58:35] 2025-11-27 20:57:28,962 | INFO     | 
[2025-11-27 15:58:35] 2025-11-27 20:57:28,962 | INFO     | job summary report
[2025-11-27 15:58:35] 2025-11-27 20:57:28,962 | INFO     | --------------------------------------------------
[2025-11-27 15:58:35] 2025-11-27 20:57:28,962 | INFO     | PanDA job id: 6897139547
[2025-11-27 15:58:35] 2025-11-27 20:57:28,962 | INFO     | task id: 47556161
[2025-11-27 15:58:35] 2025-11-27 20:57:28,962 | INFO     | errors: (none)
[2025-11-27 15:58:35] 2025-11-27 20:57:28,962 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 15:58:35] 2025-11-27 20:57:28,962 | INFO     | pilot state: finished 
[2025-11-27 15:58:35] 2025-11-27 20:57:28,962 | INFO     | transexitcode: 0
[2025-11-27 15:58:35] 2025-11-27 20:57:28,962 | INFO     | exeerrorcode: 0
[2025-11-27 15:58:35] 2025-11-27 20:57:28,963 | INFO     | exeerrordiag: 
[2025-11-27 15:58:35] 2025-11-27 20:57:28,963 | INFO     | exitcode: 0
[2025-11-27 15:58:35] 2025-11-27 20:57:28,963 | INFO     | exitmsg: OK
[2025-11-27 15:58:35] 2025-11-27 20:57:28,963 | INFO     | cpuconsumptiontime: 254665 s
[2025-11-27 15:58:35] 2025-11-27 20:57:28,963 | INFO     | nevents: 1000
[2025-11-27 15:58:35] 2025-11-27 20:57:28,963 | INFO     | neventsw: 0
[2025-11-27 15:58:35] 2025-11-27 20:57:28,963 | INFO     | pid: 2905168
[2025-11-27 15:58:35] 2025-11-27 20:57:28,963 | INFO     | pgrp: 2905168
[2025-11-27 15:58:35] 2025-11-27 20:57:28,963 | INFO     | corecount: 9
[2025-11-27 15:58:35] 2025-11-27 20:57:28,963 | INFO     | event service: False
[2025-11-27 15:58:35] 2025-11-27 20:57:28,963 | INFO     | sizes: {0: 2284094, 1: 2284293, 12: 2284293, 13: 2284583, 22: 2284639, 104328: 2357034, 104330: 2357161, 104344: 2366267, 104385: 2366457}
[2025-11-27 15:58:35] 2025-11-27 20:57:28,963 | INFO     | --------------------------------------------------
[2025-11-27 15:58:35] 2025-11-27 20:57:28,963 | INFO     | 
[2025-11-27 15:58:35] 2025-11-27 20:57:28,963 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-27 15:58:35] 2025-11-27 20:57:29,175 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 15:58:35] 2025-11-27 20:57:29,175 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 15:58:35] 2025-11-27 20:57:29,175 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 15:58:35] 2025-11-27 20:57:29,175 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 15:58:35] 2025-11-27 20:57:29,175 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 15:58:35] 2025-11-27 20:57:29,175 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 15:58:35] 2025-11-27 20:57:29,175 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 15:58:35] 2025-11-27 20:57:29,175 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 15:58:35] 2025-11-27 20:57:29,175 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 15:58:35] 2025-11-27 20:57:29,175 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 15:58:35] 2025-11-27 20:57:29,175 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 15:58:35] 2025-11-27 20:57:29,176 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 15:58:35] 2025-11-27 20:57:29,176 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 15:58:35] 2025-11-27 20:57:29,176 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 15:58:35] 2025-11-27 20:57:29,181 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 15:58:35] 2025-11-27 20:57:29,181 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 15:58:35] 2025-11-27 20:57:29,181 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 15:58:35] 2025-11-27 20:57:29,182 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 15:58:35] 2025-11-27 20:57:29,182 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 15:58:35] 2025-11-27 20:57:29,182 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 15:58:35] 2025-11-27 20:57:29,182 | INFO     | job 6897139547 has completed (purged errors)
[2025-11-27 15:58:35] 2025-11-27 20:57:29,182 | INFO     | overall cleanup function is called
[2025-11-27 15:58:35] 2025-11-27 20:57:29,447 | INFO     | PID=2887406 has CPU usage=3.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 15:58:35] 2025-11-27 20:57:29,447 | INFO     | .. there are 32 such processes running
[2025-11-27 15:58:35] 2025-11-27 20:57:30,247 | INFO     | --- collectZombieJob: --- 10, [2905168]
[2025-11-27 15:58:35] 2025-11-27 20:57:30,247 | INFO     | zombie collector waiting for pid 2905168
[2025-11-27 15:58:35] 2025-11-27 20:57:30,247 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 15:58:35] 2025-11-27 20:57:30,247 | INFO     | collected zombie processes
[2025-11-27 15:58:35] 2025-11-27 20:57:30,247 | INFO     | will attempt to kill all subprocesses of pid=2905168
[2025-11-27 15:58:35] 2025-11-27 20:57:32,104 | INFO     | process IDs to be killed: [2905168] (in reverse order)
[2025-11-27 15:58:35] 2025-11-27 20:57:32,539 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 15:58:35] 2025-11-27 20:57:32,540 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 15:58:35] 2025-11-27 20:57:32,569 | INFO     | did not find any defunct processes belonging to 2905168
[2025-11-27 15:58:35] 2025-11-27 20:57:32,758 | INFO     | did not find any defunct processes belonging to 2905168
[2025-11-27 15:58:35] 2025-11-27 20:57:32,790 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 15:58:35] 2025-11-27 20:57:32,791 | INFO     | ready for new job
[2025-11-27 15:58:35] 2025-11-27 20:57:32,791 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 15:58:35] 2025-11-27 20:57:32,801 | INFO     | ***************************************
[2025-11-27 15:58:35] 2025-11-27 20:57:32,801 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 15:58:35] 2025-11-27 20:57:32,801 | INFO     | ***************************************
[2025-11-27 15:58:35] 2025-11-27 20:57:32,801 | INFO     | 
[2025-11-27 15:58:35] 2025-11-27 20:57:32,808 | INFO     | architecture information:
[2025-11-27 15:58:35] 2025-11-27 20:57:32,812 | INFO     | executing command: cat /etc/os-release
[2025-11-27 15:58:35] 2025-11-27 20:57:32,889 | INFO     | cat /etc/os-release:
[2025-11-27 15:58:35] NAME="CentOS Linux"
[2025-11-27 15:58:35] VERSION="7 (Core)"
[2025-11-27 15:58:35] ID="centos"
[2025-11-27 15:58:35] ID_LIKE="rhel fedora"
[2025-11-27 15:58:35] VERSION_ID="7"
[2025-11-27 15:58:35] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 15:58:35] ANSI_COLOR="0;31"
[2025-11-27 15:58:35] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 15:58:35] HOME_URL="https://www.centos.org/"
[2025-11-27 15:58:35] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 15:58:35] 
[2025-11-27 15:58:35] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 15:58:35] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 15:58:35] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 15:58:35] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 15:58:35] 
[2025-11-27 15:58:35] 2025-11-27 20:57:32,889 | INFO     | ***************************************
[2025-11-27 15:58:35] 2025-11-27 20:57:33,394 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-27 15:58:35] 2025-11-27 20:57:33,471 | INFO     | sufficient remaining disk space (69881298944 B)
[2025-11-27 15:58:35] 2025-11-27 20:57:33,472 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 15:58:35] 2025-11-27 20:57:33,472 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 15:58:35] 2025-11-27 20:57:33,472 | INFO     | update_server=False
[2025-11-27 15:58:35] 2025-11-27 20:57:33,472 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 15:58:35] 2025-11-27 20:57:33,664 | INFO     | all data control threads have been joined
[2025-11-27 15:58:35] 2025-11-27 20:57:33,832 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 15:58:35] 2025-11-27 20:57:34,003 | INFO     | all payload control threads have been joined
[2025-11-27 15:58:35] 2025-11-27 20:57:34,003 | INFO     | all job control threads have been joined
[2025-11-27 15:58:35] 2025-11-27 20:57:34,220 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 15:58:35] 2025-11-27 20:57:34,220 | INFO     | aborting loop
[2025-11-27 15:58:35] 2025-11-27 20:57:34,482 | INFO     | [job] retrieve thread has finished
[2025-11-27 15:58:35] 2025-11-27 20:57:34,493 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 15:58:35] 2025-11-27 20:57:34,622 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 15:58:35] 2025-11-27 20:57:34,682 | INFO     | [data] control thread has finished
[2025-11-27 15:58:35] 2025-11-27 20:57:34,838 | INFO     | [job] queue monitor thread has finished
[2025-11-27 15:58:35] 2025-11-27 20:57:34,914 | INFO     | [payload] validate_post thread has finished
[2025-11-27 15:58:35] 2025-11-27 20:57:35,009 | INFO     | [payload] control thread has finished
[2025-11-27 15:58:35] 2025-11-27 20:57:35,017 | INFO     | [job] control thread has finished
[2025-11-27 15:58:35] 2025-11-27 20:57:35,018 | INFO     | [data] copytool_in thread has finished
[2025-11-27 15:58:35] 2025-11-27 20:57:35,023 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 15:58:35] 2025-11-27 20:57:35,023 | INFO     | [job] validate thread has finished
[2025-11-27 15:58:35] 2025-11-27 20:57:35,036 | INFO     | [payload] failed_post thread has finished
[2025-11-27 15:58:35] 2025-11-27 20:57:35,175 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 15:58:35] 2025-11-27 20:57:35,250 | INFO     | [job] job monitor thread has finished
[2025-11-27 15:58:35] 2025-11-27 20:57:35,545 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 15:58:35] 2025-11-27 20:57:35,784 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 15:58:35] 2025-11-27 20:57:36,506 | INFO     | [data] copytool_out thread has finished
[2025-11-27 15:58:35] 2025-11-27 20:57:39,793 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 15:58:35] 2025-11-27 20:58:04,002 | INFO     | PID=2887406 has CPU usage=2.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 15:58:35] 2025-11-27 20:58:04,003 | INFO     | .. there are 32 such processes running
[2025-11-27 15:58:35] 2025-11-27 20:58:04,021 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 15:58:35] 2025-11-27 20:58:04,021 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 15:58:35] 2025-11-27 20:58:04,021 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 15:58:35] 2025-11-27 20:58:22,971 | INFO     | [monitor] cgroup control has ended
[2025-11-27 15:58:35] 2025-11-27 20:58:24,981 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140515640153920)>', '<ExcThread(monitor, started 140514980505344)>']
[2025-11-27 15:58:35] 2025-11-27 20:58:25,293 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 15:58:35] 2025-11-27 20:58:25,293 | INFO     | [monitor] control thread has ended
[2025-11-27 15:58:35] 2025-11-27 20:58:30,017 | INFO     | all workflow threads have been joined
[2025-11-27 15:58:35] 2025-11-27 20:58:30,017 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 15:58:35] 2025-11-27 20:58:30,017 | INFO     | traces error code: 0
[2025-11-27 15:58:35] 2025-11-27 20:58:30,018 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 15:58:35] 2025-11-27 20:58:34,495 [wrapper] ==== pilot stdout END ====
[2025-11-27 15:58:35] 2025-11-27 20:58:34,539 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 15:58:35] 2025-11-27 20:58:34,578 [wrapper] pilotpid: 2887406
[2025-11-27 15:58:35] 2025-11-27 20:58:34,612 [wrapper] Pilot exit status: 0
[2025-11-27 15:58:35] 2025-11-27 20:58:34,746 [wrapper] pandaids: 6897139547
[2025-11-27 15:58:35] 2025-11-27 20:58:34,878 [wrapper] cleanup supervisor_pilot  610492 2887407
[2025-11-27 15:58:35] 2025-11-27 20:58:34,932 [wrapper] Test setup, not cleaning
[2025-11-27 15:58:35] 2025-11-27 20:58:34,945 [wrapper] apfmon messages muted
[2025-11-27 15:58:35] 2025-11-27 20:58:34,960 [wrapper] ==== wrapper stdout END ====
[2025-11-27 15:58:35] 2025-11-27 20:58:34,974 [wrapper] ==== wrapper stderr END ====
[2025-11-27 15:58:35]  *** Error codes and diagnostics ***
[2025-11-27 15:58:35]     "exeErrorCode": 0,
[2025-11-27 15:58:35]     "exeErrorDiag": "",
[2025-11-27 15:58:35]     "pilotErrorCode": 0,
[2025-11-27 15:58:35]     "pilotErrorDiag": "",
[2025-11-27 15:58:35]  *** Listing of results directory ***
[2025-11-27 15:58:35] total 1322000
[2025-11-27 15:58:35] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 11:48 pilot3.tar.gz
[2025-11-27 15:58:35] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 11:55 queuedata.json
[2025-11-27 15:58:35] -rwx------. 1 boincer umatlas     36292 Nov 25 11:56 runpilot2-wrapper.sh
[2025-11-27 15:58:35] -rw-r--r--. 1 boincer umatlas       100 Nov 26 10:56 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 15:58:35] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 10:56 run_atlas
[2025-11-27 15:58:35] -rw-r--r--. 1 boincer umatlas       105 Nov 26 10:56 job.xml
[2025-11-27 15:58:35] -rw-r--r--. 2 boincer umatlas 408676587 Nov 26 10:56 EVNT.47483658._002185.pool.root.1
[2025-11-27 15:58:35] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 10:56 start_atlas.sh
[2025-11-27 15:58:35] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 10:56 shared
[2025-11-27 15:58:35] -rw-r--r--. 2 boincer umatlas    590110 Nov 26 10:56 input.tar.gz
[2025-11-27 15:58:35] -rw-r--r--. 1 boincer umatlas         0 Nov 26 10:56 boinc_lockfile
[2025-11-27 15:58:35] -rw-r--r--. 1 boincer umatlas      2786 Nov 26 10:56 pandaJob.out
[2025-11-27 15:58:35] -rw-------. 1 boincer umatlas        57 Nov 26 10:56 setup.sh.local
[2025-11-27 15:58:35] -rw-------. 1 boincer umatlas    991855 Nov 26 10:57 agis_schedconf.cvmfs.json
[2025-11-27 15:58:35] drwx------. 5 boincer umatlas      4096 Nov 26 10:57 pilot3
[2025-11-27 15:58:35] -rw-r--r--. 1 boincer umatlas       533 Nov 27 15:20 boinc_task_state.xml
[2025-11-27 15:58:35] -rw-------. 1 boincer umatlas 908871248 Nov 27 15:54 HITS.47556161._001684.pool.root.1
[2025-11-27 15:58:35] -rw-------. 1 boincer umatlas      1059 Nov 27 15:56 memory_monitor_summary.json
[2025-11-27 15:58:35] -rw-------. 1 boincer umatlas   1516240 Nov 27 15:56 agis_ddmendpoints.agis.ALL.json
[2025-11-27 15:58:35] -rw-------. 1 boincer umatlas   2798717 Nov 27 15:56 log.47556161._001684.job.log.tgz.1
[2025-11-27 15:58:35] -rw-r--r--. 1 boincer umatlas      6842 Nov 27 15:56 init_data.xml
[2025-11-27 15:58:35] -rw-------. 1 boincer umatlas      7954 Nov 27 15:57 heartbeat.json
[2025-11-27 15:58:35] -rw-------. 1 boincer umatlas        95 Nov 27 15:58 pilot_heartbeat.json
[2025-11-27 15:58:35] -rw-------. 1 boincer umatlas      4824 Nov 27 15:58 pilotlog.txt
[2025-11-27 15:58:35] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 15:58 boinc_mmap_file
[2025-11-27 15:58:35] -rw-r--r--. 1 boincer umatlas        29 Nov 27 15:58 wrapper_checkpoint.txt
[2025-11-27 15:58:35] -rw-------. 1 boincer umatlas  13334776 Nov 27 15:58 log.47556161._001684.job.log.1
[2025-11-27 15:58:35] -rw-------. 1 boincer umatlas       353 Nov 27 15:58 output.list
[2025-11-27 15:58:35] -rw-r--r--. 1 boincer umatlas       620 Nov 27 15:58 runtime_log
[2025-11-27 15:58:35] -rw-------. 1 boincer umatlas  16148480 Nov 27 15:58 result.tar.gz
[2025-11-27 15:58:35] -rw-r--r--. 1 boincer umatlas      9349 Nov 27 15:58 runtime_log.err
[2025-11-27 15:58:35] -rw-------. 1 boincer umatlas       663 Nov 27 15:58 NaKNDmSWBi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmZWJKDmKAHfwm.diag
[2025-11-27 15:58:35] -rw-r--r--. 1 boincer umatlas     21861 Nov 27 15:58 stderr.txt
[2025-11-27 15:58:35] HITS file was successfully produced:
[2025-11-27 15:58:35] -rw-------. 1 boincer umatlas 908871248 Nov 27 15:54 shared/HITS.pool.root.1
[2025-11-27 15:58:35]  *** Contents of shared directory: ***
[2025-11-27 15:58:35] total 1303044
[2025-11-27 15:58:35] -rw-r--r--. 2 boincer umatlas 408676587 Nov 26 10:56 ATLAS.root_0
[2025-11-27 15:58:35] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 10:56 start_atlas.sh
[2025-11-27 15:58:35] -rw-r--r--. 2 boincer umatlas    590110 Nov 26 10:56 input.tar.gz
[2025-11-27 15:58:35] -rw-------. 1 boincer umatlas 908871248 Nov 27 15:54 HITS.pool.root.1
[2025-11-27 15:58:35] -rw-------. 1 boincer umatlas  16148480 Nov 27 15:58 result.tar.gz
15:58:37 (2871460): run_atlas exited; CPU time 257282.699586
15:58:37 (2871460): called boinc_finish(0)

</stderr_txt>
]]>

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