Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
19:29:45 (1362026): wrapper (7.7.26015): starting
19:29:45 (1362026): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 19:29:45] Arguments: --nthreads 8
[2025-11-26 19:29:45] Threads: 8
[2025-11-26 19:29:45] Checking for CVMFS
[2025-11-26 19:29:46] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 19:29:46] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 19:29:46] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 19:29:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 19:29:46] 2.13.3.0 11460 30772 244608 153341 3 434 29009785 32935936 53384 16776704 0 399300509 99.726 270058421 35435 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 19:29:46] CVMFS is ok
[2025-11-26 19:29:46] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 19:29:46] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 19:29:46] Further information can be found at the LHC@home message board.
[2025-11-26 19:29:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 19:29:46] Checking for apptainer binary...
[2025-11-26 19:29:46] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 19:29:46] Running /usr/bin/apptainer --version
[2025-11-26 19:29:46] apptainer version 1.4.4-1.el9
[2025-11-26 19:29:46] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 19:29:46] c7-3-34.aglt2.org
[2025-11-26 19:29:46] apptainer works
[2025-11-26 19:29:46] Set ATHENA_PROC_NUMBER=8
[2025-11-26 19:29:46] Set ATHENA_CORE_NUMBER=8
[2025-11-26 19:29:46] Starting ATLAS job with PandaID=6897394473
[2025-11-26 19:29:46] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 06:50:36]  *** The last 200 lines of the pilot log: ***
[2025-11-27 06:50:36] 2025-11-27 11:49:59,406 | INFO     | monitor loop #2196: job 0:6897394473 is in state 'finished'
[2025-11-27 06:50:36] 2025-11-27 11:49:59,406 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 06:50:36] 2025-11-27 11:50:00,338 | INFO     | time since job start (40799s) is within the limit (172800.0s)
[2025-11-27 06:50:36] 2025-11-27 11:50:00,685 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 06:50:36] 2025-11-27 11:50:00,710 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3250.827322916665
[2025-11-27 06:50:36] 2025-11-27 11:50:00,899 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6897394473/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 06:50:36] 2025-11-27 11:50:00,899 | INFO     | extracted standard info from prmon json
[2025-11-27 06:50:36] 2025-11-27 11:50:00,899 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 06:50:36] 2025-11-27 11:50:00,899 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 06:50:36] 2025-11-27 11:50:01,003 | INFO     | fitting pss+swap vs Time
[2025-11-27 06:50:36] 2025-11-27 11:50:01,004 | INFO     | sum of square deviations: 92428396046.94603
[2025-11-27 06:50:36] 2025-11-27 11:50:01,197 | INFO     | sum of deviations: 579880446802.0542
[2025-11-27 06:50:36] 2025-11-27 11:50:01,197 | INFO     | mean x: 1764223780.491018
[2025-11-27 06:50:36] 2025-11-27 11:50:01,197 | INFO     | mean y: 2918678.258982036
[2025-11-27 06:50:36] 2025-11-27 11:50:01,198 | INFO     | intersect: -11065529091.518621
[2025-11-27 06:50:36] 2025-11-27 11:50:01,198 | INFO     | chi2: 5.0501729089927485
[2025-11-27 06:50:36] 2025-11-27 11:50:01,199 | INFO     | sum of square deviations: 90368596536.99854
[2025-11-27 06:50:36] 2025-11-27 11:50:01,301 | INFO     | sum of deviations: 779689906112.8263
[2025-11-27 06:50:36] 2025-11-27 11:50:01,302 | INFO     | mean x: 1764223627.9984918
[2025-11-27 06:50:36] 2025-11-27 11:50:01,302 | INFO     | mean y: 2933463.826546003
[2025-11-27 06:50:36] 2025-11-27 11:50:01,302 | INFO     | intersect: -15218586041.71319
[2025-11-27 06:50:36] 2025-11-27 11:50:01,476 | INFO     | chi2: 2.55014097338872
[2025-11-27 06:50:36] 2025-11-27 11:50:01,476 | INFO     | current chi2=2.55014097338872 (change=49.503887899605736 %)
[2025-11-27 06:50:36] 2025-11-27 11:50:01,477 | INFO     | sum of square deviations: 88339594616.48645
[2025-11-27 06:50:36] 2025-11-27 11:50:01,485 | INFO     | sum of deviations: 831732690585.4285
[2025-11-27 06:50:36] 2025-11-27 11:50:01,485 | INFO     | mean x: 1764223475.5045593
[2025-11-27 06:50:36] 2025-11-27 11:50:01,485 | INFO     | mean y: 2937360.8571428573
[2025-11-27 06:50:36] 2025-11-27 11:50:01,485 | INFO     | intersect: -16607534358.485966
[2025-11-27 06:50:36] 2025-11-27 11:50:01,486 | INFO     | chi2: 2.2039256455985137
[2025-11-27 06:50:36] 2025-11-27 11:50:01,486 | INFO     | current chi2=2.2039256455985137 (change=13.576321129029308 %)
[2025-11-27 06:50:36] 2025-11-27 11:50:01,486 | INFO     | right removable region: 657
[2025-11-27 06:50:36] 2025-11-27 11:50:01,486 | INFO     | sum of square deviations: 90368233221.9941
[2025-11-27 06:50:36] 2025-11-27 11:50:01,495 | INFO     | sum of deviations: 417189414003.52374
[2025-11-27 06:50:36] 2025-11-27 11:50:01,495 | INFO     | mean x: 1764223932.9969833
[2025-11-27 06:50:36] 2025-11-27 11:50:01,495 | INFO     | mean y: 2930689.761689291
[2025-11-27 06:50:36] 2025-11-27 11:50:01,495 | INFO     | intersect: -8141696271.904633
[2025-11-27 06:50:36] 2025-11-27 11:50:01,496 | INFO     | chi2: 2.985016958548799
[2025-11-27 06:50:36] 2025-11-27 11:50:01,496 | INFO     | current chi2=2.985016958548799 (change=40.892777092177674 %)
[2025-11-27 06:50:36] 2025-11-27 11:50:01,496 | INFO     | sum of square deviations: 88339070204.49379
[2025-11-27 06:50:36] 2025-11-27 11:50:01,505 | INFO     | sum of deviations: 386521232063.5632
[2025-11-27 06:50:36] 2025-11-27 11:50:01,505 | INFO     | mean x: 1764224085.4969604
[2025-11-27 06:50:36] 2025-11-27 11:50:01,505 | INFO     | mean y: 2932993.0319148935
[2025-11-27 06:50:36] 2025-11-27 11:50:01,505 | INFO     | intersect: -7716302285.129407
[2025-11-27 06:50:36] 2025-11-27 11:50:01,506 | INFO     | chi2: 2.9613988801034057
[2025-11-27 06:50:36] 2025-11-27 11:50:01,506 | INFO     | current chi2=2.9613988801034057 (change=0.7912209134274204 %)
[2025-11-27 06:50:36] 2025-11-27 11:50:01,507 | INFO     | left removable region: 20
[2025-11-27 06:50:36] 2025-11-27 11:50:01,508 | INFO     | sum of square deviations: 80148439856.92316
[2025-11-27 06:50:36] 2025-11-27 11:50:01,586 | INFO     | sum of deviations: 596798306419.1982
[2025-11-27 06:50:36] 2025-11-27 11:50:01,586 | INFO     | mean x: 1764224055.010989
[2025-11-27 06:50:36] 2025-11-27 11:50:01,586 | INFO     | mean y: 2955104.257456829
[2025-11-27 06:50:36] 2025-11-27 11:50:01,586 | INFO     | intersect: -13133743876.460396
[2025-11-27 06:50:36] 2025-11-27 11:50:01,587 | INFO     | chi2: 0.08985435478476232
[2025-11-27 06:50:36] 2025-11-27 11:50:01,587 | INFO     | current memory leak: 7.45 B/s (using 637 data points, chi2=0.09)
[2025-11-27 06:50:36] 2025-11-27 11:50:01,588 | INFO     | could have reported an average CPU frequency of 3198 MHz (26 samples)
[2025-11-27 06:50:36] 2025-11-27 11:50:01,588 | INFO     | ..............................
[2025-11-27 06:50:36] 2025-11-27 11:50:01,588 | INFO     | . Timing measurements:
[2025-11-27 06:50:36] 2025-11-27 11:50:01,588 | INFO     | . get job = 0 s
[2025-11-27 06:50:36] 2025-11-27 11:50:01,588 | INFO     | . initial setup = 2 s
[2025-11-27 06:50:36] 2025-11-27 11:50:01,588 | INFO     | . payload setup = 9 s
[2025-11-27 06:50:36] 2025-11-27 11:50:01,589 | INFO     | . stage-in = 0 s
[2025-11-27 06:50:36] 2025-11-27 11:50:01,589 | INFO     | . payload execution = 40743 s
[2025-11-27 06:50:36] 2025-11-27 11:50:01,589 | INFO     | . stage-out = 10 s
[2025-11-27 06:50:36] 2025-11-27 11:50:01,589 | INFO     | . log creation = 2 s
[2025-11-27 06:50:36] 2025-11-27 11:50:01,589 | INFO     | ..............................
[2025-11-27 06:50:36] 2025-11-27 11:50:01,929 | INFO     | 
[2025-11-27 06:50:36] 2025-11-27 11:50:01,930 | INFO     | job summary report
[2025-11-27 06:50:36] 2025-11-27 11:50:01,930 | INFO     | --------------------------------------------------
[2025-11-27 06:50:36] 2025-11-27 11:50:01,930 | INFO     | PanDA job id: 6897394473
[2025-11-27 06:50:36] 2025-11-27 11:50:01,930 | INFO     | task id: 47556161
[2025-11-27 06:50:36] 2025-11-27 11:50:01,930 | INFO     | errors: (none)
[2025-11-27 06:50:36] 2025-11-27 11:50:01,930 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 06:50:36] 2025-11-27 11:50:01,930 | INFO     | pilot state: finished 
[2025-11-27 06:50:36] 2025-11-27 11:50:01,930 | INFO     | transexitcode: 0
[2025-11-27 06:50:36] 2025-11-27 11:50:01,930 | INFO     | exeerrorcode: 0
[2025-11-27 06:50:36] 2025-11-27 11:50:01,930 | INFO     | exeerrordiag: 
[2025-11-27 06:50:36] 2025-11-27 11:50:01,930 | INFO     | exitcode: 0
[2025-11-27 06:50:36] 2025-11-27 11:50:01,930 | INFO     | exitmsg: OK
[2025-11-27 06:50:36] 2025-11-27 11:50:01,930 | INFO     | cpuconsumptiontime: 199689 s
[2025-11-27 06:50:36] 2025-11-27 11:50:01,930 | INFO     | nevents: 1000
[2025-11-27 06:50:36] 2025-11-27 11:50:01,931 | INFO     | neventsw: 0
[2025-11-27 06:50:36] 2025-11-27 11:50:01,931 | INFO     | pid: 1374396
[2025-11-27 06:50:36] 2025-11-27 11:50:01,931 | INFO     | pgrp: 1374396
[2025-11-27 06:50:36] 2025-11-27 11:50:01,931 | INFO     | corecount: 8
[2025-11-27 06:50:36] 2025-11-27 11:50:01,931 | INFO     | event service: False
[2025-11-27 06:50:36] 2025-11-27 11:50:01,931 | INFO     | sizes: {0: 2284259, 1: 2284259, 7: 2284549, 11: 2284577, 40754: 2328038, 40755: 2328037, 40765: 2337215, 40768: 2337271, 40782: 2337517}
[2025-11-27 06:50:36] 2025-11-27 11:50:01,931 | INFO     | --------------------------------------------------
[2025-11-27 06:50:36] 2025-11-27 11:50:01,931 | INFO     | 
[2025-11-27 06:50:36] 2025-11-27 11:50:01,931 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-27 06:50:36] 2025-11-27 11:50:01,956 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 06:50:36] 2025-11-27 11:50:01,956 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 06:50:36] 2025-11-27 11:50:01,956 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 06:50:36] 2025-11-27 11:50:01,956 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 06:50:36] 2025-11-27 11:50:01,956 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 06:50:36] 2025-11-27 11:50:01,956 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 06:50:36] 2025-11-27 11:50:01,956 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 06:50:36] 2025-11-27 11:50:01,956 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 06:50:36] 2025-11-27 11:50:01,956 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 06:50:36] 2025-11-27 11:50:01,956 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 06:50:36] 2025-11-27 11:50:01,956 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 06:50:36] 2025-11-27 11:50:01,957 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 06:50:36] 2025-11-27 11:50:01,957 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 06:50:36] 2025-11-27 11:50:01,957 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 06:50:36] 2025-11-27 11:50:01,957 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 06:50:36] 2025-11-27 11:50:01,957 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 06:50:36] 2025-11-27 11:50:01,957 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 06:50:36] 2025-11-27 11:50:01,957 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 06:50:36] 2025-11-27 11:50:01,957 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 06:50:36] 2025-11-27 11:50:01,957 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 06:50:36] 2025-11-27 11:50:01,957 | INFO     | job 6897394473 has completed (purged errors)
[2025-11-27 06:50:36] 2025-11-27 11:50:01,957 | INFO     | overall cleanup function is called
[2025-11-27 06:50:36] 2025-11-27 11:50:02,993 | INFO     | --- collectZombieJob: --- 10, [1374396]
[2025-11-27 06:50:36] 2025-11-27 11:50:02,994 | INFO     | zombie collector waiting for pid 1374396
[2025-11-27 06:50:36] 2025-11-27 11:50:02,994 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 06:50:36] 2025-11-27 11:50:02,994 | INFO     | collected zombie processes
[2025-11-27 06:50:36] 2025-11-27 11:50:02,994 | INFO     | will attempt to kill all subprocesses of pid=1374396
[2025-11-27 06:50:36] 2025-11-27 11:50:06,463 | INFO     | process IDs to be killed: [1374396] (in reverse order)
[2025-11-27 06:50:36] 2025-11-27 11:50:06,794 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 06:50:36] 2025-11-27 11:50:06,795 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 06:50:36] 2025-11-27 11:50:06,883 | INFO     | did not find any defunct processes belonging to 1374396
[2025-11-27 06:50:36] 2025-11-27 11:50:06,914 | INFO     | did not find any defunct processes belonging to 1374396
[2025-11-27 06:50:36] 2025-11-27 11:50:06,916 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 06:50:36] 2025-11-27 11:50:06,916 | INFO     | ready for new job
[2025-11-27 06:50:36] 2025-11-27 11:50:06,916 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 06:50:36] 2025-11-27 11:50:06,919 | INFO     | ***************************************
[2025-11-27 06:50:36] 2025-11-27 11:50:06,919 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 06:50:36] 2025-11-27 11:50:06,919 | INFO     | ***************************************
[2025-11-27 06:50:36] 2025-11-27 11:50:06,920 | INFO     | 
[2025-11-27 06:50:36] 2025-11-27 11:50:06,924 | INFO     | architecture information:
[2025-11-27 06:50:36] 2025-11-27 11:50:06,925 | INFO     | executing command: cat /etc/os-release
[2025-11-27 06:50:36] 2025-11-27 11:50:06,971 | INFO     | cat /etc/os-release:
[2025-11-27 06:50:36] NAME="CentOS Linux"
[2025-11-27 06:50:36] VERSION="7 (Core)"
[2025-11-27 06:50:36] ID="centos"
[2025-11-27 06:50:36] ID_LIKE="rhel fedora"
[2025-11-27 06:50:36] VERSION_ID="7"
[2025-11-27 06:50:36] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 06:50:36] ANSI_COLOR="0;31"
[2025-11-27 06:50:36] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 06:50:36] HOME_URL="https://www.centos.org/"
[2025-11-27 06:50:36] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 06:50:36] 
[2025-11-27 06:50:36] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 06:50:36] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 06:50:36] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 06:50:36] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 06:50:36] 
[2025-11-27 06:50:36] 2025-11-27 11:50:06,971 | INFO     | ***************************************
[2025-11-27 06:50:36] 2025-11-27 11:50:07,490 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-27 06:50:36] 2025-11-27 11:50:07,597 | INFO     | sufficient remaining disk space (63942164480 B)
[2025-11-27 06:50:36] 2025-11-27 11:50:07,598 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 06:50:36] 2025-11-27 11:50:07,598 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 06:50:36] 2025-11-27 11:50:07,598 | INFO     | update_server=False
[2025-11-27 06:50:36] 2025-11-27 11:50:07,598 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 06:50:36] 2025-11-27 11:50:07,598 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 06:50:36] 2025-11-27 11:50:08,136 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 06:50:36] 2025-11-27 11:50:08,136 | INFO     | aborting loop
[2025-11-27 06:50:36] 2025-11-27 11:50:08,343 | INFO     | all data control threads have been joined
[2025-11-27 06:50:36] 2025-11-27 11:50:08,606 | INFO     | [job] retrieve thread has finished
[2025-11-27 06:50:36] 2025-11-27 11:50:08,607 | INFO     | [job] queue monitor thread has finished
[2025-11-27 06:50:36] 2025-11-27 11:50:08,663 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 06:50:36] 2025-11-27 11:50:08,666 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 06:50:36] 2025-11-27 11:50:08,689 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 06:50:36] 2025-11-27 11:50:08,771 | INFO     | all job control threads have been joined
[2025-11-27 06:50:36] 2025-11-27 11:50:08,940 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 06:50:36] 2025-11-27 11:50:09,056 | INFO     | [payload] failed_post thread has finished
[2025-11-27 06:50:36] 2025-11-27 11:50:09,122 | INFO     | all payload control threads have been joined
[2025-11-27 06:50:36] 2025-11-27 11:50:09,143 | INFO     | [job] job monitor thread has finished
[2025-11-27 06:50:36] 2025-11-27 11:50:09,209 | INFO     | [data] copytool_in thread has finished
[2025-11-27 06:50:36] 2025-11-27 11:50:09,215 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 06:50:36] 2025-11-27 11:50:09,216 | INFO     | [job] validate thread has finished
[2025-11-27 06:50:36] 2025-11-27 11:50:09,349 | INFO     | [data] control thread has finished
[2025-11-27 06:50:36] 2025-11-27 11:50:09,353 | INFO     | [payload] validate_post thread has finished
[2025-11-27 06:50:36] 2025-11-27 11:50:09,777 | INFO     | [job] control thread has finished
[2025-11-27 06:50:36] 2025-11-27 11:50:09,850 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 06:50:36] 2025-11-27 11:50:10,133 | INFO     | [payload] control thread has finished
[2025-11-27 06:50:36] 2025-11-27 11:50:10,947 | INFO     | [data] copytool_out thread has finished
[2025-11-27 06:50:36] 2025-11-27 11:50:12,676 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 06:50:36] 2025-11-27 11:50:14,671 | INFO     | [monitor] cgroup control has ended
[2025-11-27 06:50:36] 2025-11-27 11:50:16,236 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140489767163712)>', '<ExcThread(monitor, started 140489403635456)>']
[2025-11-27 06:50:36] 2025-11-27 11:50:21,267 | INFO     | all workflow threads have been joined
[2025-11-27 06:50:36] 2025-11-27 11:50:21,267 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 06:50:36] 2025-11-27 11:50:21,267 | INFO     | traces error code: 0
[2025-11-27 06:50:36] 2025-11-27 11:50:21,267 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 06:50:36] 2025-11-27 11:50:35,103 | INFO     | PID=1365939 has CPU usage=5.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 06:50:36] 2025-11-27 11:50:35,106 | INFO     | .. there are 88 such processes running
[2025-11-27 06:50:36] 2025-11-27 11:50:35,108 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 06:50:36] 2025-11-27 11:50:35,108 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 06:50:36] 2025-11-27 11:50:35,108 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 06:50:36] 2025-11-27 11:50:35,108 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 06:50:36] 2025-11-27 11:50:35,108 | INFO     | [monitor] control thread has ended
[2025-11-27 06:50:36] 2025-11-27 11:50:35,725 [wrapper] ==== pilot stdout END ====
[2025-11-27 06:50:36] 2025-11-27 11:50:35,728 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 06:50:36] 2025-11-27 11:50:35,729 [wrapper] pilotpid: 1365939
[2025-11-27 06:50:36] 2025-11-27 11:50:35,731 [wrapper] Pilot exit status: 0
[2025-11-27 06:50:36] 2025-11-27 11:50:35,742 [wrapper] pandaids: 6897394473
[2025-11-27 06:50:36] 2025-11-27 11:50:35,958 [wrapper] cleanup supervisor_pilot 2828616 1365940
[2025-11-27 06:50:36] 2025-11-27 11:50:35,972 [wrapper] Test setup, not cleaning
[2025-11-27 06:50:36] 2025-11-27 11:50:35,975 [wrapper] apfmon messages muted
[2025-11-27 06:50:36] 2025-11-27 11:50:36,002 [wrapper] ==== wrapper stdout END ====
[2025-11-27 06:50:36] 2025-11-27 11:50:36,028 [wrapper] ==== wrapper stderr END ====
[2025-11-27 06:50:36]  *** Error codes and diagnostics ***
[2025-11-27 06:50:36]     "exeErrorCode": 0,
[2025-11-27 06:50:36]     "exeErrorDiag": "",
[2025-11-27 06:50:36]     "pilotErrorCode": 0,
[2025-11-27 06:50:36]     "pilotErrorDiag": "",
[2025-11-27 06:50:36]  *** Listing of results directory ***
[2025-11-27 06:50:36] total 1322164
[2025-11-27 06:50:36] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 11:48 pilot3.tar.gz
[2025-11-27 06:50:36] -rwx------. 1 boincer umatlas     36292 Nov 25 11:55 runpilot2-wrapper.sh
[2025-11-27 06:50:36] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 11:55 queuedata.json
[2025-11-27 06:50:36] -rw-r--r--. 1 boincer umatlas       100 Nov 26 19:29 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 06:50:36] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 19:29 run_atlas
[2025-11-27 06:50:36] -rw-r--r--. 1 boincer umatlas       105 Nov 26 19:29 job.xml
[2025-11-27 06:50:36] -rw-r--r--. 2 boincer umatlas 411310506 Nov 26 19:29 EVNT.47483658._002220.pool.root.1
[2025-11-27 06:50:36] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 19:29 start_atlas.sh
[2025-11-27 06:50:36] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 19:29 shared
[2025-11-27 06:50:36] -rw-r--r--. 2 boincer umatlas    590106 Nov 26 19:29 input.tar.gz
[2025-11-27 06:50:36] -rw-r--r--. 1 boincer umatlas         0 Nov 26 19:29 boinc_lockfile
[2025-11-27 06:50:36] -rw-r--r--. 1 boincer umatlas      2783 Nov 26 19:29 pandaJob.out
[2025-11-27 06:50:36] -rw-------. 1 boincer umatlas        57 Nov 26 19:29 setup.sh.local
[2025-11-27 06:50:36] -rw-------. 1 boincer umatlas    991546 Nov 26 19:29 agis_schedconf.cvmfs.json
[2025-11-27 06:50:36] drwx------. 5 boincer umatlas      4096 Nov 26 19:30 pilot3
[2025-11-27 06:50:36] -rw-r--r--. 1 boincer umatlas       532 Nov 27 06:39 boinc_task_state.xml
[2025-11-27 06:50:36] -rw-r--r--. 1 boincer umatlas      6948 Nov 27 06:46 init_data.xml
[2025-11-27 06:50:36] -rw-------. 1 boincer umatlas 925269233 Nov 27 06:49 HITS.47556161._002031.pool.root.1
[2025-11-27 06:50:36] -rw-------. 1 boincer umatlas      1067 Nov 27 06:49 memory_monitor_summary.json
[2025-11-27 06:50:36] -rw-------. 1 boincer umatlas   1516240 Nov 27 06:49 agis_ddmendpoints.agis.ALL.json
[2025-11-27 06:50:36] -rw-------. 1 boincer umatlas   1865081 Nov 27 06:49 log.47556161._002031.job.log.tgz.1
[2025-11-27 06:50:36] -rw-------. 1 boincer umatlas      8603 Nov 27 06:50 heartbeat.json
[2025-11-27 06:50:36] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 06:50 boinc_mmap_file
[2025-11-27 06:50:36] -rw-------. 1 boincer umatlas        95 Nov 27 06:50 pilot_heartbeat.json
[2025-11-27 06:50:36] -rw-------. 1 boincer umatlas       823 Nov 27 06:50 pilotlog.txt
[2025-11-27 06:50:36] -rw-r--r--. 1 boincer umatlas        29 Nov 27 06:50 wrapper_checkpoint.txt
[2025-11-27 06:50:36] -rw-------. 1 boincer umatlas   4836565 Nov 27 06:50 log.47556161._002031.job.log.1
[2025-11-27 06:50:36] -rw-------. 1 boincer umatlas       353 Nov 27 06:50 output.list
[2025-11-27 06:50:36] -rw-r--r--. 1 boincer umatlas       620 Nov 27 06:50 runtime_log
[2025-11-27 06:50:36] -rw-------. 1 boincer umatlas   6717440 Nov 27 06:50 result.tar.gz
[2025-11-27 06:50:36] -rw-r--r--. 1 boincer umatlas      9338 Nov 27 06:50 runtime_log.err
[2025-11-27 06:50:36] -rw-------. 1 boincer umatlas       662 Nov 27 06:50 dTnKDmSVBi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmiUJKDmZefBKm.diag
[2025-11-27 06:50:36] -rw-r--r--. 1 boincer umatlas     21354 Nov 27 06:50 stderr.txt
[2025-11-27 06:50:36] HITS file was successfully produced:
[2025-11-27 06:50:36] -rw-------. 1 boincer umatlas 925269233 Nov 27 06:49 shared/HITS.pool.root.1
[2025-11-27 06:50:36]  *** Contents of shared directory: ***
[2025-11-27 06:50:36] total 1312420
[2025-11-27 06:50:36] -rw-r--r--. 2 boincer umatlas 411310506 Nov 26 19:29 ATLAS.root_0
[2025-11-27 06:50:36] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 19:29 start_atlas.sh
[2025-11-27 06:50:36] -rw-r--r--. 2 boincer umatlas    590106 Nov 26 19:29 input.tar.gz
[2025-11-27 06:50:36] -rw-------. 1 boincer umatlas 925269233 Nov 27 06:49 HITS.pool.root.1
[2025-11-27 06:50:36] -rw-------. 1 boincer umatlas   6717440 Nov 27 06:50 result.tar.gz
06:50:38 (1362026): run_atlas exited; CPU time 200645.846605
06:50:38 (1362026): called boinc_finish(0)

</stderr_txt>
]]>

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