Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
16:23:44 (76386): wrapper (7.7.26015): starting
16:23:44 (76386): wrapper: running run_atlas (--nthreads 3)
[2025-11-26 16:23:44] Arguments: --nthreads 3
[2025-11-26 16:23:44] Threads: 3
[2025-11-26 16:23:44] Checking for CVMFS
[2025-11-26 16:23:44] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 16:23:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 16:23:44] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 16:23:44] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 16:23:44] 2.9.2.0 2184780 953 72532 153326 3 88 35693669 36864000 0 130560 0 6209635 99.999 33060 2653 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2025-11-26 16:23:44] CVMFS is ok
[2025-11-26 16:23:44] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 16:23:44] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 16:23:44] Further information can be found at the LHC@home message board.
[2025-11-26 16:23:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 16:23:44] Checking for apptainer binary...
[2025-11-26 16:23:44] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 16:23:44] Running /usr/bin/apptainer --version
[2025-11-26 16:23:44] apptainer version 1.4.1-1.1
[2025-11-26 16:23:44] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 16:23:44] thA335
[2025-11-26 16:23:44] apptainer works
[2025-11-26 16:23:44] Set ATHENA_PROC_NUMBER=3
[2025-11-26 16:23:44] Set ATHENA_CORE_NUMBER=3
[2025-11-26 16:23:44] Starting ATLAS job with PandaID=6897394564
[2025-11-26 16:23:44] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 16:28:02]  *** The last 200 lines of the pilot log: ***
[2025-11-26 16:28:02] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 16:28:02] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 16:28:02] 
[2025-11-26 16:28:02] 2025-11-26 15:27:10,196 | INFO     | ***************************************
[2025-11-26 16:28:02] 2025-11-26 15:27:10,700 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-26 16:28:02] 2025-11-26 15:27:10,713 | INFO     | sufficient remaining disk space (826328219648 B)
[2025-11-26 16:28:02] 2025-11-26 15:27:10,713 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 16:28:02] 2025-11-26 15:27:10,713 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 16:28:02] 2025-11-26 15:27:10,714 | INFO     | update_server=False
[2025-11-26 16:28:02] 2025-11-26 15:27:10,714 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 16:28:02] 2025-11-26 15:27:10,714 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 16:28:02] 2025-11-26 15:27:10,714 | INFO     | aborting loop
[2025-11-26 16:28:02] 2025-11-26 15:27:10,714 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 16:28:02] 2025-11-26 15:27:10,946 | INFO     | all job control threads have been joined
[2025-11-26 16:28:02] 2025-11-26 15:27:11,487 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 16:28:02] 2025-11-26 15:27:11,719 | INFO     | [job] retrieve thread has finished
[2025-11-26 16:28:02] 2025-11-26 15:27:11,720 | INFO     | [job] job monitor thread has finished
[2025-11-26 16:28:02] 2025-11-26 15:27:11,721 | INFO     | [job] queue monitor thread has finished
[2025-11-26 16:28:02] 2025-11-26 15:27:11,731 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 16:28:02] 2025-11-26 15:27:11,783 | INFO     | [payload] failed_post thread has finished
[2025-11-26 16:28:02] 2025-11-26 15:27:11,795 | INFO     | all data control threads have been joined
[2025-11-26 16:28:02] 2025-11-26 15:27:11,952 | INFO     | [job] control thread has finished
[2025-11-26 16:28:02] 2025-11-26 15:27:12,138 | INFO     | all payload control threads have been joined
[2025-11-26 16:28:02] 2025-11-26 15:27:12,745 | INFO     | [payload] validate_post thread has finished
[2025-11-26 16:28:02] 2025-11-26 15:27:12,801 | INFO     | [data] control thread has finished
[2025-11-26 16:28:02] 2025-11-26 15:27:12,907 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 16:28:02] 2025-11-26 15:27:12,991 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 16:28:02] 2025-11-26 15:27:13,095 | INFO     | [job] validate thread has finished
[2025-11-26 16:28:02] 2025-11-26 15:27:13,133 | INFO     | [data] copytool_in thread has finished
[2025-11-26 16:28:02] 2025-11-26 15:27:13,143 | INFO     | [payload] control thread has finished
[2025-11-26 16:28:02] 2025-11-26 15:27:13,179 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 16:28:02] 2025-11-26 15:27:13,494 | INFO     | [data] copytool_out thread has finished
[2025-11-26 16:28:02] 2025-11-26 15:27:13,814 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 16:28:02] 2025-11-26 15:27:17,821 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 16:28:02] 2025-11-26 15:27:41,248 | INFO     | PID=80113 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-26 16:28:02] 2025-11-26 15:27:41,248 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 16:28:02] 2025-11-26 15:27:41,248 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 16:28:02] 2025-11-26 15:27:41,248 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 16:28:02] 2025-11-26 15:27:56,413 | INFO     | [monitor] cgroup control has ended
[2025-11-26 16:28:02] 2025-11-26 15:27:57,555 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140661674104640)>', '<ExcThread(monitor, started 140660883568384)>']
[2025-11-26 16:28:02] 2025-11-26 15:27:58,335 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 16:28:02] 2025-11-26 15:27:58,335 | INFO     | [monitor] control thread has ended
[2025-11-26 16:28:02] 2025-11-26 15:28:02,581 | INFO     | all workflow threads have been joined
[2025-11-26 16:28:02] 2025-11-26 15:28:02,581 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 16:28:02] 2025-11-26 15:28:02,582 | INFO     | traces error code: 0
[2025-11-26 16:28:02] 2025-11-26 15:28:02,582 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 16:28:02] 2025-11-26 15:28:02,629 [wrapper] ==== pilot stdout END ====
[2025-11-26 16:28:02] 2025-11-26 15:28:02,633 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 16:28:02] 2025-11-26 15:28:02,636 [wrapper] pilotpid: 80113
[2025-11-26 16:28:02] 2025-11-26 15:28:02,639 [wrapper] Pilot exit status: 0
[2025-11-26 16:28:02] 2025-11-26 15:28:02,647 [wrapper] pandaids: 6897394564
[2025-11-26 16:28:02] 2025-11-26 15:28:02,665 [wrapper] cleanup supervisor_pilot   80119 80114
[2025-11-26 16:28:02] 2025-11-26 15:28:02,668 [wrapper] Test setup, not cleaning
[2025-11-26 16:28:02] 2025-11-26 15:28:02,670 [wrapper] apfmon messages muted
[2025-11-26 16:28:02] 2025-11-26 15:28:02,673 [wrapper] ==== wrapper stdout END ====
[2025-11-26 16:28:02] 2025-11-26 15:28:02,676 [wrapper] ==== wrapper stderr END ====
[2025-11-26 16:28:02]  *** Error codes and diagnostics ***
[2025-11-26 16:28:02]     "exeErrorCode": 65,
[2025-11-26 16:28:02]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-26 16:28:02]     "pilotErrorCode": 1305,
[2025-11-26 16:28:02]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-26 16:28:02]  *** Listing of results directory ***
[2025-11-26 16:28:02] total 401988
[2025-11-26 16:28:02] -rw-r--r-- 1 boinc boinc    576529 Nov 25 17:48 pilot3.tar.gz
[2025-11-26 16:28:02] -rw-r--r-- 1 boinc boinc      5112 Nov 25 17:55 queuedata.json
[2025-11-26 16:28:02] -rwx------ 1 boinc boinc     36292 Nov 25 17:56 runpilot2-wrapper.sh
[2025-11-26 16:28:02] -rw-r--r-- 1 boinc boinc       100 Nov 26 16:23 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 16:28:02] -rwxr-xr-x 1 boinc boinc      7986 Nov 26 16:23 run_atlas
[2025-11-26 16:28:02] -rw-r--r-- 1 boinc boinc       105 Nov 26 16:23 job.xml
[2025-11-26 16:28:02] -rw-r--r-- 2 boinc boinc 407436601 Nov 26 16:23 EVNT.47483658._003099.pool.root.1
[2025-11-26 16:28:02] -rw-r--r-- 2 boinc boinc    590106 Nov 26 16:23 input.tar.gz
[2025-11-26 16:28:02] -rw-r--r-- 2 boinc boinc     15847 Nov 26 16:23 start_atlas.sh
[2025-11-26 16:28:02] drwxrwx--x 2 boinc boinc      4096 Nov 26 16:23 shared
[2025-11-26 16:28:02] -rw-r--r-- 1 boinc boinc         0 Nov 26 16:23 boinc_setup_complete
[2025-11-26 16:28:02] -rw-r--r-- 1 boinc boinc      6196 Nov 26 16:23 init_data.xml
[2025-11-26 16:28:02] -rw-r--r-- 1 boinc boinc         0 Nov 26 16:23 boinc_lockfile
[2025-11-26 16:28:02] -rw-r--r-- 1 boinc boinc      2785 Nov 26 16:23 pandaJob.out
[2025-11-26 16:28:02] -rw------- 1 boinc boinc    991855 Nov 26 16:23 agis_schedconf.cvmfs.json
[2025-11-26 16:28:02] -rw------- 1 boinc boinc   1516240 Nov 26 16:23 agis_ddmendpoints.agis.ALL.json
[2025-11-26 16:28:02] drwx------ 5 boinc boinc      4096 Nov 26 16:23 pilot3
[2025-11-26 16:28:02] -rw-r--r-- 1 boinc boinc       522 Nov 26 16:24 boinc_task_state.xml
[2025-11-26 16:28:02] -rw------- 1 boinc boinc       966 Nov 26 16:25 memory_monitor_summary.json
[2025-11-26 16:28:02] -rw------- 1 boinc boinc     56181 Nov 26 16:25 log.47556173._000806.job.log.tgz.1
[2025-11-26 16:28:02] -rw------- 1 boinc boinc        95 Nov 26 16:26 pilot_heartbeat.json
[2025-11-26 16:28:02] -rw------- 1 boinc boinc      8412 Nov 26 16:27 heartbeat.json
[2025-11-26 16:28:02] -rw-r--r-- 1 boinc boinc        22 Nov 26 16:27 wrapper_checkpoint.txt
[2025-11-26 16:28:02] -rw-r--r-- 1 boinc boinc      8192 Nov 26 16:27 boinc_mmap_file
[2025-11-26 16:28:02] -rw------- 1 boinc boinc      4750 Nov 26 16:28 pilotlog.txt
[2025-11-26 16:28:02] -rw------- 1 boinc boinc     93186 Nov 26 16:28 log.47556173._000806.job.log.1
[2025-11-26 16:28:02] -rw------- 1 boinc boinc       186 Nov 26 16:28 output.list
[2025-11-26 16:28:02] -rw-r--r-- 1 boinc boinc       620 Nov 26 16:28 runtime_log
[2025-11-26 16:28:02] -rw------- 1 boinc boinc    174080 Nov 26 16:28 result.tar.gz
[2025-11-26 16:28:02] -rw-r--r-- 1 boinc boinc      8744 Nov 26 16:28 runtime_log.err
[2025-11-26 16:28:02] -rw------- 1 boinc boinc       648 Nov 26 16:28 huHMDm1VBi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmCWJKDm8igZRm.diag
[2025-11-26 16:28:02] -rw-r--r-- 1 boinc boinc      8464 Nov 26 16:28 stderr.txt
[2025-11-26 16:28:02] No HITS result produced
[2025-11-26 16:28:02]  *** Contents of shared directory: ***
[2025-11-26 16:28:02] total 398660
[2025-11-26 16:28:02] -rw-r--r-- 2 boinc boinc 407436601 Nov 26 16:23 ATLAS.root_0
[2025-11-26 16:28:02] -rw-r--r-- 2 boinc boinc    590106 Nov 26 16:23 input.tar.gz
[2025-11-26 16:28:02] -rw-r--r-- 2 boinc boinc     15847 Nov 26 16:23 start_atlas.sh
[2025-11-26 16:28:02] -rw------- 1 boinc boinc    174080 Nov 26 16:28 result.tar.gz
16:28:04 (76386): run_atlas exited; CPU time 31.963310
16:28:04 (76386): called boinc_finish(0)

</stderr_txt>
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