Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
11:18:42 (3658822): wrapper (7.7.26015): starting
11:18:42 (3658822): wrapper: running run_atlas (--nthreads 11)
[2025-11-26 11:18:42] Arguments: --nthreads 11
[2025-11-26 11:18:42] Threads: 11
[2025-11-26 11:18:42] Checking for CVMFS
[2025-11-26 11:18:42] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 11:18:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 11:18:42] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 11:18:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 11:18:42] 2.13.3.0 12763 30234 193408 153326 1 952 22981006 40960001 50887 16776704 0 257930350 99.743 158732720 35838 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 11:18:42] CVMFS is ok
[2025-11-26 11:18:42] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 11:18:42] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 11:18:42] Further information can be found at the LHC@home message board.
[2025-11-26 11:18:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 11:18:42] Checking for apptainer binary...
[2025-11-26 11:18:42] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 11:18:42] Running /usr/bin/apptainer --version
[2025-11-26 11:18:42] apptainer version 1.4.4-1.el9
[2025-11-26 11:18:42] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 11:18:43] c7-2-17.aglt2.org
[2025-11-26 11:18:43] apptainer works
[2025-11-26 11:18:43] Set ATHENA_PROC_NUMBER=11
[2025-11-26 11:18:43] Set ATHENA_CORE_NUMBER=11
[2025-11-26 11:18:43] Starting ATLAS job with PandaID=6897139608
[2025-11-26 11:18:43] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 17:42:43]  *** The last 200 lines of the pilot log: ***
[2025-11-26 17:42:43] 2025-11-26 22:41:34,871 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-26 17:42:43] 2025-11-26 22:41:36,855 | INFO     | time since job start (22958s) is within the limit (172800.0s)
[2025-11-26 17:42:43] 2025-11-26 22:41:38,863 | INFO     | time since job start (22960s) is within the limit (172800.0s)
[2025-11-26 17:42:43] 2025-11-26 22:41:41,027 | INFO     | PID=3663558 has CPU usage=20.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-26 17:42:43] 2025-11-26 22:41:41,027 | INFO     | .. there are 78 such processes running
[2025-11-26 17:42:43] 2025-11-26 22:41:42,028 | INFO     | time since job start (22964s) is within the limit (172800.0s)
[2025-11-26 17:42:43] 2025-11-26 22:41:42,583 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-26 17:42:43] 2025-11-26 22:41:42,604 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3361.0456145833346
[2025-11-26 17:42:43] 2025-11-26 22:41:42,619 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6897139608/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 17:42:43] 2025-11-26 22:41:42,619 | INFO     | extracted standard info from prmon json
[2025-11-26 17:42:43] 2025-11-26 22:41:42,619 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 17:42:43] 2025-11-26 22:41:42,619 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 17:42:43] 2025-11-26 22:41:42,625 | INFO     | fitting pss+swap vs Time
[2025-11-26 17:42:43] 2025-11-26 22:41:42,625 | INFO     | sum of square deviations: 16481839121.308521
[2025-11-26 17:42:43] 2025-11-26 22:41:42,628 | INFO     | sum of deviations: 7692493881359.194
[2025-11-26 17:42:43] 2025-11-26 22:41:42,628 | INFO     | mean x: 1764185408.3882978
[2025-11-26 17:42:43] 2025-11-26 22:41:42,629 | INFO     | mean y: 6310232.409574468
[2025-11-26 17:42:43] 2025-11-26 22:41:42,629 | INFO     | intersect: -823383929153.25
[2025-11-26 17:42:43] 2025-11-26 22:41:42,629 | INFO     | chi2: 70.66527649238789
[2025-11-26 17:42:43] 2025-11-26 22:41:42,629 | INFO     | sum of square deviations: 15833187673.239965
[2025-11-26 17:42:43] 2025-11-26 22:41:42,632 | INFO     | sum of deviations: 8000362144460.3545
[2025-11-26 17:42:43] 2025-11-26 22:41:42,632 | INFO     | mean x: 1764185255.9137466
[2025-11-26 17:42:43] 2025-11-26 22:41:42,632 | INFO     | mean y: 6382568.479784367
[2025-11-26 17:42:43] 2025-11-26 22:41:42,632 | INFO     | intersect: -891419982640.4694
[2025-11-26 17:42:43] 2025-11-26 22:41:42,633 | INFO     | chi2: 111.56961641922383
[2025-11-26 17:42:43] 2025-11-26 22:41:42,633 | INFO     | current chi2=111.56961641922383 (change=-57.88463861914159 %)
[2025-11-26 17:42:43] 2025-11-26 22:41:42,633 | INFO     | right removable region: 370
[2025-11-26 17:42:43] 2025-11-26 22:41:42,633 | INFO     | sum of square deviations: 15832800084.884106
[2025-11-26 17:42:43] 2025-11-26 22:41:42,636 | INFO     | sum of deviations: 7411147605886.839
[2025-11-26 17:42:43] 2025-11-26 22:41:42,636 | INFO     | mean x: 1764185560.9083557
[2025-11-26 17:42:43] 2025-11-26 22:41:42,636 | INFO     | mean y: 6376245.083557951
[2025-11-26 17:42:43] 2025-11-26 22:41:42,636 | INFO     | intersect: -825788146894.8071
[2025-11-26 17:42:43] 2025-11-26 22:41:42,636 | INFO     | chi2: 67.2769706224197
[2025-11-26 17:42:43] 2025-11-26 22:41:42,637 | INFO     | current chi2=67.2769706224197 (change=4.794866783452242 %)
[2025-11-26 17:42:43] 2025-11-26 22:41:42,637 | INFO     | left removable region: 10
[2025-11-26 17:42:43] 2025-11-26 22:41:42,637 | INFO     | sum of square deviations: 14465859171.197142
[2025-11-26 17:42:43] 2025-11-26 22:41:42,640 | INFO     | sum of deviations: 7551810741993.769
[2025-11-26 17:42:43] 2025-11-26 22:41:42,640 | INFO     | mean x: 1764185530.4527779
[2025-11-26 17:42:43] 2025-11-26 22:41:42,640 | INFO     | mean y: 6509266.780555556
[2025-11-26 17:42:43] 2025-11-26 22:41:42,640 | INFO     | intersect: -920975444316.0509
[2025-11-26 17:42:43] 2025-11-26 22:41:42,640 | INFO     | chi2: 112.07211289224357
[2025-11-26 17:42:43] 2025-11-26 22:41:42,641 | INFO     | current memory leak: 522.04 B/s (using 360 data points, chi2=112.07)
[2025-11-26 17:42:43] 2025-11-26 22:41:42,641 | INFO     | could have reported an average CPU frequency of 3338 MHz (16 samples)
[2025-11-26 17:42:43] 2025-11-26 22:41:42,641 | INFO     | ..............................
[2025-11-26 17:42:43] 2025-11-26 22:41:42,641 | INFO     | . Timing measurements:
[2025-11-26 17:42:43] 2025-11-26 22:41:42,641 | INFO     | . get job = 0 s
[2025-11-26 17:42:43] 2025-11-26 22:41:42,642 | INFO     | . initial setup = 2 s
[2025-11-26 17:42:43] 2025-11-26 22:41:42,642 | INFO     | . payload setup = 7 s
[2025-11-26 17:42:43] 2025-11-26 22:41:42,642 | INFO     | . stage-in = 0 s
[2025-11-26 17:42:43] 2025-11-26 22:41:42,642 | INFO     | . payload execution = 22921 s
[2025-11-26 17:42:43] 2025-11-26 22:41:42,642 | INFO     | . stage-out = 3 s
[2025-11-26 17:42:43] 2025-11-26 22:41:42,642 | INFO     | . log creation = 0 s
[2025-11-26 17:42:43] 2025-11-26 22:41:42,642 | INFO     | ..............................
[2025-11-26 17:42:43] 2025-11-26 22:41:42,650 | INFO     | sufficient remaining disk space (117973188608 B)
[2025-11-26 17:42:43] 2025-11-26 22:41:42,651 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-11-26 17:42:43] 2025-11-26 22:41:42,654 | INFO     | size of work directory /tmp/boinchome/slots/0/PanDA_Pilot-6897139608: 10002749 B (within 2537553920 B limit)
[2025-11-26 17:42:43] 2025-11-26 22:41:42,654 | INFO     | pfn file=/tmp/boinchome/slots/0/PanDA_Pilot-6897139608/HITS.47556161._001731.pool.root.1 does not exist (skip from workdir size calculation)
[2025-11-26 17:42:43] 2025-11-26 22:41:42,654 | INFO     | total size of present files: 0 B (workdir size: 10002749 B)
[2025-11-26 17:42:43] 2025-11-26 22:41:42,654 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/0/PanDA_Pilot-6897139608/HITS.47556161._001731.pool.root.1 since it does not exist
[2025-11-26 17:42:43] 2025-11-26 22:41:43,161 | INFO     | 
[2025-11-26 17:42:43] 2025-11-26 22:41:43,161 | INFO     | job summary report
[2025-11-26 17:42:43] 2025-11-26 22:41:43,161 | INFO     | --------------------------------------------------
[2025-11-26 17:42:43] 2025-11-26 22:41:43,161 | INFO     | PanDA job id: 6897139608
[2025-11-26 17:42:43] 2025-11-26 22:41:43,161 | INFO     | task id: 47556161
[2025-11-26 17:42:43] 2025-11-26 22:41:43,161 | INFO     | errors: (none)
[2025-11-26 17:42:43] 2025-11-26 22:41:43,162 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 17:42:43] 2025-11-26 22:41:43,162 | INFO     | pilot state: finished 
[2025-11-26 17:42:43] 2025-11-26 22:41:43,162 | INFO     | transexitcode: 0
[2025-11-26 17:42:43] 2025-11-26 22:41:43,162 | INFO     | exeerrorcode: 0
[2025-11-26 17:42:43] 2025-11-26 22:41:43,162 | INFO     | exeerrordiag: 
[2025-11-26 17:42:43] 2025-11-26 22:41:43,162 | INFO     | exitcode: 0
[2025-11-26 17:42:43] 2025-11-26 22:41:43,162 | INFO     | exitmsg: OK
[2025-11-26 17:42:43] 2025-11-26 22:41:43,162 | INFO     | cpuconsumptiontime: 178972 s
[2025-11-26 17:42:43] 2025-11-26 22:41:43,162 | INFO     | nevents: 1000
[2025-11-26 17:42:43] 2025-11-26 22:41:43,162 | INFO     | neventsw: 0
[2025-11-26 17:42:43] 2025-11-26 22:41:43,162 | INFO     | pid: 3672321
[2025-11-26 17:42:43] 2025-11-26 22:41:43,162 | INFO     | pgrp: 3672321
[2025-11-26 17:42:43] 2025-11-26 22:41:43,162 | INFO     | corecount: 11
[2025-11-26 17:42:43] 2025-11-26 22:41:43,162 | INFO     | event service: False
[2025-11-26 17:42:43] 2025-11-26 22:41:43,162 | INFO     | sizes: {0: 2284088, 1: 2284287, 7: 2284549, 11: 2284577, 22933: 2320431, 22937: 2329425, 22940: 2329609, 22948: 2329883}
[2025-11-26 17:42:43] 2025-11-26 22:41:43,162 | INFO     | --------------------------------------------------
[2025-11-26 17:42:43] 2025-11-26 22:41:43,162 | INFO     | 
[2025-11-26 17:42:43] 2025-11-26 22:41:43,163 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-26 17:42:43] 2025-11-26 22:41:43,203 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 17:42:43] 2025-11-26 22:41:43,203 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 17:42:43] 2025-11-26 22:41:43,204 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 17:42:43] 2025-11-26 22:41:43,204 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 17:42:43] 2025-11-26 22:41:43,204 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 17:42:43] 2025-11-26 22:41:43,204 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 17:42:43] 2025-11-26 22:41:43,204 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 17:42:43] 2025-11-26 22:41:43,204 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 17:42:43] 2025-11-26 22:41:43,204 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 17:42:43] 2025-11-26 22:41:43,204 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 17:42:43] 2025-11-26 22:41:43,206 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 17:42:43] 2025-11-26 22:41:43,206 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 17:42:43] 2025-11-26 22:41:43,206 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 17:42:43] 2025-11-26 22:41:43,206 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 17:42:43] 2025-11-26 22:41:43,206 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 17:42:43] 2025-11-26 22:41:43,206 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 17:42:43] 2025-11-26 22:41:43,207 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 17:42:43] 2025-11-26 22:41:43,208 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 17:42:43] 2025-11-26 22:41:43,208 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 17:42:43] 2025-11-26 22:41:43,208 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 17:42:43] 2025-11-26 22:41:43,209 | INFO     | job 6897139608 has completed (purged errors)
[2025-11-26 17:42:43] 2025-11-26 22:41:43,209 | INFO     | overall cleanup function is called
[2025-11-26 17:42:43] 2025-11-26 22:41:43,455 | INFO     | number of running child processes to parent process 3672321: 1
[2025-11-26 17:42:43] 2025-11-26 22:41:43,455 | INFO     | maximum number of monitored processes: 19
[2025-11-26 17:42:43] 2025-11-26 22:41:43,455 | INFO     | aborting job monitoring since job object (job id=6897139608) has expired
[2025-11-26 17:42:43] 2025-11-26 22:41:44,241 | INFO     | --- collectZombieJob: --- 10, [3672321]
[2025-11-26 17:42:43] 2025-11-26 22:41:44,241 | INFO     | zombie collector waiting for pid 3672321
[2025-11-26 17:42:43] 2025-11-26 22:41:44,241 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 17:42:43] 2025-11-26 22:41:44,241 | INFO     | collected zombie processes
[2025-11-26 17:42:43] 2025-11-26 22:41:44,241 | INFO     | will attempt to kill all subprocesses of pid=3672321
[2025-11-26 17:42:43] 2025-11-26 22:41:44,934 | INFO     | process IDs to be killed: [3672321] (in reverse order)
[2025-11-26 17:42:43] 2025-11-26 22:41:45,163 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 17:42:43] 2025-11-26 22:41:45,164 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 17:42:43] 2025-11-26 22:41:45,194 | INFO     | did not find any defunct processes belonging to 3672321
[2025-11-26 17:42:43] 2025-11-26 22:41:45,224 | INFO     | did not find any defunct processes belonging to 3672321
[2025-11-26 17:42:43] 2025-11-26 22:41:45,226 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 17:42:43] 2025-11-26 22:41:45,226 | INFO     | ready for new job
[2025-11-26 17:42:43] 2025-11-26 22:41:45,226 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 17:42:43] 2025-11-26 22:41:45,229 | INFO     | ***************************************
[2025-11-26 17:42:43] 2025-11-26 22:41:45,230 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 17:42:43] 2025-11-26 22:41:45,230 | INFO     | ***************************************
[2025-11-26 17:42:43] 2025-11-26 22:41:45,230 | INFO     | 
[2025-11-26 17:42:43] 2025-11-26 22:41:45,253 | INFO     | architecture information:
[2025-11-26 17:42:43] 2025-11-26 22:41:45,253 | INFO     | executing command: cat /etc/os-release
[2025-11-26 17:42:43] 2025-11-26 22:41:45,270 | INFO     | cat /etc/os-release:
[2025-11-26 17:42:43] NAME="CentOS Linux"
[2025-11-26 17:42:43] VERSION="7 (Core)"
[2025-11-26 17:42:43] ID="centos"
[2025-11-26 17:42:43] ID_LIKE="rhel fedora"
[2025-11-26 17:42:43] VERSION_ID="7"
[2025-11-26 17:42:43] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 17:42:43] ANSI_COLOR="0;31"
[2025-11-26 17:42:43] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 17:42:43] HOME_URL="https://www.centos.org/"
[2025-11-26 17:42:43] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 17:42:43] 
[2025-11-26 17:42:43] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 17:42:43] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 17:42:43] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 17:42:43] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 17:42:43] 
[2025-11-26 17:42:43] 2025-11-26 22:41:45,270 | INFO     | ***************************************
[2025-11-26 17:42:43] 2025-11-26 22:41:45,773 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-26 17:42:43] 2025-11-26 22:41:45,796 | INFO     | sufficient remaining disk space (117985771520 B)
[2025-11-26 17:42:43] 2025-11-26 22:41:45,796 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 17:42:43] 2025-11-26 22:41:45,796 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 17:42:43] 2025-11-26 22:41:45,796 | INFO     | update_server=False
[2025-11-26 17:42:43] 2025-11-26 22:41:45,796 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 17:42:43] 2025-11-26 22:41:45,797 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 17:42:43] 2025-11-26 22:41:45,797 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 17:42:43] 2025-11-26 22:41:45,954 | INFO     | all payload control threads have been joined
[2025-11-26 17:42:43] 2025-11-26 22:41:45,966 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-26 17:42:43] 2025-11-26 22:41:45,966 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-26 17:42:43] 2025-11-26 22:41:45,966 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 17:42:43] 2025-11-26 22:41:45,967 | INFO     | will abort loop
[2025-11-26 17:42:43] 2025-11-26 22:41:46,253 | INFO     | all data control threads have been joined
[2025-11-26 17:42:43] 2025-11-26 22:41:46,801 | INFO     | [job] retrieve thread has finished
[2025-11-26 17:42:43] 2025-11-26 22:41:46,810 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 17:42:43] 2025-11-26 22:41:46,960 | INFO     | [payload] control thread has finished
[2025-11-26 17:42:43] 2025-11-26 22:41:46,972 | INFO     | [job] job monitor thread has finished
[2025-11-26 17:42:43] 2025-11-26 22:41:47,245 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 17:42:43] 2025-11-26 22:41:47,260 | INFO     | [data] control thread has finished
[2025-11-26 17:42:43] 2025-11-26 22:41:47,305 | INFO     | all job control threads have been joined
[2025-11-26 17:42:43] 2025-11-26 22:41:47,510 | INFO     | [job] validate thread has finished
[2025-11-26 17:42:43] 2025-11-26 22:41:47,559 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 17:42:43] 2025-11-26 22:41:47,771 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 17:42:43] 2025-11-26 22:41:47,804 | INFO     | [data] copytool_out thread has finished
[2025-11-26 17:42:43] 2025-11-26 22:41:47,859 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 17:42:43] 2025-11-26 22:41:47,898 | INFO     | [payload] failed_post thread has finished
[2025-11-26 17:42:43] 2025-11-26 22:41:48,106 | INFO     | [payload] validate_post thread has finished
[2025-11-26 17:42:43] 2025-11-26 22:41:48,277 | INFO     | [data] copytool_in thread has finished
[2025-11-26 17:42:43] 2025-11-26 22:41:48,312 | INFO     | [job] control thread has finished
[2025-11-26 17:42:43] 2025-11-26 22:41:48,780 | INFO     | [job] queue monitor thread has finished
[2025-11-26 17:42:43] 2025-11-26 22:41:49,806 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 17:42:43] 2025-11-26 22:42:16,098 | INFO     | PID=3663558 has CPU usage=7.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 17:42:43] 2025-11-26 22:42:16,099 | INFO     | .. there are 78 such processes running
[2025-11-26 17:42:43] 2025-11-26 22:42:16,099 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 17:42:43] 2025-11-26 22:42:16,099 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 17:42:43] 2025-11-26 22:42:16,099 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 17:42:43] 2025-11-26 22:42:37,138 | INFO     | [monitor] cgroup control has ended
[2025-11-26 17:42:43] 2025-11-26 22:42:37,584 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140304217261888)>', '<ExcThread(monitor, started 140303730194176)>']
[2025-11-26 17:42:43] 2025-11-26 22:42:38,222 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 17:42:43] 2025-11-26 22:42:38,223 | INFO     | [monitor] control thread has ended
[2025-11-26 17:42:43] 2025-11-26 22:42:42,613 | INFO     | all workflow threads have been joined
[2025-11-26 17:42:43] 2025-11-26 22:42:42,613 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 17:42:43] 2025-11-26 22:42:42,614 | INFO     | traces error code: 0
[2025-11-26 17:42:43] 2025-11-26 22:42:42,614 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 17:42:43] 2025-11-26 22:42:42,774 [wrapper] ==== pilot stdout END ====
[2025-11-26 17:42:43] 2025-11-26 22:42:42,778 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 17:42:43] 2025-11-26 22:42:42,780 [wrapper] pilotpid: 3663558
[2025-11-26 17:42:43] 2025-11-26 22:42:42,784 [wrapper] Pilot exit status: 0
[2025-11-26 17:42:43] 2025-11-26 22:42:42,797 [wrapper] pandaids: 6897139608
[2025-11-26 17:42:43] 2025-11-26 22:42:43,007 [wrapper] cleanup supervisor_pilot  665615 3663559
[2025-11-26 17:42:43] 2025-11-26 22:42:43,014 [wrapper] Test setup, not cleaning
[2025-11-26 17:42:43] 2025-11-26 22:42:43,020 [wrapper] apfmon messages muted
[2025-11-26 17:42:43] 2025-11-26 22:42:43,023 [wrapper] ==== wrapper stdout END ====
[2025-11-26 17:42:43] 2025-11-26 22:42:43,027 [wrapper] ==== wrapper stderr END ====
[2025-11-26 17:42:43]  *** Error codes and diagnostics ***
[2025-11-26 17:42:43]     "exeErrorCode": 0,
[2025-11-26 17:42:43]     "exeErrorDiag": "",
[2025-11-26 17:42:43]     "pilotErrorCode": 0,
[2025-11-26 17:42:43]     "pilotErrorDiag": "",
[2025-11-26 17:42:43]  *** Listing of results directory ***
[2025-11-26 17:42:43] total 1306532
[2025-11-26 17:42:43] -rwx------. 1 boincer umatlas     36292 Nov 25 11:48 runpilot2-wrapper.sh
[2025-11-26 17:42:43] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 11:48 queuedata.json
[2025-11-26 17:42:43] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 11:48 pilot3.tar.gz
[2025-11-26 17:42:43] -rw-r--r--. 1 boincer umatlas       100 Nov 26 11:18 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 17:42:43] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 11:18 run_atlas
[2025-11-26 17:42:43] -rw-r--r--. 1 boincer umatlas       105 Nov 26 11:18 job.xml
[2025-11-26 17:42:43] -rw-r--r--. 2 boincer umatlas 408853195 Nov 26 11:18 EVNT.47483658._002190.pool.root.1
[2025-11-26 17:42:43] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 11:18 start_atlas.sh
[2025-11-26 17:42:43] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 11:18 shared
[2025-11-26 17:42:43] -rw-r--r--. 2 boincer umatlas    590096 Nov 26 11:18 input.tar.gz
[2025-11-26 17:42:43] -rw-r--r--. 1 boincer umatlas         0 Nov 26 11:18 boinc_lockfile
[2025-11-26 17:42:43] -rw-r--r--. 1 boincer umatlas      2783 Nov 26 11:18 pandaJob.out
[2025-11-26 17:42:43] -rw-------. 1 boincer umatlas        57 Nov 26 11:18 setup.sh.local
[2025-11-26 17:42:43] -rw-------. 1 boincer umatlas    991855 Nov 26 11:18 agis_schedconf.cvmfs.json
[2025-11-26 17:42:43] drwx------. 5 boincer umatlas      4096 Nov 26 11:18 pilot3
[2025-11-26 17:42:43] -rw-r--r--. 1 boincer umatlas       533 Nov 26 17:33 boinc_task_state.xml
[2025-11-26 17:42:43] -rw-r--r--. 1 boincer umatlas      6945 Nov 26 17:38 init_data.xml
[2025-11-26 17:42:43] -rw-------. 1 boincer umatlas 915071807 Nov 26 17:40 HITS.47556161._001731.pool.root.1
[2025-11-26 17:42:43] -rw-------. 1 boincer umatlas      1078 Nov 26 17:41 memory_monitor_summary.json
[2025-11-26 17:42:43] -rw-------. 1 boincer umatlas   1516240 Nov 26 17:41 agis_ddmendpoints.agis.ALL.json
[2025-11-26 17:42:43] -rw-------. 1 boincer umatlas   2000941 Nov 26 17:41 log.47556161._001731.job.log.tgz.1
[2025-11-26 17:42:43] -rw-------. 1 boincer umatlas      8640 Nov 26 17:41 heartbeat.json
[2025-11-26 17:42:43] -rw-------. 1 boincer umatlas        95 Nov 26 17:42 pilot_heartbeat.json
[2025-11-26 17:42:43] -rw-r--r--. 1 boincer umatlas        29 Nov 26 17:42 wrapper_checkpoint.txt
[2025-11-26 17:42:43] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 17:42 boinc_mmap_file
[2025-11-26 17:42:43] -rw-------. 1 boincer umatlas      5011 Nov 26 17:42 pilotlog.txt
[2025-11-26 17:42:43] -rw-------. 1 boincer umatlas   3021521 Nov 26 17:42 log.47556161._001731.job.log.1
[2025-11-26 17:42:43] -rw-------. 1 boincer umatlas       353 Nov 26 17:42 output.list
[2025-11-26 17:42:43] -rw-r--r--. 1 boincer umatlas       620 Nov 26 17:42 runtime_log
[2025-11-26 17:42:43] -rw-------. 1 boincer umatlas   5038080 Nov 26 17:42 result.tar.gz
[2025-11-26 17:42:43] -rw-r--r--. 1 boincer umatlas      9340 Nov 26 17:42 runtime_log.err
[2025-11-26 17:42:43] -rw-------. 1 boincer umatlas       665 Nov 26 17:42 lySKDmSOBi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmGPMKDmSKMYMm.diag
[2025-11-26 17:42:43] -rw-r--r--. 1 boincer umatlas     21967 Nov 26 17:42 stderr.txt
[2025-11-26 17:42:43] HITS file was successfully produced:
[2025-11-26 17:42:43] -rw-------. 1 boincer umatlas 915071807 Nov 26 17:40 shared/HITS.pool.root.1
[2025-11-26 17:42:43]  *** Contents of shared directory: ***
[2025-11-26 17:42:43] total 1298424
[2025-11-26 17:42:43] -rw-r--r--. 2 boincer umatlas 408853195 Nov 26 11:18 ATLAS.root_0
[2025-11-26 17:42:43] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 11:18 start_atlas.sh
[2025-11-26 17:42:43] -rw-r--r--. 2 boincer umatlas    590096 Nov 26 11:18 input.tar.gz
[2025-11-26 17:42:43] -rw-------. 1 boincer umatlas 915071807 Nov 26 17:40 HITS.pool.root.1
[2025-11-26 17:42:43] -rw-------. 1 boincer umatlas   5038080 Nov 26 17:42 result.tar.gz
17:42:45 (3658822): run_atlas exited; CPU time 178966.187384
17:42:45 (3658822): called boinc_finish(0)

</stderr_txt>
]]>

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