Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
10:04:03 (31882): wrapper (7.7.26015): starting
10:04:03 (31882): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 10:04:03] Arguments: --nthreads 8
[2025-11-26 10:04:03] Threads: 8
[2025-11-26 10:04:03] Checking for CVMFS
[2025-11-26 10:04:04] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 10:04:04] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 10:04:04] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 10:04:04] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 10:04:04] 2.11.2.0 2830 54624 86028 153324 1 81 18609028 20275200 1 130560 0 11569269 99.785 3317795 28238 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-26 10:04:04] CVMFS is ok
[2025-11-26 10:04:04] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 10:04:04] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 10:04:04] Further information can be found at the LHC@home message board.
[2025-11-26 10:04:04] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 10:04:04] Checking for apptainer binary...
[2025-11-26 10:04:04] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 10:04:04] Running /usr/bin/apptainer --version
[2025-11-26 10:04:04] apptainer version 1.3.2-1.el7
[2025-11-26 10:04:04] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 10:04:06] c-204-14.aglt2.org
[2025-11-26 10:04:06] apptainer works
[2025-11-26 10:04:06] Set ATHENA_PROC_NUMBER=8
[2025-11-26 10:04:06] Set ATHENA_CORE_NUMBER=8
[2025-11-26 10:04:06] Starting ATLAS job with PandaID=6897394671
[2025-11-26 10:04:06] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
11:29:44 (21457): wrapper (7.7.26015): starting
11:29:44 (21457): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 11:29:44] Arguments: --nthreads 8
[2025-11-26 11:29:44] Threads: 8
[2025-11-26 11:29:44] This job has been restarted, cleaning up previous attempt
[2025-11-26 11:29:44] Checking for CVMFS
[2025-11-26 11:29:44] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 11:29:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 11:29:44] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 11:29:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 11:29:45] 2.11.2.0 2830 54710 87172 153328 0 1 18710302 20275200 1 130560 0 11651184 99.787 3321765 28248 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-26 11:29:45] CVMFS is ok
[2025-11-26 11:29:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 11:29:45] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 11:29:45] Further information can be found at the LHC@home message board.
[2025-11-26 11:29:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 11:29:45] Checking for apptainer binary...
[2025-11-26 11:29:45] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 11:29:45] Running /usr/bin/apptainer --version
[2025-11-26 11:29:45] apptainer version 1.3.2-1.el7
[2025-11-26 11:29:45] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 11:29:46] c-204-14.aglt2.org
[2025-11-26 11:29:46] apptainer works
[2025-11-26 11:29:46] Set ATHENA_PROC_NUMBER=8
[2025-11-26 11:29:46] Set ATHENA_CORE_NUMBER=8
[2025-11-26 11:29:46] Starting ATLAS job with PandaID=6897394671
[2025-11-26 11:29:46] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 23:53:38]  *** The last 200 lines of the pilot log: ***
[2025-11-26 23:53:38] 2025-11-27 04:53:06,629 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 23:53:38] 2025-11-27 04:53:06,641 | INFO     | fitting pss+swap vs Time
[2025-11-26 23:53:38] 2025-11-27 04:53:06,641 | INFO     | sum of square deviations: 121123952322.22107
[2025-11-26 23:53:38] 2025-11-27 04:53:06,654 | INFO     | sum of deviations: 751153228366.1564
[2025-11-26 23:53:38] 2025-11-27 04:53:06,654 | INFO     | mean x: 1764196900.6675787
[2025-11-26 23:53:38] 2025-11-27 04:53:06,654 | INFO     | mean y: 3222243.264021888
[2025-11-26 23:53:38] 2025-11-27 04:53:06,654 | INFO     | intersect: -10937489085.942701
[2025-11-26 23:53:38] 2025-11-27 04:53:06,655 | INFO     | chi2: 7.363803407842508
[2025-11-26 23:53:38] 2025-11-27 04:53:06,656 | INFO     | sum of square deviations: 118655617667.47925
[2025-11-26 23:53:38] 2025-11-27 04:53:06,668 | INFO     | sum of deviations: 1058047008298.1895
[2025-11-26 23:53:38] 2025-11-27 04:53:06,668 | INFO     | mean x: 1764196748.1721764
[2025-11-26 23:53:38] 2025-11-27 04:53:06,668 | INFO     | mean y: 3241205.494490358
[2025-11-26 23:53:38] 2025-11-27 04:53:06,668 | INFO     | intersect: -15728024857.979536
[2025-11-26 23:53:38] 2025-11-27 04:53:06,669 | INFO     | chi2: 3.508897019656288
[2025-11-26 23:53:38] 2025-11-27 04:53:06,669 | INFO     | current chi2=3.508897019656288 (change=52.349393033506495 %)
[2025-11-26 23:53:38] 2025-11-27 04:53:06,670 | INFO     | sum of square deviations: 116221051087.7031
[2025-11-26 23:53:38] 2025-11-27 04:53:06,680 | INFO     | sum of deviations: 1191701636353.5398
[2025-11-26 23:53:38] 2025-11-27 04:53:06,681 | INFO     | mean x: 1764196595.6768377
[2025-11-26 23:53:38] 2025-11-27 04:53:06,681 | INFO     | mean y: 3249569.517337032
[2025-11-26 23:53:38] 2025-11-27 04:53:06,681 | INFO     | intersect: -18086381785.91512
[2025-11-26 23:53:38] 2025-11-27 04:53:06,682 | INFO     | chi2: 2.619184670752688
[2025-11-26 23:53:38] 2025-11-27 04:53:06,682 | INFO     | current chi2=2.619184670752688 (change=25.355897990723914 %)
[2025-11-26 23:53:38] 2025-11-27 04:53:06,683 | INFO     | sum of square deviations: 113819844341.82767
[2025-11-26 23:53:38] 2025-11-27 04:53:06,688 | INFO     | monitor loop #3273: job 0:6897394671 is in state 'finished'
[2025-11-26 23:53:38] 2025-11-27 04:53:06,694 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 23:53:38] 2025-11-27 04:53:06,694 | INFO     | sum of deviations: 1181413711498.2324
[2025-11-26 23:53:38] 2025-11-27 04:53:06,695 | INFO     | mean x: 1764196443.1759777
[2025-11-26 23:53:38] 2025-11-27 04:53:06,695 | INFO     | mean y: 3248914.4902234636
[2025-11-26 23:53:38] 2025-11-27 04:53:06,695 | INFO     | intersect: -18308547941.29385
[2025-11-26 23:53:38] 2025-11-27 04:53:06,696 | INFO     | chi2: 2.610753883625083
[2025-11-26 23:53:38] 2025-11-27 04:53:06,696 | INFO     | current chi2=2.610753883625083 (change=0.32188593732040255 %)
[2025-11-26 23:53:38] 2025-11-27 04:53:06,696 | INFO     | right removable region: 715
[2025-11-26 23:53:38] 2025-11-27 04:53:06,697 | INFO     | sum of square deviations: 118655319987.47928
[2025-11-26 23:53:38] 2025-11-27 04:53:06,708 | INFO     | sum of deviations: 518961281462.9087
[2025-11-26 23:53:38] 2025-11-27 04:53:06,708 | INFO     | mean x: 1764197053.1721764
[2025-11-26 23:53:38] 2025-11-27 04:53:06,709 | INFO     | mean y: 3236563.272727273
[2025-11-26 23:53:38] 2025-11-27 04:53:06,709 | INFO     | intersect: -7712809911.20419
[2025-11-26 23:53:38] 2025-11-27 04:53:06,709 | INFO     | chi2: 4.9450838915140105
[2025-11-26 23:53:38] 2025-11-27 04:53:06,710 | INFO     | current chi2=4.9450838915140105 (change=32.8460631329802 %)
[2025-11-26 23:53:38] 2025-11-27 04:53:06,710 | INFO     | sum of square deviations: 116220588220.7515
[2025-11-26 23:53:38] 2025-11-27 04:53:06,721 | INFO     | sum of deviations: 467714109186.81366
[2025-11-26 23:53:38] 2025-11-27 04:53:06,721 | INFO     | mean x: 1764197205.6726768
[2025-11-26 23:53:38] 2025-11-27 04:53:06,721 | INFO     | mean y: 3239771.889042996
[2025-11-26 23:53:38] 2025-11-27 04:53:06,722 | INFO     | intersect: -7096534348.284709
[2025-11-26 23:53:38] 2025-11-27 04:53:06,722 | INFO     | chi2: 4.88881232705246
[2025-11-26 23:53:38] 2025-11-27 04:53:06,723 | INFO     | current chi2=4.88881232705246 (change=1.1379294203302537 %)
[2025-11-26 23:53:38] 2025-11-27 04:53:06,723 | INFO     | left removable region: 20
[2025-11-26 23:53:38] 2025-11-27 04:53:06,723 | INFO     | sum of square deviations: 104095676529.08786
[2025-11-26 23:53:38] 2025-11-27 04:53:06,733 | INFO     | sum of deviations: 836031737892.7551
[2025-11-26 23:53:38] 2025-11-27 04:53:06,733 | INFO     | mean x: 1764197022.6805756
[2025-11-26 23:53:38] 2025-11-27 04:53:06,734 | INFO     | mean y: 3270991.6115107914
[2025-11-26 23:53:38] 2025-11-27 04:53:06,734 | INFO     | intersect: -14165662359.28248
[2025-11-26 23:53:38] 2025-11-27 04:53:06,734 | INFO     | chi2: 0.07925319551447621
[2025-11-26 23:53:38] 2025-11-27 04:53:06,735 | INFO     | current memory leak: 8.03 B/s (using 695 data points, chi2=0.08)
[2025-11-26 23:53:38] 2025-11-27 04:53:06,735 | INFO     | could have reported an average CPU frequency of 2171 MHz (28 samples)
[2025-11-26 23:53:38] 2025-11-27 04:53:06,735 | INFO     | ..............................
[2025-11-26 23:53:38] 2025-11-27 04:53:06,736 | INFO     | . Timing measurements:
[2025-11-26 23:53:38] 2025-11-27 04:53:06,736 | INFO     | . get job = 0 s
[2025-11-26 23:53:38] 2025-11-27 04:53:06,736 | INFO     | . initial setup = 1 s
[2025-11-26 23:53:38] 2025-11-27 04:53:06,736 | INFO     | . payload setup = 9 s
[2025-11-26 23:53:38] 2025-11-27 04:53:06,736 | INFO     | . stage-in = 0 s
[2025-11-26 23:53:38] 2025-11-27 04:53:06,736 | INFO     | . payload execution = 44539 s
[2025-11-26 23:53:38] 2025-11-27 04:53:06,736 | INFO     | . stage-out = 3 s
[2025-11-26 23:53:38] 2025-11-27 04:53:06,736 | INFO     | . log creation = 0 s
[2025-11-26 23:53:38] 2025-11-27 04:53:06,736 | INFO     | ..............................
[2025-11-26 23:53:38] 2025-11-27 04:53:06,828 | INFO     | 
[2025-11-26 23:53:38] 2025-11-27 04:53:06,828 | INFO     | job summary report
[2025-11-26 23:53:38] 2025-11-27 04:53:06,828 | INFO     | --------------------------------------------------
[2025-11-26 23:53:38] 2025-11-27 04:53:06,829 | INFO     | PanDA job id: 6897394671
[2025-11-26 23:53:38] 2025-11-27 04:53:06,829 | INFO     | task id: 47556173
[2025-11-26 23:53:38] 2025-11-27 04:53:06,829 | INFO     | errors: (none)
[2025-11-26 23:53:38] 2025-11-27 04:53:06,829 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 23:53:38] 2025-11-27 04:53:06,829 | INFO     | pilot state: finished 
[2025-11-26 23:53:38] 2025-11-27 04:53:06,830 | INFO     | transexitcode: 0
[2025-11-26 23:53:38] 2025-11-27 04:53:06,830 | INFO     | exeerrorcode: 0
[2025-11-26 23:53:38] 2025-11-27 04:53:06,830 | INFO     | exeerrordiag: 
[2025-11-26 23:53:38] 2025-11-27 04:53:06,830 | INFO     | exitcode: 0
[2025-11-26 23:53:38] 2025-11-27 04:53:06,830 | INFO     | exitmsg: OK
[2025-11-26 23:53:38] 2025-11-27 04:53:06,830 | INFO     | cpuconsumptiontime: 345729 s
[2025-11-26 23:53:38] 2025-11-27 04:53:06,831 | INFO     | nevents: 1000
[2025-11-26 23:53:38] 2025-11-27 04:53:06,831 | INFO     | neventsw: 0
[2025-11-26 23:53:38] 2025-11-27 04:53:06,831 | INFO     | pid: 1313
[2025-11-26 23:53:38] 2025-11-27 04:53:06,831 | INFO     | pgrp: 1313
[2025-11-26 23:53:38] 2025-11-27 04:53:06,831 | INFO     | corecount: 8
[2025-11-26 23:53:38] 2025-11-27 04:53:06,831 | INFO     | event service: False
[2025-11-26 23:53:38] 2025-11-27 04:53:06,832 | INFO     | sizes: {0: 2284263, 6: 2284525, 11: 2284553, 44551: 2330338, 44552: 2330337, 44556: 2339387, 44559: 2339571, 44566: 2339817}
[2025-11-26 23:53:38] 2025-11-27 04:53:06,832 | INFO     | --------------------------------------------------
[2025-11-26 23:53:38] 2025-11-27 04:53:06,832 | INFO     | 
[2025-11-26 23:53:38] 2025-11-27 04:53:06,832 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-26 23:53:38] 2025-11-27 04:53:06,862 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 23:53:38] 2025-11-27 04:53:06,863 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 23:53:38] 2025-11-27 04:53:06,863 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 23:53:38] 2025-11-27 04:53:06,863 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 23:53:38] 2025-11-27 04:53:06,863 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 23:53:38] 2025-11-27 04:53:06,864 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 23:53:38] 2025-11-27 04:53:06,864 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 23:53:38] 2025-11-27 04:53:06,864 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 23:53:38] 2025-11-27 04:53:06,864 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 23:53:38] 2025-11-27 04:53:06,864 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 23:53:38] 2025-11-27 04:53:06,865 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 23:53:38] 2025-11-27 04:53:06,865 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 23:53:38] 2025-11-27 04:53:06,865 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 23:53:38] 2025-11-27 04:53:06,865 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 23:53:38] 2025-11-27 04:53:06,865 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 23:53:38] 2025-11-27 04:53:06,865 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 23:53:38] 2025-11-27 04:53:06,866 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 23:53:38] 2025-11-27 04:53:06,866 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 23:53:38] 2025-11-27 04:53:06,866 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 23:53:38] 2025-11-27 04:53:06,866 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 23:53:38] 2025-11-27 04:53:06,866 | INFO     | job 6897394671 has completed (purged errors)
[2025-11-26 23:53:38] 2025-11-27 04:53:06,867 | INFO     | overall cleanup function is called
[2025-11-26 23:53:38] 2025-11-27 04:53:07,883 | INFO     | --- collectZombieJob: --- 10, [1313]
[2025-11-26 23:53:38] 2025-11-27 04:53:07,883 | INFO     | zombie collector waiting for pid 1313
[2025-11-26 23:53:38] 2025-11-27 04:53:07,883 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 23:53:38] 2025-11-27 04:53:07,883 | INFO     | collected zombie processes
[2025-11-26 23:53:38] 2025-11-27 04:53:07,884 | INFO     | will attempt to kill all subprocesses of pid=1313
[2025-11-26 23:53:38] 2025-11-27 04:53:07,971 | INFO     | process IDs to be killed: [1313] (in reverse order)
[2025-11-26 23:53:38] 2025-11-27 04:53:08,032 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 23:53:38] 2025-11-27 04:53:08,033 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 23:53:38] 2025-11-27 04:53:08,036 | INFO     | did not find any defunct processes belonging to 1313
[2025-11-26 23:53:38] 2025-11-27 04:53:08,039 | INFO     | did not find any defunct processes belonging to 1313
[2025-11-26 23:53:38] 2025-11-27 04:53:08,042 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 23:53:38] 2025-11-27 04:53:08,042 | INFO     | ready for new job
[2025-11-26 23:53:38] 2025-11-27 04:53:08,042 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 23:53:38] 2025-11-27 04:53:08,046 | INFO     | ***************************************
[2025-11-26 23:53:38] 2025-11-27 04:53:08,047 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 23:53:38] 2025-11-27 04:53:08,047 | INFO     | ***************************************
[2025-11-26 23:53:38] 2025-11-27 04:53:08,047 | INFO     | 
[2025-11-26 23:53:38] 2025-11-27 04:53:08,047 | INFO     | architecture information:
[2025-11-26 23:53:38] 2025-11-27 04:53:08,048 | INFO     | executing command: cat /etc/os-release
[2025-11-26 23:53:38] 2025-11-27 04:53:08,067 | INFO     | cat /etc/os-release:
[2025-11-26 23:53:38] NAME="CentOS Linux"
[2025-11-26 23:53:38] VERSION="7 (Core)"
[2025-11-26 23:53:38] ID="centos"
[2025-11-26 23:53:38] ID_LIKE="rhel fedora"
[2025-11-26 23:53:38] VERSION_ID="7"
[2025-11-26 23:53:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 23:53:38] ANSI_COLOR="0;31"
[2025-11-26 23:53:38] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 23:53:38] HOME_URL="https://www.centos.org/"
[2025-11-26 23:53:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 23:53:38] 
[2025-11-26 23:53:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 23:53:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 23:53:38] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 23:53:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 23:53:38] 
[2025-11-26 23:53:38] 2025-11-27 04:53:08,067 | INFO     | ***************************************
[2025-11-26 23:53:38] 2025-11-27 04:53:08,570 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-26 23:53:38] 2025-11-27 04:53:08,592 | INFO     | sufficient remaining disk space (17473470464 B)
[2025-11-26 23:53:38] 2025-11-27 04:53:08,593 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 23:53:38] 2025-11-27 04:53:08,593 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 23:53:38] 2025-11-27 04:53:08,593 | INFO     | update_server=False
[2025-11-26 23:53:38] 2025-11-27 04:53:08,593 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 23:53:38] 2025-11-27 04:53:08,594 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 23:53:38] 2025-11-27 04:53:08,594 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 23:53:38] 2025-11-27 04:53:08,594 | INFO     | aborting loop
[2025-11-26 23:53:38] 2025-11-27 04:53:09,064 | INFO     | all payload control threads have been joined
[2025-11-26 23:53:38] 2025-11-27 04:53:09,154 | INFO     | all data control threads have been joined
[2025-11-26 23:53:38] 2025-11-27 04:53:09,470 | INFO     | all job control threads have been joined
[2025-11-26 23:53:38] 2025-11-27 04:53:09,527 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 23:53:38] 2025-11-27 04:53:09,599 | INFO     | [job] retrieve thread has finished
[2025-11-26 23:53:38] 2025-11-27 04:53:09,600 | INFO     | [job] queue monitor thread has finished
[2025-11-26 23:53:38] 2025-11-27 04:53:09,601 | INFO     | [job] job monitor thread has finished
[2025-11-26 23:53:38] 2025-11-27 04:53:09,675 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 23:53:38] 2025-11-27 04:53:09,897 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 23:53:38] 2025-11-27 04:53:09,968 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 23:53:38] 2025-11-27 04:53:10,070 | INFO     | [payload] control thread has finished
[2025-11-26 23:53:38] 2025-11-27 04:53:10,159 | INFO     | [data] control thread has finished
[2025-11-26 23:53:38] 2025-11-27 04:53:10,167 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 23:53:38] 2025-11-27 04:53:10,229 | INFO     | [data] copytool_in thread has finished
[2025-11-26 23:53:38] 2025-11-27 04:53:10,316 | INFO     | [payload] failed_post thread has finished
[2025-11-26 23:53:38] 2025-11-27 04:53:10,475 | INFO     | [job] control thread has finished
[2025-11-26 23:53:38] 2025-11-27 04:53:10,534 | INFO     | [job] validate thread has finished
[2025-11-26 23:53:38] 2025-11-27 04:53:10,909 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 23:53:38] 2025-11-27 04:53:11,113 | INFO     | [payload] validate_post thread has finished
[2025-11-26 23:53:38] 2025-11-27 04:53:11,533 | INFO     | [data] copytool_out thread has finished
[2025-11-26 23:53:38] 2025-11-27 04:53:13,974 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 23:53:38] 2025-11-27 04:53:16,835 | INFO     | [monitor] cgroup control has ended
[2025-11-26 23:53:38] 2025-11-27 04:53:17,195 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139867360896832)>', '<ExcThread(monitor, started 139866910205696)>']
[2025-11-26 23:53:38] 2025-11-27 04:53:22,196 | INFO     | all workflow threads have been joined
[2025-11-26 23:53:38] 2025-11-27 04:53:22,197 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 23:53:38] 2025-11-27 04:53:22,197 | INFO     | traces error code: 0
[2025-11-26 23:53:38] 2025-11-27 04:53:22,197 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 23:53:38] 2025-11-27 04:53:38,344 | INFO     | PID=25237 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-26 23:53:38] 2025-11-27 04:53:38,346 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 23:53:38] 2025-11-27 04:53:38,346 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 23:53:38] 2025-11-27 04:53:38,346 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 23:53:38] 2025-11-27 04:53:38,346 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 23:53:38] 2025-11-27 04:53:38,346 | INFO     | [monitor] control thread has ended
[2025-11-26 23:53:38] 2025-11-27 04:53:38,464 [wrapper] ==== pilot stdout END ====
[2025-11-26 23:53:38] 2025-11-27 04:53:38,469 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 23:53:38] 2025-11-27 04:53:38,473 [wrapper] pilotpid: 25237
[2025-11-26 23:53:38] 2025-11-27 04:53:38,479 [wrapper] Pilot exit status: 0
[2025-11-26 23:53:38] 2025-11-27 04:53:38,498 [wrapper] pandaids: 6897394671 6897394671
[2025-11-26 23:53:38] 2025-11-27 04:53:38,543 [wrapper] cleanup supervisor_pilot  5373 25238
[2025-11-26 23:53:38] 2025-11-27 04:53:38,549 [wrapper] Test setup, not cleaning
[2025-11-26 23:53:38] 2025-11-27 04:53:38,553 [wrapper] apfmon messages muted
[2025-11-26 23:53:38] 2025-11-27 04:53:38,559 [wrapper] ==== wrapper stdout END ====
[2025-11-26 23:53:38] 2025-11-27 04:53:38,563 [wrapper] ==== wrapper stderr END ====
[2025-11-26 23:53:38]  *** Error codes and diagnostics ***
[2025-11-26 23:53:38]     "exeErrorCode": 0,
[2025-11-26 23:53:38]     "exeErrorDiag": "",
[2025-11-26 23:53:38]     "pilotErrorCode": 0,
[2025-11-26 23:53:38]     "pilotErrorDiag": "",
[2025-11-26 23:53:38]  *** Listing of results directory ***
[2025-11-26 23:53:38] total 1714360
[2025-11-26 23:53:38] drwx------ 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-26 23:53:38] -rw-r--r-- 1 boincer umatlas    576529 Nov 25 11:48 pilot3.tar.gz
[2025-11-26 23:53:38] -rw-r--r-- 1 boincer umatlas      5112 Nov 25 11:55 queuedata.json
[2025-11-26 23:53:38] -rwx------ 1 boincer umatlas     36292 Nov 25 11:56 runpilot2-wrapper.sh
[2025-11-26 23:53:38] -rw-r--r-- 1 boincer umatlas       100 Nov 26 10:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 23:53:38] -rwxr-xr-x 1 boincer umatlas      7986 Nov 26 10:03 run_atlas
[2025-11-26 23:53:38] -rw-r--r-- 1 boincer umatlas       105 Nov 26 10:03 job.xml
[2025-11-26 23:53:38] -rw-r--r-- 3 boincer umatlas 407436601 Nov 26 10:04 EVNT.47483658._003099.pool.root.1
[2025-11-26 23:53:38] -rw-r--r-- 3 boincer umatlas 407436601 Nov 26 10:04 ATLAS.root_0
[2025-11-26 23:53:38] drwxrwx--x 2 boincer umatlas      4096 Nov 26 10:04 shared
[2025-11-26 23:53:38] -rw-r--r-- 2 boincer umatlas    590108 Nov 26 10:04 input.tar.gz
[2025-11-26 23:53:38] -rw-r--r-- 2 boincer umatlas     15847 Nov 26 10:04 start_atlas.sh
[2025-11-26 23:53:38] -rw-r--r-- 1 boincer umatlas         0 Nov 26 10:04 boinc_lockfile
[2025-11-26 23:53:38] -rw-r--r-- 1 boincer umatlas      2785 Nov 26 11:29 pandaJob.out
[2025-11-26 23:53:38] -rw------- 1 boincer umatlas        57 Nov 26 11:29 setup.sh.local
[2025-11-26 23:53:38] -rw------- 1 boincer umatlas    991545 Nov 26 11:30 agis_schedconf.cvmfs.json
[2025-11-26 23:53:38] -rw-r--r-- 1 boincer umatlas       533 Nov 26 23:42 boinc_task_state.xml
[2025-11-26 23:53:38] -rw-r--r-- 1 boincer umatlas      5913 Nov 26 23:45 init_data.xml
[2025-11-26 23:53:38] -rw------- 1 boincer umatlas 920500793 Nov 26 23:52 HITS.47556173._000810.pool.root.1
[2025-11-26 23:53:38] -rw------- 1 boincer umatlas      1061 Nov 26 23:52 memory_monitor_summary.json
[2025-11-26 23:53:38] -rw------- 1 boincer umatlas   1516240 Nov 26 23:52 agis_ddmendpoints.agis.ALL.json
[2025-11-26 23:53:38] -rw------- 1 boincer umatlas   1980126 Nov 26 23:52 log.47556173._000810.job.log.tgz.1
[2025-11-26 23:53:38] -rw------- 1 boincer umatlas      8658 Nov 26 23:53 heartbeat.json
[2025-11-26 23:53:38] -rw-r--r-- 1 boincer umatlas        29 Nov 26 23:53 wrapper_checkpoint.txt
[2025-11-26 23:53:38] -rw-r--r-- 1 boincer umatlas      8192 Nov 26 23:53 boinc_mmap_file
[2025-11-26 23:53:38] -rw------- 1 boincer umatlas        96 Nov 26 23:53 pilot_heartbeat.json
[2025-11-26 23:53:38] -rw------- 1 boincer umatlas       745 Nov 26 23:53 pilotlog.txt
[2025-11-26 23:53:38] -rw------- 1 boincer umatlas   6127012 Nov 26 23:53 log.47556173._000810.job.log.1
[2025-11-26 23:53:38] -rw------- 1 boincer umatlas       353 Nov 26 23:53 output.list
[2025-11-26 23:53:38] -rw-r--r-- 1 boincer umatlas       620 Nov 26 23:53 runtime_log
[2025-11-26 23:53:38] -rw------- 1 boincer umatlas   8130560 Nov 26 23:53 result.tar.gz
[2025-11-26 23:53:38] -rw------- 1 boincer umatlas       793 Nov 26 23:53 tkMMDm1VBi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmEWJKDmZoFxxm.diag
[2025-11-26 23:53:38] -rw-r--r-- 1 boincer umatlas      9428 Nov 26 23:53 runtime_log.err
[2025-11-26 23:53:38] -rw-r--r-- 1 boincer umatlas     23292 Nov 26 23:53 stderr.txt
[2025-11-26 23:53:38] HITS file was successfully produced:
[2025-11-26 23:53:38] -rw------- 1 boincer umatlas 920500793 Nov 26 23:52 shared/HITS.pool.root.1
[2025-11-26 23:53:38]  *** Contents of shared directory: ***
[2025-11-26 23:53:38] total 1305356
[2025-11-26 23:53:38] -rw-r--r-- 3 boincer umatlas 407436601 Nov 26 10:04 ATLAS.root_0
[2025-11-26 23:53:38] -rw-r--r-- 2 boincer umatlas    590108 Nov 26 10:04 input.tar.gz
[2025-11-26 23:53:38] -rw-r--r-- 2 boincer umatlas     15847 Nov 26 10:04 start_atlas.sh
[2025-11-26 23:53:38] -rw------- 1 boincer umatlas 920500793 Nov 26 23:52 HITS.pool.root.1
[2025-11-26 23:53:38] -rw------- 1 boincer umatlas   8130560 Nov 26 23:53 result.tar.gz
23:53:40 (21457): run_atlas exited; CPU time 343511.224528
23:53:40 (21457): called boinc_finish(0)

</stderr_txt>
]]>

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