Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
15:56:25 (4145396): wrapper (7.7.26015): starting
15:56:25 (4145396): wrapper: running run_atlas (--nthreads 3)
[2025-11-26 15:56:25] Arguments: --nthreads 3
[2025-11-26 15:56:25] Threads: 3
[2025-11-26 15:56:25] Checking for CVMFS
[2025-11-26 15:56:25] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 15:56:25] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 15:56:25] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 15:56:26] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 15:56:26] 2.9.2.0 2184780 926 73872 153324 2 88 35677568 36864001 0 130560 0 5833995 99.999 30403 25335 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-26 15:56:26] CVMFS is ok
[2025-11-26 15:56:26] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 15:56:26] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 15:56:26] Further information can be found at the LHC@home message board.
[2025-11-26 15:56:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 15:56:26] Checking for apptainer binary...
[2025-11-26 15:56:26] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 15:56:26] Running /usr/bin/apptainer --version
[2025-11-26 15:56:26] apptainer version 1.4.1-1.1
[2025-11-26 15:56:26] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 15:56:26] thA335
[2025-11-26 15:56:26] apptainer works
[2025-11-26 15:56:26] Set ATHENA_PROC_NUMBER=3
[2025-11-26 15:56:26] Set ATHENA_CORE_NUMBER=3
[2025-11-26 15:56:26] Starting ATLAS job with PandaID=6897998745
[2025-11-26 15:56:26] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 16:00:45]  *** The last 200 lines of the pilot log: ***
[2025-11-26 16:00:45] 2025-11-26 14:59:57,854 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 16:00:45] 2025-11-26 14:59:57,854 | INFO     | update_server=False
[2025-11-26 16:00:45] 2025-11-26 14:59:57,854 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 16:00:45] 2025-11-26 14:59:57,854 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 16:00:45] 2025-11-26 14:59:57,855 | INFO     | aborting loop
[2025-11-26 16:00:45] 2025-11-26 14:59:57,855 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 16:00:45] 2025-11-26 14:59:58,267 | INFO     | all job control threads have been joined
[2025-11-26 16:00:45] 2025-11-26 14:59:58,396 | INFO     | all data control threads have been joined
[2025-11-26 16:00:45] 2025-11-26 14:59:58,781 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 16:00:45] 2025-11-26 14:59:58,833 | INFO     | all payload control threads have been joined
[2025-11-26 16:00:45] 2025-11-26 14:59:58,860 | INFO     | [job] job monitor thread has finished
[2025-11-26 16:00:45] 2025-11-26 14:59:58,861 | INFO     | [job] retrieve thread has finished
[2025-11-26 16:00:45] 2025-11-26 14:59:58,861 | INFO     | [job] queue monitor thread has finished
[2025-11-26 16:00:45] 2025-11-26 14:59:59,077 | INFO     | [payload] failed_post thread has finished
[2025-11-26 16:00:45] 2025-11-26 14:59:59,273 | INFO     | [job] control thread has finished
[2025-11-26 16:00:45] 2025-11-26 14:59:59,350 | INFO     | [data] copytool_in thread has finished
[2025-11-26 16:00:45] 2025-11-26 14:59:59,403 | INFO     | [data] control thread has finished
[2025-11-26 16:00:45] 2025-11-26 14:59:59,711 | INFO     | [payload] validate_post thread has finished
[2025-11-26 16:00:45] 2025-11-26 14:59:59,787 | INFO     | [job] validate thread has finished
[2025-11-26 16:00:45] 2025-11-26 14:59:59,835 | INFO     | [payload] control thread has finished
[2025-11-26 16:00:45] 2025-11-26 14:59:59,868 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 16:00:45] 2025-11-26 14:59:59,916 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 16:00:45] 2025-11-26 15:00:00,139 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 16:00:45] 2025-11-26 15:00:00,210 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 16:00:45] 2025-11-26 15:00:00,761 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 16:00:45] 2025-11-26 15:00:00,787 | INFO     | [data] copytool_out thread has finished
[2025-11-26 16:00:45] 2025-11-26 15:00:04,768 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 16:00:45] 2025-11-26 15:00:27,414 | INFO     | PID=4149137 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 16:00:45] 2025-11-26 15:00:27,414 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 16:00:45] 2025-11-26 15:00:27,414 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 16:00:45] 2025-11-26 15:00:27,414 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 16:00:45] 2025-11-26 15:00:38,515 | INFO     | [monitor] cgroup control has ended
[2025-11-26 16:00:45] 2025-11-26 15:00:40,310 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140077122086720)>', '<ExcThread(monitor, started 140076180821760)>']
[2025-11-26 16:00:45] 2025-11-26 15:00:40,484 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 16:00:45] 2025-11-26 15:00:40,484 | INFO     | [monitor] control thread has ended
[2025-11-26 16:00:45] 2025-11-26 15:00:45,336 | INFO     | all workflow threads have been joined
[2025-11-26 16:00:45] 2025-11-26 15:00:45,337 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 16:00:45] 2025-11-26 15:00:45,337 | INFO     | traces error code: 0
[2025-11-26 16:00:45] 2025-11-26 15:00:45,338 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 16:00:45] 2025-11-26 15:00:45,384 [wrapper] ==== pilot stdout END ====
[2025-11-26 16:00:45] 2025-11-26 15:00:45,387 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 16:00:45] 2025-11-26 15:00:45,390 [wrapper] pilotpid: 4149137
[2025-11-26 16:00:45] 2025-11-26 15:00:45,393 [wrapper] Pilot exit status: 0
[2025-11-26 16:00:45] 2025-11-26 15:00:45,401 [wrapper] pandaids: 6897998745
[2025-11-26 16:00:45] 2025-11-26 15:00:45,419 [wrapper] cleanup supervisor_pilot 4149143 4149138
[2025-11-26 16:00:45] 2025-11-26 15:00:45,422 [wrapper] Test setup, not cleaning
[2025-11-26 16:00:45] 2025-11-26 15:00:45,424 [wrapper] apfmon messages muted
[2025-11-26 16:00:45] 2025-11-26 15:00:45,427 [wrapper] ==== wrapper stdout END ====
[2025-11-26 16:00:45] 2025-11-26 15:00:45,429 [wrapper] ==== wrapper stderr END ====
[2025-11-26 16:00:45]  *** Error codes and diagnostics ***
[2025-11-26 16:00:45]     "exeErrorCode": 65,
[2025-11-26 16:00:45]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-26 16:00:45]     "pilotErrorCode": 1305,
[2025-11-26 16:00:45]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-26 16:00:45]  *** Listing of results directory ***
[2025-11-26 16:00:45] total 405608
[2025-11-26 16:00:45] -rw-r--r-- 1 boinc boinc    576529 Nov 26 02:44 pilot3.tar.gz
[2025-11-26 16:00:45] -rw-r--r-- 1 boinc boinc      5112 Nov 26 03:26 queuedata.json
[2025-11-26 16:00:45] -rwx------ 1 boinc boinc     36292 Nov 26 03:29 runpilot2-wrapper.sh
[2025-11-26 16:00:45] -rw-r--r-- 1 boinc boinc       100 Nov 26 15:56 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 16:00:45] -rwxr-xr-x 1 boinc boinc      7986 Nov 26 15:56 run_atlas
[2025-11-26 16:00:45] -rw-r--r-- 1 boinc boinc       105 Nov 26 15:56 job.xml
[2025-11-26 16:00:45] -rw-r--r-- 2 boinc boinc 411145366 Nov 26 15:56 EVNT.47483658._003150.pool.root.1
[2025-11-26 16:00:45] -rw-r--r-- 2 boinc boinc    590105 Nov 26 15:56 input.tar.gz
[2025-11-26 16:00:45] -rw-r--r-- 2 boinc boinc     15847 Nov 26 15:56 start_atlas.sh
[2025-11-26 16:00:45] drwxrwx--x 2 boinc boinc      4096 Nov 26 15:56 shared
[2025-11-26 16:00:45] -rw-r--r-- 1 boinc boinc         0 Nov 26 15:56 boinc_setup_complete
[2025-11-26 16:00:45] -rw-r--r-- 1 boinc boinc      6196 Nov 26 15:56 init_data.xml
[2025-11-26 16:00:45] -rw-r--r-- 1 boinc boinc         0 Nov 26 15:56 boinc_lockfile
[2025-11-26 16:00:45] -rw-r--r-- 1 boinc boinc      2785 Nov 26 15:56 pandaJob.out
[2025-11-26 16:00:45] -rw------- 1 boinc boinc    992360 Nov 26 15:56 agis_schedconf.cvmfs.json
[2025-11-26 16:00:45] -rw------- 1 boinc boinc   1516240 Nov 26 15:56 agis_ddmendpoints.agis.ALL.json
[2025-11-26 16:00:45] drwx------ 5 boinc boinc      4096 Nov 26 15:56 pilot3
[2025-11-26 16:00:45] -rw-r--r-- 1 boinc boinc       523 Nov 26 15:57 boinc_task_state.xml
[2025-11-26 16:00:45] -rw------- 1 boinc boinc       951 Nov 26 15:57 memory_monitor_summary.json
[2025-11-26 16:00:45] -rw------- 1 boinc boinc     56170 Nov 26 15:57 log.47556173._001069.job.log.tgz.1
[2025-11-26 16:00:45] -rw------- 1 boinc boinc        95 Nov 26 15:59 pilot_heartbeat.json
[2025-11-26 16:00:45] -rw------- 1 boinc boinc      8413 Nov 26 15:59 heartbeat.json
[2025-11-26 16:00:45] -rw-r--r-- 1 boinc boinc        23 Nov 26 16:00 wrapper_checkpoint.txt
[2025-11-26 16:00:45] -rw-r--r-- 1 boinc boinc      8192 Nov 26 16:00 boinc_mmap_file
[2025-11-26 16:00:45] -rw------- 1 boinc boinc      4752 Nov 26 16:00 pilotlog.txt
[2025-11-26 16:00:45] -rw------- 1 boinc boinc     93832 Nov 26 16:00 log.47556173._001069.job.log.1
[2025-11-26 16:00:45] -rw------- 1 boinc boinc       186 Nov 26 16:00 output.list
[2025-11-26 16:00:45] -rw-r--r-- 1 boinc boinc       620 Nov 26 16:00 runtime_log
[2025-11-26 16:00:45] -rw------- 1 boinc boinc    174080 Nov 26 16:00 result.tar.gz
[2025-11-26 16:00:45] -rw-r--r-- 1 boinc boinc      8744 Nov 26 16:00 runtime_log.err
[2025-11-26 16:00:45] -rw------- 1 boinc boinc       649 Nov 26 16:00 RQoMDm4SKi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm6jMKDm6GtEzn.diag
[2025-11-26 16:00:45] -rw-r--r-- 1 boinc boinc      7893 Nov 26 16:00 stderr.txt
[2025-11-26 16:00:45] No HITS result produced
[2025-11-26 16:00:45]  *** Contents of shared directory: ***
[2025-11-26 16:00:45] total 402280
[2025-11-26 16:00:45] -rw-r--r-- 2 boinc boinc 411145366 Nov 26 15:56 ATLAS.root_0
[2025-11-26 16:00:45] -rw-r--r-- 2 boinc boinc    590105 Nov 26 15:56 input.tar.gz
[2025-11-26 16:00:45] -rw-r--r-- 2 boinc boinc     15847 Nov 26 15:56 start_atlas.sh
[2025-11-26 16:00:45] -rw------- 1 boinc boinc    174080 Nov 26 16:00 result.tar.gz
16:00:46 (4145396): run_atlas exited; CPU time 32.048926
16:00:46 (4145396): called boinc_finish(0)

</stderr_txt>
]]>

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