Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
06:28:45 (1184271): wrapper (7.7.26015): starting
06:28:45 (1184271): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 06:28:45] Arguments: --nthreads 8
[2025-11-26 06:28:45] Threads: 8
[2025-11-26 06:28:45] Checking for CVMFS
[2025-11-26 06:28:46] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 06:28:46] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 06:28:46] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 06:28:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 06:28:46] 2.11.3.0 718400 28506 233156 153324 2 375 41949629 45568001 13888 130560 0 183209118 99.778 115825817 20442 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-11-26 06:28:46] CVMFS is ok
[2025-11-26 06:28:46] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 06:28:46] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 06:28:46] Further information can be found at the LHC@home message board.
[2025-11-26 06:28:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 06:28:46] Checking for apptainer binary...
[2025-11-26 06:28:46] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 06:28:46] Running /usr/bin/apptainer --version
[2025-11-26 06:28:46] apptainer version 1.4.1-1.el9
[2025-11-26 06:28:46] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 06:28:46] wns0014.triumf.lcg
[2025-11-26 06:28:46] apptainer works
[2025-11-26 06:28:46] Set ATHENA_PROC_NUMBER=8
[2025-11-26 06:28:46] Set ATHENA_CORE_NUMBER=8
[2025-11-26 06:28:46] Starting ATLAS job with PandaID=6897881367
[2025-11-26 06:28:46] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 06:34:21]  *** The last 200 lines of the pilot log: ***
[2025-11-26 06:34:22] 2025-11-26 14:33:48,028 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-26 06:34:22] 2025-11-26 14:33:48,029 | WARNING  | wrong length of table data, x=[1764167394.0, 1764167455.0], y=[896.0, 391246.0] (must be same and length>=4)
[2025-11-26 06:34:22] 2025-11-26 14:33:48,029 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-11-26 06:34:22] 2025-11-26 14:33:48,029 | INFO     | ..............................
[2025-11-26 06:34:22] 2025-11-26 14:33:48,030 | INFO     | . Timing measurements:
[2025-11-26 06:34:22] 2025-11-26 14:33:48,030 | INFO     | . get job = 0 s
[2025-11-26 06:34:22] 2025-11-26 14:33:48,030 | INFO     | . initial setup = 3 s
[2025-11-26 06:34:22] 2025-11-26 14:33:48,030 | INFO     | . payload setup = 13 s
[2025-11-26 06:34:22] 2025-11-26 14:33:48,030 | INFO     | . stage-in = 0 s
[2025-11-26 06:34:22] 2025-11-26 14:33:48,030 | INFO     | . payload execution = 118 s
[2025-11-26 06:34:22] 2025-11-26 14:33:48,030 | INFO     | . stage-out = 0 s
[2025-11-26 06:34:22] 2025-11-26 14:33:48,030 | INFO     | . log creation = 0 s
[2025-11-26 06:34:22] 2025-11-26 14:33:48,030 | INFO     | ..............................
[2025-11-26 06:34:22] 2025-11-26 14:33:48,030 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-26 06:34:22] 2025-11-26 14:33:48,030 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6897881367/pilotlog.txt
[2025-11-26 06:34:22] 2025-11-26 14:33:48,053 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-26 06:34:22] - Log from pilotlog.txt -
[2025-11-26 06:34:22] 2025-11-26 14:33:48,027 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6897881367/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 06:34:22] 2025-11-26 14:33:48,028 | INFO     | extracted standard info from prmon json
[2025-11-26 06:34:22] 2025-11-26 14:33:48,028 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 06:34:22] 2025-11-26 14:33:48,028 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 06:34:22] 2025-11-26 14:33:48,028 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-26 06:34:22] 2025-11-26 14:33:48,028 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-26 06:34:22] 2025-11-26 14:33:48,029 | WARNING  | wrong length of table data, x=[1764167394.0, 1764167455.0], y=[896.0, 391246.0] (must be same and length>=4)
[2025-11-26 06:34:22] 2025-11-26 14:33:48,029 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-11-26 06:34:22] 2025-11-26 14:33:48,029 | INFO     | ..............................
[2025-11-26 06:34:22] 2025-11-26 14:33:48,030 | INFO     | . Timing measurements:
[2025-11-26 06:34:22] 2025-11-26 14:33:48,030 | INFO     | . get job = 0 s
[2025-11-26 06:34:22] 2025-11-26 14:33:48,030 | INFO     | . initial setup = 3 s
[2025-11-26 06:34:22] 2025-11-26 14:33:48,030 | INFO     | . payload setup = 13 s
[2025-11-26 06:34:22] 2025-11-26 14:33:48,030 | INFO     | . stage-in = 0 s
[2025-11-26 06:34:22] 2025-11-26 14:33:48,030 | INFO     | . payload execution = 118 s
[2025-11-26 06:34:22] 2025-11-26 14:33:48,030 | INFO     | . stage-out = 0 s
[2025-11-26 06:34:22] 2025-11-26 14:33:48,030 | INFO     | . log creation = 0 s
[2025-11-26 06:34:22] 2025-11-26 14:33:48,030 | INFO     | ..............................
[2025-11-26 06:34:22] 2025-11-26 14:33:48,030 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-26 06:34:22] 2025-11-26 14:33:48,030 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6897881367/pilotlog.txt
[2025-11-26 06:34:22] 2025-11-26 14:33:48,053 | WARNING  | 
[2025-11-26 06:34:22] [begin log extracts]
[2025-11-26 06:34:22] - Log from pilotlog.txt -
[2025-11-26 06:34:22] 2025-11-26 14:33:48,027 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6897881367/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 06:34:22] 2025-11-26 14:33:48,028 | INFO     | extracted standard info from prmon json
[2025-11-26 06:34:22] 2025-11-26 14:33:48,028 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 06:34:22] 2025-11-26 14:33:48,028 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 06:34:22] 2025-11-26 14:33:48,028 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-26 06:34:22] 2025-11-26 14:33:48,028 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-26 06:34:22] 2025-11-26 14:33:48,029 | WARNING  | wrong length of table data, x=[1764167394.0, 1764167455.0], y=[896.0, 391246.0] (must be same and length>=4)
[2025-11-26 06:34:22] 2025-11-26 14:33:48,029 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-11-26 06:34:22] 2025-11-26 14:33:48,029 | INFO     | ..............................
[2025-11-26 06:34:22] 2025-11-26 14:33:48,030 | INFO     | . Timing measurements:
[2025-11-26 06:34:22] 2025-11-26 14:33:48,030 | INFO     | . get job = 0 s
[2025-11-26 06:34:22] 2025-11-26 14:33:48,030 | INFO     | . initial setup = 3 s
[2025-11-26 06:34:22] 2025-11-26 14:33:48,030 | INFO     | . payload setup = 13 s
[2025-11-26 06:34:22] 2025-11-26 14:33:48,030 | INFO     | . stage-in = 0 s
[2025-11-26 06:34:22] 2025-11-26 14:33:48,030 | INFO     | . payload execution = 118 s
[2025-11-26 06:34:22] 2025-11-26 14:33:48,030 | INFO     | . stage-out = 0 s
[2025-11-26 06:34:22] 2025-11-26 14:33:48,030 | INFO     | . log creation = 0 s
[2025-11-26 06:34:22] 2025-11-26 14:33:48,030 | INFO     | ..............................
[2025-11-26 06:34:22] 2025-11-26 14:33:48,030 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-26 06:34:22] 2025-11-26 14:33:48,030 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6897881367/pilotlog.txt
[2025-11-26 06:34:22] [end log extracts]
[2025-11-26 06:34:22] 2025-11-26 14:33:48,053 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-26 06:34:22] 2025-11-26 14:33:48,054 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-26 06:34:22] 2025-11-26 14:33:48,123 | INFO     | 
[2025-11-26 06:34:22] 2025-11-26 14:33:48,124 | INFO     | job summary report
[2025-11-26 06:34:22] 2025-11-26 14:33:48,124 | INFO     | --------------------------------------------------
[2025-11-26 06:34:22] 2025-11-26 14:33:48,124 | INFO     | PanDA job id: 6897881367
[2025-11-26 06:34:22] 2025-11-26 14:33:48,124 | INFO     | task id: 47556173
[2025-11-26 06:34:22] 2025-11-26 14:33:48,125 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-26 06:31:32,587 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-26 06:34:22] 2025-11-26 14:33:48,125 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-26 06:34:22] 2025-11-26 14:33:48,125 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 06:34:22] 2025-11-26 14:33:48,125 | INFO     | pilot state: failed 
[2025-11-26 06:34:22] 2025-11-26 14:33:48,125 | INFO     | transexitcode: 65
[2025-11-26 06:34:22] 2025-11-26 14:33:48,125 | INFO     | exeerrorcode: 65
[2025-11-26 06:34:22] 2025-11-26 14:33:48,125 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-11-26 06:34:22] 2025-11-26 14:33:48,125 | INFO     | exitcode: 65
[2025-11-26 06:34:22] 2025-11-26 14:33:48,125 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-11-26 06:34:22] 2025-11-26 14:33:48,125 | INFO     | cpuconsumptiontime: 48 s
[2025-11-26 06:34:22] 2025-11-26 14:33:48,125 | INFO     | nevents: 0
[2025-11-26 06:34:22] 2025-11-26 14:33:48,125 | INFO     | neventsw: 0
[2025-11-26 06:34:22] 2025-11-26 14:33:48,125 | INFO     | pid: 1194525
[2025-11-26 06:34:22] 2025-11-26 14:33:48,125 | INFO     | pgrp: 1194525
[2025-11-26 06:34:22] 2025-11-26 14:33:48,126 | INFO     | corecount: 8
[2025-11-26 06:34:22] 2025-11-26 14:33:48,126 | INFO     | event service: False
[2025-11-26 06:34:22] 2025-11-26 14:33:48,126 | INFO     | sizes: {0: 2284255, 11: 2284545, 135: 2309930, 136: 2309906, 137: 2314280, 263: 2314418}
[2025-11-26 06:34:22] 2025-11-26 14:33:48,126 | INFO     | --------------------------------------------------
[2025-11-26 06:34:22] 2025-11-26 14:33:48,126 | INFO     | 
[2025-11-26 06:34:22] 2025-11-26 14:33:48,126 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-26 06:34:22] 2025-11-26 14:33:48,175 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 06:34:22] 2025-11-26 14:33:48,175 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 06:34:22] 2025-11-26 14:33:48,175 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 06:34:22] 2025-11-26 14:33:48,175 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 06:34:22] 2025-11-26 14:33:48,175 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 06:34:22] 2025-11-26 14:33:48,175 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 06:34:22] 2025-11-26 14:33:48,176 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 06:34:22] 2025-11-26 14:33:48,176 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 06:34:22] 2025-11-26 14:33:48,176 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 06:34:22] 2025-11-26 14:33:48,176 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 06:34:22] 2025-11-26 14:33:48,176 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 06:34:22] 2025-11-26 14:33:48,176 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 06:34:22] 2025-11-26 14:33:48,176 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 06:34:22] 2025-11-26 14:33:48,176 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 06:34:22] 2025-11-26 14:33:48,176 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 06:34:22] 2025-11-26 14:33:48,176 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 06:34:22] 2025-11-26 14:33:48,176 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 06:34:22] 2025-11-26 14:33:48,176 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 06:34:22] 2025-11-26 14:33:48,177 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 06:34:22] 2025-11-26 14:33:48,177 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 06:34:22] 2025-11-26 14:33:48,177 | INFO     | job 6897881367 has completed (purged errors)
[2025-11-26 06:34:22] 2025-11-26 14:33:48,177 | INFO     | overall cleanup function is called
[2025-11-26 06:34:22] 2025-11-26 14:33:49,185 | INFO     | --- collectZombieJob: --- 10, [1194525]
[2025-11-26 06:34:22] 2025-11-26 14:33:49,185 | INFO     | zombie collector waiting for pid 1194525
[2025-11-26 06:34:22] 2025-11-26 14:33:49,185 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 06:34:22] 2025-11-26 14:33:49,185 | INFO     | collected zombie processes
[2025-11-26 06:34:22] 2025-11-26 14:33:49,186 | INFO     | will attempt to kill all subprocesses of pid=1194525
[2025-11-26 06:34:22] 2025-11-26 14:33:49,619 | INFO     | process IDs to be killed: [1194525] (in reverse order)
[2025-11-26 06:34:22] 2025-11-26 14:33:49,677 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 06:34:22] 2025-11-26 14:33:49,678 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 06:34:22] 2025-11-26 14:33:49,685 | INFO     | did not find any defunct processes belonging to 1194525
[2025-11-26 06:34:22] 2025-11-26 14:33:49,693 | INFO     | did not find any defunct processes belonging to 1194525
[2025-11-26 06:34:22] 2025-11-26 14:33:49,694 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 06:34:22] 2025-11-26 14:33:49,694 | INFO     | ready for new job
[2025-11-26 06:34:22] 2025-11-26 14:33:49,694 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 06:34:22] 2025-11-26 14:33:49,695 | INFO     | ***************************************
[2025-11-26 06:34:22] 2025-11-26 14:33:49,695 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 06:34:22] 2025-11-26 14:33:49,695 | INFO     | ***************************************
[2025-11-26 06:34:22] 2025-11-26 14:33:49,695 | INFO     | 
[2025-11-26 06:34:22] 2025-11-26 14:33:49,697 | INFO     | architecture information:
[2025-11-26 06:34:22] 2025-11-26 14:33:49,697 | INFO     | executing command: cat /etc/os-release
[2025-11-26 06:34:22] 2025-11-26 14:33:49,716 | INFO     | cat /etc/os-release:
[2025-11-26 06:34:22] NAME="CentOS Linux"
[2025-11-26 06:34:22] VERSION="7 (Core)"
[2025-11-26 06:34:22] ID="centos"
[2025-11-26 06:34:22] ID_LIKE="rhel fedora"
[2025-11-26 06:34:22] VERSION_ID="7"
[2025-11-26 06:34:22] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 06:34:22] ANSI_COLOR="0;31"
[2025-11-26 06:34:22] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 06:34:22] HOME_URL="https://www.centos.org/"
[2025-11-26 06:34:22] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 06:34:22] 
[2025-11-26 06:34:22] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 06:34:22] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 06:34:22] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 06:34:22] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 06:34:22] 
[2025-11-26 06:34:22] 2025-11-26 14:33:49,716 | INFO     | ***************************************
[2025-11-26 06:34:22] 2025-11-26 14:33:50,226 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-26 06:34:22] 2025-11-26 14:33:50,294 | INFO     | sufficient remaining disk space (1213207674880 B)
[2025-11-26 06:34:22] 2025-11-26 14:33:50,294 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 06:34:22] 2025-11-26 14:33:50,294 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 06:34:22] 2025-11-26 14:33:50,294 | INFO     | update_server=False
[2025-11-26 06:34:22] 2025-11-26 14:33:50,294 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 06:34:22] 2025-11-26 14:33:50,295 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 06:34:22] 2025-11-26 14:33:50,295 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 06:34:22] 2025-11-26 14:33:50,317 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 06:34:22] 2025-11-26 14:33:50,317 | INFO     | aborting loop
[2025-11-26 06:34:22] 2025-11-26 14:33:50,417 | INFO     | all data control threads have been joined
[2025-11-26 06:34:22] 2025-11-26 14:33:50,438 | INFO     | all job control threads have been joined
[2025-11-26 06:34:22] 2025-11-26 14:33:50,924 | INFO     | all payload control threads have been joined
[2025-11-26 06:34:22] 2025-11-26 14:33:51,300 | INFO     | [job] retrieve thread has finished
[2025-11-26 06:34:22] 2025-11-26 14:33:51,328 | INFO     | [job] job monitor thread has finished
[2025-11-26 06:34:22] 2025-11-26 14:33:51,359 | INFO     | [payload] validate_post thread has finished
[2025-11-26 06:34:22] 2025-11-26 14:33:51,424 | INFO     | [data] control thread has finished
[2025-11-26 06:34:22] 2025-11-26 14:33:51,444 | INFO     | [job] control thread has finished
[2025-11-26 06:34:22] 2025-11-26 14:33:51,532 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 06:34:22] 2025-11-26 14:33:51,930 | INFO     | [payload] control thread has finished
[2025-11-26 06:34:22] 2025-11-26 14:33:52,015 | INFO     | [payload] failed_post thread has finished
[2025-11-26 06:34:22] 2025-11-26 14:33:52,127 | INFO     | [job] validate thread has finished
[2025-11-26 06:34:22] 2025-11-26 14:33:52,222 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 06:34:22] 2025-11-26 14:33:52,302 | INFO     | [data] copytool_out thread has finished
[2025-11-26 06:34:22] 2025-11-26 14:33:52,542 | INFO     | [data] copytool_in thread has finished
[2025-11-26 06:34:22] 2025-11-26 14:33:52,557 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 06:34:22] 2025-11-26 14:33:52,645 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 06:34:22] 2025-11-26 14:33:53,150 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 06:34:22] 2025-11-26 14:33:54,156 | INFO     | [job] queue monitor thread has finished
[2025-11-26 06:34:22] 2025-11-26 14:33:54,304 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 06:34:22] 2025-11-26 14:34:05,570 | INFO     | [monitor] cgroup control has ended
[2025-11-26 06:34:22] 2025-11-26 14:34:06,017 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139972928677696)>', '<ExcThread(monitor, started 139972531164928)>']
[2025-11-26 06:34:22] 2025-11-26 14:34:11,044 | INFO     | all workflow threads have been joined
[2025-11-26 06:34:22] 2025-11-26 14:34:11,044 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 06:34:22] 2025-11-26 14:34:11,045 | INFO     | traces error code: 0
[2025-11-26 06:34:22] 2025-11-26 14:34:11,045 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 06:34:22] 2025-11-26 14:34:20,168 | INFO     | PID=1187925 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 06:34:22] 2025-11-26 14:34:20,168 | INFO     | .. there are 19 such processes running
[2025-11-26 06:34:22] 2025-11-26 14:34:20,169 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 06:34:22] 2025-11-26 14:34:20,169 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 06:34:22] 2025-11-26 14:34:20,169 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 06:34:22] 2025-11-26 14:34:20,169 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 06:34:22] 2025-11-26 14:34:20,170 | INFO     | [monitor] control thread has ended
[2025-11-26 06:34:22] 2025-11-26 14:34:21,024 [wrapper] ==== pilot stdout END ====
[2025-11-26 06:34:22] 2025-11-26 14:34:21,068 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 06:34:22] 2025-11-26 14:34:21,096 [wrapper] pilotpid: 1187925
[2025-11-26 06:34:22] 2025-11-26 14:34:21,127 [wrapper] Pilot exit status: 0
[2025-11-26 06:34:22] 2025-11-26 14:34:21,355 [wrapper] pandaids: 6897881367
[2025-11-26 06:34:22] 2025-11-26 14:34:21,494 [wrapper] cleanup supervisor_pilot 1187931 1187926
[2025-11-26 06:34:22] 2025-11-26 14:34:21,497 [wrapper] Test setup, not cleaning
[2025-11-26 06:34:22] 2025-11-26 14:34:21,499 [wrapper] apfmon messages muted
[2025-11-26 06:34:22] 2025-11-26 14:34:21,501 [wrapper] ==== wrapper stdout END ====
[2025-11-26 06:34:22] 2025-11-26 14:34:21,503 [wrapper] ==== wrapper stderr END ====
[2025-11-26 06:34:22]  *** Error codes and diagnostics ***
[2025-11-26 06:34:22]     "exeErrorCode": 65,
[2025-11-26 06:34:22]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-11-26 06:34:22]     "pilotErrorCode": 1305,
[2025-11-26 06:34:22]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-11-26 06:34:22]  *** Listing of results directory ***
[2025-11-26 06:34:22] total 401888
[2025-11-26 06:34:22] -rw-r--r--. 1 boinc boinc    576529 Nov 25 17:44 pilot3.tar.gz
[2025-11-26 06:34:22] -rwx------. 1 boinc boinc     36292 Nov 25 18:07 runpilot2-wrapper.sh
[2025-11-26 06:34:22] -rw-r--r--. 1 boinc boinc      5112 Nov 25 18:07 queuedata.json
[2025-11-26 06:34:22] -rw-r--r--. 1 boinc boinc       100 Nov 26 06:28 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 06:34:22] -rwxr-xr-x. 1 boinc boinc      7986 Nov 26 06:28 run_atlas
[2025-11-26 06:34:22] -rw-r--r--. 1 boinc boinc       105 Nov 26 06:28 job.xml
[2025-11-26 06:34:22] -rw-r--r--. 1 boinc boinc      6445 Nov 26 06:28 init_data.xml
[2025-11-26 06:34:22] -rw-r--r--. 2 boinc boinc 407317833 Nov 26 06:28 EVNT.47483658._003147.pool.root.1
[2025-11-26 06:34:22] -rw-r--r--. 2 boinc boinc    590102 Nov 26 06:28 input.tar.gz
[2025-11-26 06:34:22] -rw-r--r--. 2 boinc boinc     15847 Nov 26 06:28 start_atlas.sh
[2025-11-26 06:34:22] drwxrwx--x. 2 boinc boinc      4096 Nov 26 06:28 shared
[2025-11-26 06:34:22] -rw-r--r--. 1 boinc boinc         0 Nov 26 06:28 boinc_lockfile
[2025-11-26 06:34:22] -rw-r--r--. 1 boinc boinc      2782 Nov 26 06:28 pandaJob.out
[2025-11-26 06:34:22] -rw-------. 1 boinc boinc    992360 Nov 26 06:29 agis_schedconf.cvmfs.json
[2025-11-26 06:34:22] -rw-------. 1 boinc boinc   1516240 Nov 26 06:29 agis_ddmendpoints.agis.ALL.json
[2025-11-26 06:34:22] drwx------. 5 boinc boinc      4096 Nov 26 06:29 pilot3
[2025-11-26 06:34:22] -rw-r--r--. 1 boinc boinc       524 Nov 26 06:30 boinc_task_state.xml
[2025-11-26 06:34:22] -rw-------. 1 boinc boinc       987 Nov 26 06:31 memory_monitor_summary.json
[2025-11-26 06:34:22] -rw-------. 1 boinc boinc     49220 Nov 26 06:31 log.47556173._001031.job.log.tgz.1
[2025-11-26 06:34:22] -rw-------. 1 boinc boinc     10330 Nov 26 06:33 heartbeat.json
[2025-11-26 06:34:22] -rw-r--r--. 1 boinc boinc        23 Nov 26 06:34 wrapper_checkpoint.txt
[2025-11-26 06:34:22] -rw-------. 1 boinc boinc       823 Nov 26 06:34 pilotlog.txt
[2025-11-26 06:34:22] -rw-------. 1 boinc boinc        95 Nov 26 06:34 pilot_heartbeat.json
[2025-11-26 06:34:22] -rw-------. 1 boinc boinc    102318 Nov 26 06:34 log.47556173._001031.job.log.1
[2025-11-26 06:34:22] -rw-------. 1 boinc boinc       186 Nov 26 06:34 output.list
[2025-11-26 06:34:22] -rw-r--r--. 1 boinc boinc       620 Nov 26 06:34 runtime_log
[2025-11-26 06:34:22] -rw-------. 1 boinc boinc    174080 Nov 26 06:34 result.tar.gz
[2025-11-26 06:34:22] -rw-r--r--. 1 boinc boinc      8634 Nov 26 06:34 runtime_log.err
[2025-11-26 06:34:22] -rw-------. 1 boinc boinc       647 Nov 26 06:34 Q7zKDmB7Ji8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm7hMKDm3B8ySm.diag
[2025-11-26 06:34:22] -rw-r--r--. 1 boinc boinc      8192 Nov 26 06:34 boinc_mmap_file
[2025-11-26 06:34:22] -rw-r--r--. 1 boinc boinc     22453 Nov 26 06:34 stderr.txt
[2025-11-26 06:34:22] No HITS result produced
[2025-11-26 06:34:22]  *** Contents of shared directory: ***
[2025-11-26 06:34:22] total 398544
[2025-11-26 06:34:22] -rw-r--r--. 2 boinc boinc 407317833 Nov 26 06:28 ATLAS.root_0
[2025-11-26 06:34:22] -rw-r--r--. 2 boinc boinc    590102 Nov 26 06:28 input.tar.gz
[2025-11-26 06:34:22] -rw-r--r--. 2 boinc boinc     15847 Nov 26 06:28 start_atlas.sh
[2025-11-26 06:34:22] -rw-------. 1 boinc boinc    174080 Nov 26 06:34 result.tar.gz
06:34:23 (1184271): run_atlas exited; CPU time 51.471492
06:34:23 (1184271): called boinc_finish(0)

</stderr_txt>
]]>

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