Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
09:45:45 (308895): wrapper (7.7.26015): starting
09:45:45 (308895): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 09:45:45] Arguments: --nthreads 8
[2025-11-26 09:45:45] Threads: 8
[2025-11-26 09:45:45] Checking for CVMFS
[2025-11-26 09:45:45] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 09:45:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 09:45:45] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 09:45:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 09:45:46] 2.13.3.0 11460 30188 254136 153324 2 501 20600289 32935936 53730 16776704 0 386416436 99.725 260962006 35398 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 09:45:46] CVMFS is ok
[2025-11-26 09:45:46] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 09:45:46] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 09:45:46] Further information can be found at the LHC@home message board.
[2025-11-26 09:45:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 09:45:46] Checking for apptainer binary...
[2025-11-26 09:45:46] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 09:45:46] Running /usr/bin/apptainer --version
[2025-11-26 09:45:46] apptainer version 1.4.4-1.el9
[2025-11-26 09:45:46] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 09:45:47] c7-3-34.aglt2.org
[2025-11-26 09:45:47] apptainer works
[2025-11-26 09:45:47] Set ATHENA_PROC_NUMBER=8
[2025-11-26 09:45:47] Set ATHENA_CORE_NUMBER=8
[2025-11-26 09:45:47] Starting ATLAS job with PandaID=6897881446
[2025-11-26 09:45:47] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 14:55:18]  *** The last 200 lines of the pilot log: ***
[2025-11-27 14:55:18] 2025-11-27 19:54:36,863 | INFO     | this job has now completed (state=finished)
[2025-11-27 14:55:18] 2025-11-27 19:54:36,863 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-11-27 14:55:18] 2025-11-27 19:54:36,863 | INFO     | log transfer has been attempted: DONE
[2025-11-27 14:55:18] 2025-11-27 19:54:36,864 | INFO     | job 6897881446 has finished - writing final server update
[2025-11-27 14:55:18] 2025-11-27 19:54:36,864 | INFO     | total number of processed events: 1000 (read)
[2025-11-27 14:55:18] 2025-11-27 19:54:36,864 | INFO     | executing command: lscpu
[2025-11-27 14:55:18] 2025-11-27 19:54:36,863 | INFO     | time since job start (104907s) is within the limit (172800.0s)
[2025-11-27 14:55:18] 2025-11-27 19:54:36,951 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-27 14:55:18] 2025-11-27 19:54:38,881 | INFO     | time since job start (104909s) is within the limit (172800.0s)
[2025-11-27 14:55:18] 2025-11-27 19:54:39,022 | INFO     | monitor loop #6217: job 0:6897881446 is in state 'finished'
[2025-11-27 14:55:18] 2025-11-27 19:54:39,023 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 14:55:18] 2025-11-27 19:54:40,889 | INFO     | time since job start (104911s) is within the limit (172800.0s)
[2025-11-27 14:55:18] 2025-11-27 19:54:41,526 | INFO     | monitor loop #6218: job 0:6897881446 is in state 'finished'
[2025-11-27 14:55:18] 2025-11-27 19:54:41,527 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 14:55:18] 2025-11-27 19:54:42,909 | INFO     | time since job start (104913s) is within the limit (172800.0s)
[2025-11-27 14:55:18] 2025-11-27 19:54:44,036 | INFO     | monitor loop #6219: job 0:6897881446 is in state 'finished'
[2025-11-27 14:55:18] 2025-11-27 19:54:44,036 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 14:55:18] 2025-11-27 19:54:44,099 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 14:55:18] 2025-11-27 19:54:44,105 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3317.9131354166657
[2025-11-27 14:55:18] 2025-11-27 19:54:44,125 | INFO     | using path: /tmp/boinchome/slots/4/PanDA_Pilot-6897881446/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 14:55:18] 2025-11-27 19:54:44,126 | INFO     | extracted standard info from prmon json
[2025-11-27 14:55:18] 2025-11-27 19:54:44,126 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 14:55:18] 2025-11-27 19:54:44,126 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 14:55:18] 2025-11-27 19:54:44,181 | INFO     | fitting pss+swap vs Time
[2025-11-27 14:55:18] 2025-11-27 19:54:44,184 | INFO     | sum of square deviations: 1575142855950.9817
[2025-11-27 14:55:18] 2025-11-27 19:54:44,244 | INFO     | sum of deviations: 8872995311912.213
[2025-11-27 14:55:18] 2025-11-27 19:54:44,245 | INFO     | mean x: 1764220818.958115
[2025-11-27 14:55:18] 2025-11-27 19:54:44,245 | INFO     | mean y: 4864239.76672484
[2025-11-27 14:55:18] 2025-11-27 19:54:44,245 | INFO     | intersect: -9933233118.610544
[2025-11-27 14:55:18] 2025-11-27 19:54:44,246 | INFO     | chi2: 23.482867540742856
[2025-11-27 14:55:18] 2025-11-27 19:54:44,248 | INFO     | sum of square deviations: 1561439036213.8794
[2025-11-27 14:55:18] 2025-11-27 19:54:44,334 | INFO     | sum of deviations: 9885951686561.22
[2025-11-27 14:55:18] 2025-11-27 19:54:44,334 | INFO     | mean x: 1764220666.46091
[2025-11-27 14:55:18] 2025-11-27 19:54:44,335 | INFO     | mean y: 4875509.771878647
[2025-11-27 14:55:18] 2025-11-27 19:54:44,335 | INFO     | intersect: -11164949163.854635
[2025-11-27 14:55:18] 2025-11-27 19:54:44,336 | INFO     | chi2: 20.217506041940837
[2025-11-27 14:55:18] 2025-11-27 19:54:44,336 | INFO     | current chi2=20.217506041940837 (change=13.905292840138051 %)
[2025-11-27 14:55:18] 2025-11-27 19:54:44,336 | INFO     | right removable region: 1713
[2025-11-27 14:55:18] 2025-11-27 19:54:44,337 | INFO     | sum of square deviations: 1561438031543.8809
[2025-11-27 14:55:18] 2025-11-27 19:54:44,391 | INFO     | sum of deviations: 7728425276922.828
[2025-11-27 14:55:18] 2025-11-27 19:54:44,392 | INFO     | mean x: 1764220971.46091
[2025-11-27 14:55:18] 2025-11-27 19:54:44,392 | INFO     | mean y: 4876975.064760793
[2025-11-27 14:55:18] 2025-11-27 19:54:44,392 | INFO     | intersect: -8727233857.687601
[2025-11-27 14:55:18] 2025-11-27 19:54:44,393 | INFO     | chi2: 19.206290549533147
[2025-11-27 14:55:18] 2025-11-27 19:54:44,393 | INFO     | current chi2=19.206290549533147 (change=18.211476872617165 %)
[2025-11-27 14:55:18] 2025-11-27 19:54:44,393 | INFO     | left removable region: 10
[2025-11-27 14:55:18] 2025-11-27 19:54:44,395 | INFO     | sum of square deviations: 1531568918940.1562
[2025-11-27 14:55:18] 2025-11-27 19:54:44,472 | INFO     | sum of deviations: 7783711312639.335
[2025-11-27 14:55:18] 2025-11-27 19:54:44,472 | INFO     | mean x: 1764220940.9671168
[2025-11-27 14:55:18] 2025-11-27 19:54:44,472 | INFO     | mean y: 4901263.2918379335
[2025-11-27 14:55:18] 2025-11-27 19:54:44,472 | INFO     | intersect: -8961189864.81986
[2025-11-27 14:55:18] 2025-11-27 19:54:44,474 | INFO     | chi2: 12.156507717271884
[2025-11-27 14:55:18] 2025-11-27 19:54:44,474 | INFO     | current memory leak: 5.08 B/s (using 1703 data points, chi2=12.16)
[2025-11-27 14:55:18] 2025-11-27 19:54:44,475 | INFO     | could have reported an average CPU frequency of 3194 MHz (61 samples)
[2025-11-27 14:55:18] 2025-11-27 19:54:44,475 | INFO     | ..............................
[2025-11-27 14:55:18] 2025-11-27 19:54:44,476 | INFO     | . Timing measurements:
[2025-11-27 14:55:18] 2025-11-27 19:54:44,476 | INFO     | . get job = 0 s
[2025-11-27 14:55:18] 2025-11-27 19:54:44,476 | INFO     | . initial setup = 3 s
[2025-11-27 14:55:18] 2025-11-27 19:54:44,476 | INFO     | . payload setup = 16 s
[2025-11-27 14:55:18] 2025-11-27 19:54:44,476 | INFO     | . stage-in = 0 s
[2025-11-27 14:55:18] 2025-11-27 19:54:44,476 | INFO     | . payload execution = 104850 s
[2025-11-27 14:55:18] 2025-11-27 19:54:44,476 | INFO     | . stage-out = 10 s
[2025-11-27 14:55:18] 2025-11-27 19:54:44,476 | INFO     | . log creation = 1 s
[2025-11-27 14:55:18] 2025-11-27 19:54:44,476 | INFO     | ..............................
[2025-11-27 14:55:18] 2025-11-27 19:54:44,780 | INFO     | 
[2025-11-27 14:55:18] 2025-11-27 19:54:44,780 | INFO     | job summary report
[2025-11-27 14:55:18] 2025-11-27 19:54:44,780 | INFO     | --------------------------------------------------
[2025-11-27 14:55:18] 2025-11-27 19:54:44,780 | INFO     | PanDA job id: 6897881446
[2025-11-27 14:55:18] 2025-11-27 19:54:44,780 | INFO     | task id: 47556173
[2025-11-27 14:55:18] 2025-11-27 19:54:44,780 | INFO     | errors: (none)
[2025-11-27 14:55:18] 2025-11-27 19:54:44,780 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 14:55:18] 2025-11-27 19:54:44,780 | INFO     | pilot state: finished 
[2025-11-27 14:55:18] 2025-11-27 19:54:44,780 | INFO     | transexitcode: 0
[2025-11-27 14:55:18] 2025-11-27 19:54:44,781 | INFO     | exeerrorcode: 0
[2025-11-27 14:55:18] 2025-11-27 19:54:44,781 | INFO     | exeerrordiag: 
[2025-11-27 14:55:18] 2025-11-27 19:54:44,781 | INFO     | exitcode: 0
[2025-11-27 14:55:18] 2025-11-27 19:54:44,781 | INFO     | exitmsg: OK
[2025-11-27 14:55:18] 2025-11-27 19:54:44,781 | INFO     | cpuconsumptiontime: 203033 s
[2025-11-27 14:55:18] 2025-11-27 19:54:44,781 | INFO     | nevents: 1000
[2025-11-27 14:55:18] 2025-11-27 19:54:44,781 | INFO     | neventsw: 0
[2025-11-27 14:55:18] 2025-11-27 19:54:44,781 | INFO     | pid: 337931
[2025-11-27 14:55:18] 2025-11-27 19:54:44,781 | INFO     | pgrp: 337931
[2025-11-27 14:55:18] 2025-11-27 19:54:44,781 | INFO     | corecount: 8
[2025-11-27 14:55:18] 2025-11-27 19:54:44,781 | INFO     | event service: False
[2025-11-27 14:55:18] 2025-11-27 19:54:44,781 | INFO     | sizes: {0: 2284264, 9: 2284526, 11: 2284554, 104872: 2359004, 104883: 2368026, 104886: 2368082, 104894: 2368456}
[2025-11-27 14:55:18] 2025-11-27 19:54:44,781 | INFO     | --------------------------------------------------
[2025-11-27 14:55:18] 2025-11-27 19:54:44,781 | INFO     | 
[2025-11-27 14:55:18] 2025-11-27 19:54:44,781 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2025-11-27 14:55:18] 2025-11-27 19:54:44,804 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 14:55:18] 2025-11-27 19:54:44,805 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 14:55:18] 2025-11-27 19:54:44,805 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 14:55:18] 2025-11-27 19:54:44,805 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 14:55:18] 2025-11-27 19:54:44,805 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 14:55:18] 2025-11-27 19:54:44,805 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 14:55:18] 2025-11-27 19:54:44,805 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 14:55:18] 2025-11-27 19:54:44,805 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 14:55:18] 2025-11-27 19:54:44,805 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 14:55:18] 2025-11-27 19:54:44,805 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 14:55:18] 2025-11-27 19:54:44,805 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 14:55:18] 2025-11-27 19:54:44,805 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 14:55:18] 2025-11-27 19:54:44,806 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 14:55:18] 2025-11-27 19:54:44,806 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 14:55:18] 2025-11-27 19:54:44,806 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 14:55:18] 2025-11-27 19:54:44,806 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 14:55:18] 2025-11-27 19:54:44,806 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 14:55:18] 2025-11-27 19:54:44,806 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 14:55:18] 2025-11-27 19:54:44,806 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 14:55:18] 2025-11-27 19:54:44,806 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 14:55:18] 2025-11-27 19:54:44,806 | INFO     | job 6897881446 has completed (purged errors)
[2025-11-27 14:55:18] 2025-11-27 19:54:44,806 | INFO     | overall cleanup function is called
[2025-11-27 14:55:18] 2025-11-27 19:54:45,825 | INFO     | --- collectZombieJob: --- 10, [337931]
[2025-11-27 14:55:18] 2025-11-27 19:54:45,826 | INFO     | zombie collector waiting for pid 337931
[2025-11-27 14:55:18] 2025-11-27 19:54:45,826 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 14:55:18] 2025-11-27 19:54:45,826 | INFO     | collected zombie processes
[2025-11-27 14:55:18] 2025-11-27 19:54:45,826 | INFO     | will attempt to kill all subprocesses of pid=337931
[2025-11-27 14:55:18] 2025-11-27 19:54:46,978 | INFO     | process IDs to be killed: [337931] (in reverse order)
[2025-11-27 14:55:18] 2025-11-27 19:54:47,235 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 14:55:18] 2025-11-27 19:54:47,235 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 14:55:18] 2025-11-27 19:54:47,274 | INFO     | did not find any defunct processes belonging to 337931
[2025-11-27 14:55:18] 2025-11-27 19:54:47,309 | INFO     | did not find any defunct processes belonging to 337931
[2025-11-27 14:55:18] 2025-11-27 19:54:47,310 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 14:55:18] 2025-11-27 19:54:47,310 | INFO     | ready for new job
[2025-11-27 14:55:18] 2025-11-27 19:54:47,310 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 14:55:18] 2025-11-27 19:54:47,335 | INFO     | ***************************************
[2025-11-27 14:55:18] 2025-11-27 19:54:47,335 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 14:55:18] 2025-11-27 19:54:47,336 | INFO     | ***************************************
[2025-11-27 14:55:18] 2025-11-27 19:54:47,336 | INFO     | 
[2025-11-27 14:55:18] 2025-11-27 19:54:47,348 | INFO     | architecture information:
[2025-11-27 14:55:18] 2025-11-27 19:54:47,354 | INFO     | executing command: cat /etc/os-release
[2025-11-27 14:55:18] 2025-11-27 19:54:47,373 | INFO     | cat /etc/os-release:
[2025-11-27 14:55:18] NAME="CentOS Linux"
[2025-11-27 14:55:18] VERSION="7 (Core)"
[2025-11-27 14:55:18] ID="centos"
[2025-11-27 14:55:18] ID_LIKE="rhel fedora"
[2025-11-27 14:55:18] VERSION_ID="7"
[2025-11-27 14:55:18] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 14:55:18] ANSI_COLOR="0;31"
[2025-11-27 14:55:18] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 14:55:18] HOME_URL="https://www.centos.org/"
[2025-11-27 14:55:18] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 14:55:18] 
[2025-11-27 14:55:18] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 14:55:18] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 14:55:18] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 14:55:18] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 14:55:18] 
[2025-11-27 14:55:18] 2025-11-27 19:54:47,374 | INFO     | ***************************************
[2025-11-27 14:55:18] 2025-11-27 19:54:47,878 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2025-11-27 14:55:18] 2025-11-27 19:54:47,906 | INFO     | sufficient remaining disk space (69316116480 B)
[2025-11-27 14:55:18] 2025-11-27 19:54:47,907 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 14:55:18] 2025-11-27 19:54:47,907 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 14:55:18] 2025-11-27 19:54:47,907 | INFO     | update_server=False
[2025-11-27 14:55:18] 2025-11-27 19:54:47,907 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 14:55:18] 2025-11-27 19:54:47,908 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 14:55:18] 2025-11-27 19:54:47,909 | INFO     | aborting loop
[2025-11-27 14:55:18] 2025-11-27 19:54:48,508 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 14:55:18] 2025-11-27 19:54:48,552 | INFO     | all data control threads have been joined
[2025-11-27 14:55:18] 2025-11-27 19:54:48,902 | INFO     | all payload control threads have been joined
[2025-11-27 14:55:18] 2025-11-27 19:54:48,913 | INFO     | [job] retrieve thread has finished
[2025-11-27 14:55:18] 2025-11-27 19:54:48,914 | INFO     | [job] job monitor thread has finished
[2025-11-27 14:55:18] 2025-11-27 19:54:48,917 | INFO     | [payload] validate_post thread has finished
[2025-11-27 14:55:18] 2025-11-27 19:54:49,007 | INFO     | all job control threads have been joined
[2025-11-27 14:55:18] 2025-11-27 19:54:49,113 | INFO     | [job] validate thread has finished
[2025-11-27 14:55:18] 2025-11-27 19:54:49,426 | INFO     | [data] copytool_in thread has finished
[2025-11-27 14:55:18] 2025-11-27 19:54:49,434 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 14:55:18] 2025-11-27 19:54:49,558 | INFO     | [data] control thread has finished
[2025-11-27 14:55:18] 2025-11-27 19:54:49,581 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 14:55:18] 2025-11-27 19:54:49,630 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 14:55:18] 2025-11-27 19:54:49,772 | INFO     | [payload] failed_post thread has finished
[2025-11-27 14:55:18] 2025-11-27 19:54:49,907 | INFO     | [payload] control thread has finished
[2025-11-27 14:55:18] 2025-11-27 19:54:49,950 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 14:55:18] 2025-11-27 19:54:50,012 | INFO     | [job] control thread has finished
[2025-11-27 14:55:18] 2025-11-27 19:54:50,303 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 14:55:18] 2025-11-27 19:54:50,514 | INFO     | [data] copytool_out thread has finished
[2025-11-27 14:55:18] 2025-11-27 19:54:50,587 | INFO     | [job] queue monitor thread has finished
[2025-11-27 14:55:18] 2025-11-27 19:54:51,254 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 14:55:18] 2025-11-27 19:54:55,263 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 14:55:18] 2025-11-27 19:55:12,683 | INFO     | [monitor] cgroup control has ended
[2025-11-27 14:55:18] 2025-11-27 19:55:13,346 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140613744199488)>', '<ExcThread(monitor, started 140613253060352)>']
[2025-11-27 14:55:18] 2025-11-27 19:55:16,938 | INFO     | PID=317773 has CPU usage=9.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-27 14:55:18] 2025-11-27 19:55:16,938 | INFO     | .. there are 92 such processes running
[2025-11-27 14:55:18] 2025-11-27 19:55:16,939 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 14:55:18] 2025-11-27 19:55:16,939 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 14:55:18] 2025-11-27 19:55:16,939 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 14:55:18] 2025-11-27 19:55:16,939 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 14:55:18] 2025-11-27 19:55:16,939 | INFO     | [monitor] control thread has ended
[2025-11-27 14:55:18] 2025-11-27 19:55:18,376 | INFO     | all workflow threads have been joined
[2025-11-27 14:55:18] 2025-11-27 19:55:18,376 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 14:55:18] 2025-11-27 19:55:18,377 | INFO     | traces error code: 0
[2025-11-27 14:55:18] 2025-11-27 19:55:18,377 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 14:55:18] 2025-11-27 19:55:18,597 [wrapper] ==== pilot stdout END ====
[2025-11-27 14:55:18] 2025-11-27 19:55:18,603 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 14:55:18] 2025-11-27 19:55:18,609 [wrapper] pilotpid: 317773
[2025-11-27 14:55:18] 2025-11-27 19:55:18,612 [wrapper] Pilot exit status: 0
[2025-11-27 14:55:18] 2025-11-27 19:55:18,626 [wrapper] pandaids: 6897881446
[2025-11-27 14:55:18] 2025-11-27 19:55:18,796 [wrapper] cleanup supervisor_pilot 1801432 317774
[2025-11-27 14:55:18] 2025-11-27 19:55:18,798 [wrapper] Test setup, not cleaning
[2025-11-27 14:55:18] 2025-11-27 19:55:18,801 [wrapper] apfmon messages muted
[2025-11-27 14:55:18] 2025-11-27 19:55:18,806 [wrapper] ==== wrapper stdout END ====
[2025-11-27 14:55:18] 2025-11-27 19:55:18,810 [wrapper] ==== wrapper stderr END ====
[2025-11-27 14:55:18]  *** Error codes and diagnostics ***
[2025-11-27 14:55:18]     "exeErrorCode": 0,
[2025-11-27 14:55:18]     "exeErrorDiag": "",
[2025-11-27 14:55:18]     "pilotErrorCode": 0,
[2025-11-27 14:55:18]     "pilotErrorDiag": "",
[2025-11-27 14:55:18]  *** Listing of results directory ***
[2025-11-27 14:55:18] total 1342380
[2025-11-27 14:55:18] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 20:44 pilot3.tar.gz
[2025-11-27 14:55:18] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 21:07 queuedata.json
[2025-11-27 14:55:18] -rwx------. 1 boincer umatlas     36292 Nov 25 21:10 runpilot2-wrapper.sh
[2025-11-27 14:55:18] -rw-r--r--. 1 boincer umatlas       100 Nov 26 09:45 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 14:55:18] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 09:45 run_atlas
[2025-11-27 14:55:18] -rw-r--r--. 1 boincer umatlas       105 Nov 26 09:45 job.xml
[2025-11-27 14:55:18] -rw-r--r--. 2 boincer umatlas 411192471 Nov 26 09:45 EVNT.47483658._003148.pool.root.1
[2025-11-27 14:55:18] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 09:45 start_atlas.sh
[2025-11-27 14:55:18] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 09:45 shared
[2025-11-27 14:55:18] -rw-r--r--. 2 boincer umatlas    590106 Nov 26 09:45 input.tar.gz
[2025-11-27 14:55:18] -rw-r--r--. 1 boincer umatlas         0 Nov 26 09:45 boinc_lockfile
[2025-11-27 14:55:18] -rw-r--r--. 1 boincer umatlas      2785 Nov 26 09:45 pandaJob.out
[2025-11-27 14:55:18] -rw-------. 1 boincer umatlas        57 Nov 26 09:45 setup.sh.local
[2025-11-27 14:55:18] -rw-------. 1 boincer umatlas    992360 Nov 26 09:46 agis_schedconf.cvmfs.json
[2025-11-27 14:55:18] drwx------. 5 boincer umatlas      4096 Nov 26 09:46 pilot3
[2025-11-27 14:55:18] -rw-r--r--. 1 boincer umatlas       533 Nov 27 14:46 boinc_task_state.xml
[2025-11-27 14:55:18] -rw-------. 1 boincer umatlas 928046008 Nov 27 14:53 HITS.47556173._001044.pool.root.1
[2025-11-27 14:55:18] -rw-------. 1 boincer umatlas      1079 Nov 27 14:54 memory_monitor_summary.json
[2025-11-27 14:55:18] -rw-------. 1 boincer umatlas        95 Nov 27 14:54 pilot_heartbeat.json
[2025-11-27 14:55:18] -rw-r--r--. 1 boincer umatlas      6948 Nov 27 14:54 init_data.xml
[2025-11-27 14:55:18] -rw-------. 1 boincer umatlas   1516240 Nov 27 14:54 agis_ddmendpoints.agis.ALL.json
[2025-11-27 14:55:18] -rw-------. 1 boincer umatlas   2661626 Nov 27 14:54 log.47556173._001044.job.log.tgz.1
[2025-11-27 14:55:18] -rw-------. 1 boincer umatlas      8637 Nov 27 14:54 heartbeat.json
[2025-11-27 14:55:18] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 14:55 boinc_mmap_file
[2025-11-27 14:55:18] -rw-r--r--. 1 boincer umatlas        29 Nov 27 14:55 wrapper_checkpoint.txt
[2025-11-27 14:55:18] -rw-------. 1 boincer umatlas      4823 Nov 27 14:55 pilotlog.txt
[2025-11-27 14:55:18] -rw-------. 1 boincer umatlas  13056718 Nov 27 14:55 log.47556173._001044.job.log.1
[2025-11-27 14:55:18] -rw-------. 1 boincer umatlas       353 Nov 27 14:55 output.list
[2025-11-27 14:55:18] -rw-r--r--. 1 boincer umatlas       620 Nov 27 14:55 runtime_log
[2025-11-27 14:55:18] -rw-------. 1 boincer umatlas  15738880 Nov 27 14:55 result.tar.gz
[2025-11-27 14:55:18] -rw-r--r--. 1 boincer umatlas      9339 Nov 27 14:55 runtime_log.err
[2025-11-27 14:55:18] -rw-------. 1 boincer umatlas       670 Nov 27 14:55 58ZMDmDAKi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmDmJKDmMCicJo.diag
[2025-11-27 14:55:18] -rw-r--r--. 1 boincer umatlas     21744 Nov 27 14:55 stderr.txt
[2025-11-27 14:55:19] HITS file was successfully produced:
[2025-11-27 14:55:19] -rw-------. 1 boincer umatlas 928046008 Nov 27 14:53 shared/HITS.pool.root.1
[2025-11-27 14:55:19]  *** Contents of shared directory: ***
[2025-11-27 14:55:19] total 1323828
[2025-11-27 14:55:19] -rw-r--r--. 2 boincer umatlas 411192471 Nov 26 09:45 ATLAS.root_0
[2025-11-27 14:55:19] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 09:45 start_atlas.sh
[2025-11-27 14:55:19] -rw-r--r--. 2 boincer umatlas    590106 Nov 26 09:45 input.tar.gz
[2025-11-27 14:55:19] -rw-------. 1 boincer umatlas 928046008 Nov 27 14:53 HITS.pool.root.1
[2025-11-27 14:55:19] -rw-------. 1 boincer umatlas  15738880 Nov 27 14:55 result.tar.gz
14:55:21 (308895): run_atlas exited; CPU time 207182.320973
14:55:21 (308895): called boinc_finish(0)

</stderr_txt>
]]>

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