Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
16:00:49 (4166248): wrapper (7.7.26015): starting
16:00:49 (4166248): wrapper: running run_atlas (--nthreads 3)
[2025-11-26 16:00:49] Arguments: --nthreads 3
[2025-11-26 16:00:49] Threads: 3
[2025-11-26 16:00:49] Checking for CVMFS
[2025-11-26 16:00:50] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 16:00:50] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 16:00:50] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 16:00:50] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 16:00:50] 2.9.2.0 2184780 930 73424 153324 1 88 35679782 36864001 0 130560 0 5896622 99.999 30404 25273 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-26 16:00:50] CVMFS is ok
[2025-11-26 16:00:50] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 16:00:50] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 16:00:50] Further information can be found at the LHC@home message board.
[2025-11-26 16:00:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 16:00:50] Checking for apptainer binary...
[2025-11-26 16:00:50] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 16:00:50] Running /usr/bin/apptainer --version
[2025-11-26 16:00:50] apptainer version 1.4.1-1.1
[2025-11-26 16:00:50] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 16:00:50] thA335
[2025-11-26 16:00:50] apptainer works
[2025-11-26 16:00:50] Set ATHENA_PROC_NUMBER=3
[2025-11-26 16:00:50] Set ATHENA_CORE_NUMBER=3
[2025-11-26 16:00:50] Starting ATLAS job with PandaID=6897998856
[2025-11-26 16:00:50] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 16:05:08]  *** The last 200 lines of the pilot log: ***
[2025-11-26 16:05:08] 2025-11-26 15:04:13,100 | INFO     | 
[2025-11-26 16:05:08] 2025-11-26 15:04:13,101 | INFO     | architecture information:
[2025-11-26 16:05:08] 2025-11-26 15:04:13,101 | INFO     | executing command: cat /etc/os-release
[2025-11-26 16:05:08] 2025-11-26 15:04:13,111 | INFO     | cat /etc/os-release:
[2025-11-26 16:05:08] NAME="CentOS Linux"
[2025-11-26 16:05:08] VERSION="7 (Core)"
[2025-11-26 16:05:08] ID="centos"
[2025-11-26 16:05:08] ID_LIKE="rhel fedora"
[2025-11-26 16:05:08] VERSION_ID="7"
[2025-11-26 16:05:08] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 16:05:08] ANSI_COLOR="0;31"
[2025-11-26 16:05:08] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 16:05:08] HOME_URL="https://www.centos.org/"
[2025-11-26 16:05:08] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 16:05:08] 
[2025-11-26 16:05:08] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 16:05:08] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 16:05:08] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 16:05:08] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 16:05:08] 
[2025-11-26 16:05:08] 2025-11-26 15:04:13,112 | INFO     | ***************************************
[2025-11-26 16:05:08] 2025-11-26 15:04:13,615 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-26 16:05:08] 2025-11-26 15:04:13,651 | INFO     | sufficient remaining disk space (826335559680 B)
[2025-11-26 16:05:08] 2025-11-26 15:04:13,652 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 16:05:08] 2025-11-26 15:04:13,653 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 16:05:08] 2025-11-26 15:04:13,653 | INFO     | update_server=False
[2025-11-26 16:05:08] 2025-11-26 15:04:13,653 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 16:05:08] 2025-11-26 15:04:13,654 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 16:05:08] 2025-11-26 15:04:13,856 | INFO     | all data control threads have been joined
[2025-11-26 16:05:08] 2025-11-26 15:04:14,002 | INFO     | all job control threads have been joined
[2025-11-26 16:05:08] 2025-11-26 15:04:14,005 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 16:05:08] 2025-11-26 15:04:14,006 | INFO     | aborting loop
[2025-11-26 16:05:08] 2025-11-26 15:04:14,058 | INFO     | all payload control threads have been joined
[2025-11-26 16:05:08] 2025-11-26 15:04:14,659 | INFO     | [job] retrieve thread has finished
[2025-11-26 16:05:08] 2025-11-26 15:04:14,660 | INFO     | [job] queue monitor thread has finished
[2025-11-26 16:05:08] 2025-11-26 15:04:14,766 | INFO     | [data] copytool_in thread has finished
[2025-11-26 16:05:08] 2025-11-26 15:04:14,796 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 16:05:08] 2025-11-26 15:04:14,848 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 16:05:08] 2025-11-26 15:04:14,862 | INFO     | [data] control thread has finished
[2025-11-26 16:05:08] 2025-11-26 15:04:14,915 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 16:05:08] 2025-11-26 15:04:15,008 | INFO     | [job] control thread has finished
[2025-11-26 16:05:08] 2025-11-26 15:04:15,012 | INFO     | [job] job monitor thread has finished
[2025-11-26 16:05:08] 2025-11-26 15:04:15,033 | INFO     | [job] validate thread has finished
[2025-11-26 16:05:08] 2025-11-26 15:04:15,064 | INFO     | [payload] control thread has finished
[2025-11-26 16:05:08] 2025-11-26 15:04:15,118 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 16:05:08] 2025-11-26 15:04:15,187 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 16:05:08] 2025-11-26 15:04:15,365 | INFO     | [payload] failed_post thread has finished
[2025-11-26 16:05:08] 2025-11-26 15:04:15,726 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 16:05:08] 2025-11-26 15:04:15,970 | INFO     | [payload] validate_post thread has finished
[2025-11-26 16:05:08] 2025-11-26 15:04:16,921 | INFO     | [data] copytool_out thread has finished
[2025-11-26 16:05:08] 2025-11-26 15:04:19,733 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 16:05:08] 2025-11-26 15:04:43,673 | INFO     | PID=4169974 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 16:05:08] 2025-11-26 15:04:43,673 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 16:05:08] 2025-11-26 15:04:43,673 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 16:05:08] 2025-11-26 15:04:43,673 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 16:05:08] 2025-11-26 15:05:02,771 | INFO     | [monitor] cgroup control has ended
[2025-11-26 16:05:08] 2025-11-26 15:05:03,613 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139859256252224)>', '<ExcThread(monitor, started 139858471274240)>']
[2025-11-26 16:05:08] 2025-11-26 15:05:03,777 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 16:05:08] 2025-11-26 15:05:03,777 | INFO     | [monitor] control thread has ended
[2025-11-26 16:05:08] 2025-11-26 15:05:08,639 | INFO     | all workflow threads have been joined
[2025-11-26 16:05:08] 2025-11-26 15:05:08,639 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 16:05:08] 2025-11-26 15:05:08,640 | INFO     | traces error code: 0
[2025-11-26 16:05:08] 2025-11-26 15:05:08,640 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 16:05:08] 2025-11-26 15:05:08,689 [wrapper] ==== pilot stdout END ====
[2025-11-26 16:05:08] 2025-11-26 15:05:08,692 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 16:05:08] 2025-11-26 15:05:08,695 [wrapper] pilotpid: 4169974
[2025-11-26 16:05:08] 2025-11-26 15:05:08,698 [wrapper] Pilot exit status: 0
[2025-11-26 16:05:08] 2025-11-26 15:05:08,705 [wrapper] pandaids: 6897998856
[2025-11-26 16:05:08] 2025-11-26 15:05:08,724 [wrapper] cleanup supervisor_pilot 4169980 4169975
[2025-11-26 16:05:08] 2025-11-26 15:05:08,728 [wrapper] Test setup, not cleaning
[2025-11-26 16:05:08] 2025-11-26 15:05:08,731 [wrapper] apfmon messages muted
[2025-11-26 16:05:08] 2025-11-26 15:05:08,734 [wrapper] ==== wrapper stdout END ====
[2025-11-26 16:05:08] 2025-11-26 15:05:08,736 [wrapper] ==== wrapper stderr END ====
[2025-11-26 16:05:08]  *** Error codes and diagnostics ***
[2025-11-26 16:05:08]     "exeErrorCode": 65,
[2025-11-26 16:05:08]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-26 16:05:08]     "pilotErrorCode": 1305,
[2025-11-26 16:05:08]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-26 16:05:08]  *** Listing of results directory ***
[2025-11-26 16:05:08] total 405976
[2025-11-26 16:05:08] -rw-r--r-- 1 boinc boinc    576529 Nov 26 02:44 pilot3.tar.gz
[2025-11-26 16:05:08] -rw-r--r-- 1 boinc boinc      5112 Nov 26 03:26 queuedata.json
[2025-11-26 16:05:08] -rwx------ 1 boinc boinc     36292 Nov 26 03:29 runpilot2-wrapper.sh
[2025-11-26 16:05:08] -rw-r--r-- 1 boinc boinc       100 Nov 26 16:00 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 16:05:08] -rwxr-xr-x 1 boinc boinc      7986 Nov 26 16:00 run_atlas
[2025-11-26 16:05:08] -rw-r--r-- 1 boinc boinc       105 Nov 26 16:00 job.xml
[2025-11-26 16:05:08] -rw-r--r-- 2 boinc boinc 411531782 Nov 26 16:00 EVNT.47483658._002381.pool.root.1
[2025-11-26 16:05:08] -rw-r--r-- 2 boinc boinc    590109 Nov 26 16:00 input.tar.gz
[2025-11-26 16:05:08] -rw-r--r-- 2 boinc boinc     15847 Nov 26 16:00 start_atlas.sh
[2025-11-26 16:05:08] drwxrwx--x 2 boinc boinc      4096 Nov 26 16:00 shared
[2025-11-26 16:05:08] -rw-r--r-- 1 boinc boinc         0 Nov 26 16:00 boinc_setup_complete
[2025-11-26 16:05:08] -rw-r--r-- 1 boinc boinc      6196 Nov 26 16:00 init_data.xml
[2025-11-26 16:05:08] -rw-r--r-- 1 boinc boinc         0 Nov 26 16:00 boinc_lockfile
[2025-11-26 16:05:08] -rw-r--r-- 1 boinc boinc      2784 Nov 26 16:00 pandaJob.out
[2025-11-26 16:05:08] -rw------- 1 boinc boinc    992360 Nov 26 16:01 agis_schedconf.cvmfs.json
[2025-11-26 16:05:08] -rw------- 1 boinc boinc   1516240 Nov 26 16:01 agis_ddmendpoints.agis.ALL.json
[2025-11-26 16:05:08] drwx------ 5 boinc boinc      4096 Nov 26 16:01 pilot3
[2025-11-26 16:05:08] -rw-r--r-- 1 boinc boinc       522 Nov 26 16:01 boinc_task_state.xml
[2025-11-26 16:05:08] -rw------- 1 boinc boinc       985 Nov 26 16:02 memory_monitor_summary.json
[2025-11-26 16:05:08] -rw------- 1 boinc boinc     55776 Nov 26 16:02 log.47556161._003640.job.log.tgz.1
[2025-11-26 16:05:08] -rw------- 1 boinc boinc        95 Nov 26 16:04 pilot_heartbeat.json
[2025-11-26 16:05:08] -rw------- 1 boinc boinc      8386 Nov 26 16:04 heartbeat.json
[2025-11-26 16:05:08] -rw-r--r-- 1 boinc boinc        22 Nov 26 16:05 wrapper_checkpoint.txt
[2025-11-26 16:05:08] -rw-r--r-- 1 boinc boinc      8192 Nov 26 16:05 boinc_mmap_file
[2025-11-26 16:05:08] -rw------- 1 boinc boinc      4752 Nov 26 16:05 pilotlog.txt
[2025-11-26 16:05:08] -rw------- 1 boinc boinc     91602 Nov 26 16:05 log.47556161._003640.job.log.1
[2025-11-26 16:05:08] -rw------- 1 boinc boinc       186 Nov 26 16:05 output.list
[2025-11-26 16:05:08] -rw-r--r-- 1 boinc boinc       620 Nov 26 16:05 runtime_log
[2025-11-26 16:05:08] -rw------- 1 boinc boinc    163840 Nov 26 16:05 result.tar.gz
[2025-11-26 16:05:08] -rw------- 1 boinc boinc       649 Nov 26 16:05 HwiMDm4SKi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm2jMKDmb7l2Xn.diag
[2025-11-26 16:05:08] -rw-r--r-- 1 boinc boinc      8744 Nov 26 16:05 runtime_log.err
[2025-11-26 16:05:08] -rw-r--r-- 1 boinc boinc      9405 Nov 26 16:05 stderr.txt
[2025-11-26 16:05:08] No HITS result produced
[2025-11-26 16:05:08]  *** Contents of shared directory: ***
[2025-11-26 16:05:08] total 402648
[2025-11-26 16:05:08] -rw-r--r-- 2 boinc boinc 411531782 Nov 26 16:00 ATLAS.root_0
[2025-11-26 16:05:08] -rw-r--r-- 2 boinc boinc    590109 Nov 26 16:00 input.tar.gz
[2025-11-26 16:05:08] -rw-r--r-- 2 boinc boinc     15847 Nov 26 16:00 start_atlas.sh
[2025-11-26 16:05:08] -rw------- 1 boinc boinc    163840 Nov 26 16:05 result.tar.gz
16:05:10 (4166248): run_atlas exited; CPU time 30.828098
16:05:10 (4166248): called boinc_finish(0)

</stderr_txt>
]]>

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