Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
09:13:53 (1270369): wrapper (7.7.26015): starting
09:13:53 (1270369): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 09:13:53] Arguments: --nthreads 8
[2025-11-26 09:13:53] Threads: 8
[2025-11-26 09:13:53] Checking for CVMFS
[2025-11-26 09:13:53] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 09:13:54] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 09:13:54] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 09:13:54] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 09:13:54] 2.13.3.0 12460 30155 348160 153323 3 694 31181261 32935936 62169 16776704 0 302728784 99.638 283538074 37332 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 09:13:54] CVMFS is ok
[2025-11-26 09:13:54] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 09:13:54] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 09:13:54] Further information can be found at the LHC@home message board.
[2025-11-26 09:13:54] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 09:13:54] Checking for apptainer binary...
[2025-11-26 09:13:54] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 09:13:54] Running /usr/bin/apptainer --version
[2025-11-26 09:13:54] apptainer version 1.4.4-1.el9
[2025-11-26 09:13:54] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 09:13:54] c7-6-31.aglt2.org
[2025-11-26 09:13:54] apptainer works
[2025-11-26 09:13:54] Set ATHENA_PROC_NUMBER=8
[2025-11-26 09:13:54] Set ATHENA_CORE_NUMBER=8
[2025-11-26 09:13:54] Starting ATLAS job with PandaID=6897881101
[2025-11-26 09:13:54] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
23:21:23 (1633918): wrapper (7.7.26015): starting
23:21:23 (1633918): wrapper: running run_atlas (--nthreads 11)
[2025-11-26 23:21:23] Arguments: --nthreads 11
[2025-11-26 23:21:23] Threads: 11
[2025-11-26 23:21:23] This job has been restarted, cleaning up previous attempt
[2025-11-26 23:21:23] Checking for CVMFS
[2025-11-26 23:21:23] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 23:21:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 23:21:23] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 23:21:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 23:21:23] 2.13.3.0 12460 31002 334584 153347 2 386 26515591 32935936 54681 16776704 0 323441975 99.643 298805760 36890 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 23:21:23] CVMFS is ok
[2025-11-26 23:21:23] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 23:21:23] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 23:21:23] Further information can be found at the LHC@home message board.
[2025-11-26 23:21:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 23:21:23] Checking for apptainer binary...
[2025-11-26 23:21:23] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 23:21:23] Running /usr/bin/apptainer --version
[2025-11-26 23:21:23] apptainer version 1.4.4-1.el9
[2025-11-26 23:21:23] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 23:21:23] c7-6-31.aglt2.org
[2025-11-26 23:21:23] apptainer works
[2025-11-26 23:21:23] Set ATHENA_PROC_NUMBER=11
[2025-11-26 23:21:23] Set ATHENA_CORE_NUMBER=11
[2025-11-26 23:21:23] Starting ATLAS job with PandaID=6897881101
[2025-11-26 23:21:23] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 18:26:49]  *** The last 200 lines of the pilot log: ***
[2025-11-27 18:26:49] 2025-11-27 23:25:43,317 | INFO     | 68650s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-27 18:26:49] 2025-11-27 23:25:43,809 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 18:26:49] 2025-11-27 23:25:43,829 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3300.0337083333325
[2025-11-27 18:26:49] 2025-11-27 23:25:43,880 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6897881101/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 18:26:49] 2025-11-27 23:25:43,880 | INFO     | extracted standard info from prmon json
[2025-11-27 18:26:49] 2025-11-27 23:25:43,881 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 18:26:49] 2025-11-27 23:25:43,881 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 18:26:49] 2025-11-27 23:25:43,934 | INFO     | fitting pss+swap vs Time
[2025-11-27 18:26:49] 2025-11-27 23:25:43,935 | INFO     | sum of square deviations: 441487047455.552
[2025-11-27 18:26:49] 2025-11-27 23:25:44,016 | INFO     | sum of deviations: 2627048497905.9956
[2025-11-27 18:26:49] 2025-11-27 23:25:44,016 | INFO     | mean x: 1764251606.4426668
[2025-11-27 18:26:49] 2025-11-27 23:25:44,016 | INFO     | mean y: 3444859.441777778
[2025-11-27 18:26:49] 2025-11-27 23:25:44,016 | INFO     | intersect: -10494653690.323868
[2025-11-27 18:26:49] 2025-11-27 23:25:44,017 | INFO     | chi2: 6.724008808554975
[2025-11-27 18:26:49] 2025-11-27 23:25:44,022 | INFO     | sum of square deviations: 435626930250.09827
[2025-11-27 18:26:49] 2025-11-27 23:25:44,101 | INFO     | sum of deviations: 3103252552701.9253
[2025-11-27 18:26:49] 2025-11-27 23:25:44,101 | INFO     | mean x: 1764251453.9491072
[2025-11-27 18:26:49] 2025-11-27 23:25:44,101 | INFO     | mean y: 3457253.525
[2025-11-27 18:26:49] 2025-11-27 23:25:44,101 | INFO     | intersect: -12564447639.160213
[2025-11-27 18:26:49] 2025-11-27 23:25:44,102 | INFO     | chi2: 3.2991183790255927
[2025-11-27 18:26:49] 2025-11-27 23:25:44,103 | INFO     | current chi2=3.2991183790255927 (change=50.93524602721943 %)
[2025-11-27 18:26:49] 2025-11-27 23:25:44,110 | INFO     | sum of square deviations: 429818907044.5525
[2025-11-27 18:26:49] 2025-11-27 23:25:44,182 | INFO     | sum of deviations: 3311762032779.2314
[2025-11-27 18:26:49] 2025-11-27 23:25:44,183 | INFO     | mean x: 1764251301.4556053
[2025-11-27 18:26:49] 2025-11-27 23:25:44,183 | INFO     | mean y: 3462724.883408072
[2025-11-27 18:26:49] 2025-11-27 23:25:44,183 | INFO     | intersect: -13590123738.348633
[2025-11-27 18:26:49] 2025-11-27 23:25:44,184 | INFO     | chi2: 2.477514241785202
[2025-11-27 18:26:49] 2025-11-27 23:25:44,184 | INFO     | current chi2=2.477514241785202 (change=24.90374830026726 %)
[2025-11-27 18:26:49] 2025-11-27 23:25:44,184 | INFO     | right removable region: 1114
[2025-11-27 18:26:49] 2025-11-27 23:25:44,194 | INFO     | sum of square deviations: 435626077107.8915
[2025-11-27 18:26:49] 2025-11-27 23:25:44,264 | INFO     | sum of deviations: 2286239876692.0845
[2025-11-27 18:26:49] 2025-11-27 23:25:44,264 | INFO     | mean x: 1764251758.9473214
[2025-11-27 18:26:49] 2025-11-27 23:25:44,264 | INFO     | mean y: 3453716.560714286
[2025-11-27 18:26:49] 2025-11-27 23:25:44,264 | INFO     | intersect: -9255640115.947708
[2025-11-27 18:26:49] 2025-11-27 23:25:44,272 | INFO     | chi2: 4.765123593155846
[2025-11-27 18:26:49] 2025-11-27 23:25:44,272 | INFO     | current chi2=4.765123593155846 (change=29.13269853107322 %)
[2025-11-27 18:26:49] 2025-11-27 23:25:44,273 | INFO     | sum of square deviations: 429817474167.7849
[2025-11-27 18:26:49] 2025-11-27 23:25:44,352 | INFO     | sum of deviations: 2158220661751.2388
[2025-11-27 18:26:49] 2025-11-27 23:25:44,352 | INFO     | mean x: 1764251911.4484305
[2025-11-27 18:26:49] 2025-11-27 23:25:44,352 | INFO     | mean y: 3457076.795515695
[2025-11-27 18:26:49] 2025-11-27 23:25:44,352 | INFO     | intersect: -8855291477.33087
[2025-11-27 18:26:49] 2025-11-27 23:25:44,353 | INFO     | chi2: 4.621546916651833
[2025-11-27 18:26:49] 2025-11-27 23:25:44,353 | INFO     | current chi2=4.621546916651833 (change=3.013073505800197 %)
[2025-11-27 18:26:49] 2025-11-27 23:25:44,354 | INFO     | left removable region: 20
[2025-11-27 18:26:49] 2025-11-27 23:25:44,354 | INFO     | sum of square deviations: 405986087624.81555
[2025-11-27 18:26:49] 2025-11-27 23:25:44,387 | INFO     | monitor loop #3241: job 0:6897881101 is in state 'finished'
[2025-11-27 18:26:49] 2025-11-27 23:25:44,387 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 18:26:49] 2025-11-27 23:25:44,416 | INFO     | sum of deviations: 2677472454327.423
[2025-11-27 18:26:49] 2025-11-27 23:25:44,416 | INFO     | mean x: 1764251880.9670932
[2025-11-27 18:26:49] 2025-11-27 23:25:44,416 | INFO     | mean y: 3480937.3729433273
[2025-11-27 18:26:49] 2025-11-27 23:25:44,416 | INFO     | intersect: -11631735041.136368
[2025-11-27 18:26:49] 2025-11-27 23:25:44,417 | INFO     | chi2: 0.18879784785573236
[2025-11-27 18:26:49] 2025-11-27 23:25:44,418 | INFO     | current memory leak: 6.59 B/s (using 1094 data points, chi2=0.19)
[2025-11-27 18:26:49] 2025-11-27 23:25:44,419 | INFO     | could have reported an average CPU frequency of 3391 MHz (41 samples)
[2025-11-27 18:26:49] 2025-11-27 23:25:44,419 | INFO     | ..............................
[2025-11-27 18:26:49] 2025-11-27 23:25:44,419 | INFO     | . Timing measurements:
[2025-11-27 18:26:49] 2025-11-27 23:25:44,419 | INFO     | . get job = 0 s
[2025-11-27 18:26:49] 2025-11-27 23:25:44,419 | INFO     | . initial setup = 2 s
[2025-11-27 18:26:49] 2025-11-27 23:25:44,423 | INFO     | . payload setup = 6 s
[2025-11-27 18:26:49] 2025-11-27 23:25:44,423 | INFO     | . stage-in = 0 s
[2025-11-27 18:26:49] 2025-11-27 23:25:44,423 | INFO     | . payload execution = 68604 s
[2025-11-27 18:26:49] 2025-11-27 23:25:44,423 | INFO     | . stage-out = 8 s
[2025-11-27 18:26:49] 2025-11-27 23:25:44,423 | INFO     | . log creation = 2 s
[2025-11-27 18:26:49] 2025-11-27 23:25:44,423 | INFO     | ..............................
[2025-11-27 18:26:49] 2025-11-27 23:25:44,936 | INFO     | 
[2025-11-27 18:26:49] 2025-11-27 23:25:44,936 | INFO     | job summary report
[2025-11-27 18:26:49] 2025-11-27 23:25:44,936 | INFO     | --------------------------------------------------
[2025-11-27 18:26:49] 2025-11-27 23:25:44,937 | INFO     | PanDA job id: 6897881101
[2025-11-27 18:26:49] 2025-11-27 23:25:44,937 | INFO     | task id: 47556161
[2025-11-27 18:26:49] 2025-11-27 23:25:44,937 | INFO     | errors: (none)
[2025-11-27 18:26:49] 2025-11-27 23:25:44,937 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 18:26:49] 2025-11-27 23:25:44,937 | INFO     | pilot state: finished 
[2025-11-27 18:26:49] 2025-11-27 23:25:44,937 | INFO     | transexitcode: 0
[2025-11-27 18:26:49] 2025-11-27 23:25:44,937 | INFO     | exeerrorcode: 0
[2025-11-27 18:26:49] 2025-11-27 23:25:44,937 | INFO     | exeerrordiag: 
[2025-11-27 18:26:49] 2025-11-27 23:25:44,937 | INFO     | exitcode: 0
[2025-11-27 18:26:49] 2025-11-27 23:25:44,937 | INFO     | exitmsg: OK
[2025-11-27 18:26:49] 2025-11-27 23:25:44,937 | INFO     | cpuconsumptiontime: 184130 s
[2025-11-27 18:26:49] 2025-11-27 23:25:44,937 | INFO     | nevents: 1000
[2025-11-27 18:26:49] 2025-11-27 23:25:44,938 | INFO     | neventsw: 0
[2025-11-27 18:26:49] 2025-11-27 23:25:44,938 | INFO     | pid: 1710125
[2025-11-27 18:26:49] 2025-11-27 23:25:44,938 | INFO     | pgrp: 1710125
[2025-11-27 18:26:49] 2025-11-27 23:25:44,938 | INFO     | corecount: 11
[2025-11-27 18:26:49] 2025-11-27 23:25:44,938 | INFO     | event service: False
[2025-11-27 18:26:49] 2025-11-27 23:25:44,938 | INFO     | sizes: {0: 2284213, 5: 2284475, 11: 2284531, 68614: 2338281, 68615: 2338280, 68624: 2347330, 68625: 2347514, 68634: 2347856}
[2025-11-27 18:26:49] 2025-11-27 23:25:44,942 | INFO     | --------------------------------------------------
[2025-11-27 18:26:49] 2025-11-27 23:25:44,942 | INFO     | 
[2025-11-27 18:26:49] 2025-11-27 23:25:44,942 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-11-27 18:26:49] 2025-11-27 23:25:44,984 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 18:26:49] 2025-11-27 23:25:44,984 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 18:26:49] 2025-11-27 23:25:44,984 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 18:26:49] 2025-11-27 23:25:44,984 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 18:26:49] 2025-11-27 23:25:44,984 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 18:26:49] 2025-11-27 23:25:44,985 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 18:26:49] 2025-11-27 23:25:44,985 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 18:26:49] 2025-11-27 23:25:44,985 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 18:26:49] 2025-11-27 23:25:44,985 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 18:26:49] 2025-11-27 23:25:44,985 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 18:26:49] 2025-11-27 23:25:44,985 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 18:26:49] 2025-11-27 23:25:44,985 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 18:26:49] 2025-11-27 23:25:44,985 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 18:26:49] 2025-11-27 23:25:44,985 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 18:26:49] 2025-11-27 23:25:44,985 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 18:26:49] 2025-11-27 23:25:44,985 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 18:26:49] 2025-11-27 23:25:44,985 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 18:26:49] 2025-11-27 23:25:44,985 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 18:26:49] 2025-11-27 23:25:44,985 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 18:26:49] 2025-11-27 23:25:44,986 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 18:26:49] 2025-11-27 23:25:44,986 | INFO     | job 6897881101 has completed (purged errors)
[2025-11-27 18:26:49] 2025-11-27 23:25:44,986 | INFO     | overall cleanup function is called
[2025-11-27 18:26:49] 2025-11-27 23:25:46,004 | INFO     | --- collectZombieJob: --- 10, [1710125]
[2025-11-27 18:26:49] 2025-11-27 23:25:46,018 | INFO     | zombie collector waiting for pid 1710125
[2025-11-27 18:26:49] 2025-11-27 23:25:46,018 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 18:26:49] 2025-11-27 23:25:46,018 | INFO     | collected zombie processes
[2025-11-27 18:26:49] 2025-11-27 23:25:46,018 | INFO     | will attempt to kill all subprocesses of pid=1710125
[2025-11-27 18:26:49] 2025-11-27 23:25:47,532 | INFO     | process IDs to be killed: [1710125] (in reverse order)
[2025-11-27 18:26:49] 2025-11-27 23:25:47,755 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 18:26:49] 2025-11-27 23:25:47,755 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 18:26:49] 2025-11-27 23:25:47,834 | INFO     | did not find any defunct processes belonging to 1710125
[2025-11-27 18:26:49] 2025-11-27 23:25:47,901 | INFO     | did not find any defunct processes belonging to 1710125
[2025-11-27 18:26:49] 2025-11-27 23:25:47,906 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 18:26:49] 2025-11-27 23:25:47,906 | INFO     | ready for new job
[2025-11-27 18:26:49] 2025-11-27 23:25:47,906 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 18:26:49] 2025-11-27 23:25:47,911 | INFO     | ***************************************
[2025-11-27 18:26:49] 2025-11-27 23:25:47,911 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 18:26:49] 2025-11-27 23:25:47,911 | INFO     | ***************************************
[2025-11-27 18:26:49] 2025-11-27 23:25:47,911 | INFO     | 
[2025-11-27 18:26:49] 2025-11-27 23:25:47,916 | INFO     | architecture information:
[2025-11-27 18:26:49] 2025-11-27 23:25:47,917 | INFO     | executing command: cat /etc/os-release
[2025-11-27 18:26:49] 2025-11-27 23:25:47,937 | INFO     | cat /etc/os-release:
[2025-11-27 18:26:49] NAME="CentOS Linux"
[2025-11-27 18:26:49] VERSION="7 (Core)"
[2025-11-27 18:26:49] ID="centos"
[2025-11-27 18:26:49] ID_LIKE="rhel fedora"
[2025-11-27 18:26:49] VERSION_ID="7"
[2025-11-27 18:26:49] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 18:26:49] ANSI_COLOR="0;31"
[2025-11-27 18:26:49] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 18:26:49] HOME_URL="https://www.centos.org/"
[2025-11-27 18:26:49] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 18:26:49] 
[2025-11-27 18:26:49] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 18:26:49] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 18:26:49] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 18:26:49] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 18:26:49] 
[2025-11-27 18:26:49] 2025-11-27 23:25:47,938 | INFO     | ***************************************
[2025-11-27 18:26:49] 2025-11-27 23:25:48,442 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-11-27 18:26:49] 2025-11-27 23:25:48,524 | INFO     | sufficient remaining disk space (68016930816 B)
[2025-11-27 18:26:49] 2025-11-27 23:25:48,525 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 18:26:49] 2025-11-27 23:25:48,525 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 18:26:49] 2025-11-27 23:25:48,525 | INFO     | update_server=False
[2025-11-27 18:26:49] 2025-11-27 23:25:48,525 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 18:26:49] 2025-11-27 23:25:48,525 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 18:26:49] 2025-11-27 23:25:48,526 | INFO     | aborting loop
[2025-11-27 18:26:49] 2025-11-27 23:25:48,526 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 18:26:49] 2025-11-27 23:25:48,576 | INFO     | all job control threads have been joined
[2025-11-27 18:26:49] 2025-11-27 23:25:48,749 | INFO     | all data control threads have been joined
[2025-11-27 18:26:49] 2025-11-27 23:25:48,781 | INFO     | all payload control threads have been joined
[2025-11-27 18:26:49] 2025-11-27 23:25:49,531 | INFO     | [job] retrieve thread has finished
[2025-11-27 18:26:49] 2025-11-27 23:25:49,532 | INFO     | [job] job monitor thread has finished
[2025-11-27 18:26:49] 2025-11-27 23:25:49,582 | INFO     | [job] control thread has finished
[2025-11-27 18:26:49] 2025-11-27 23:25:49,605 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 18:26:49] 2025-11-27 23:25:49,755 | INFO     | [data] control thread has finished
[2025-11-27 18:26:49] 2025-11-27 23:25:49,787 | INFO     | [payload] control thread has finished
[2025-11-27 18:26:49] 2025-11-27 23:25:49,849 | INFO     | [payload] failed_post thread has finished
[2025-11-27 18:26:49] 2025-11-27 23:25:50,006 | INFO     | [payload] validate_post thread has finished
[2025-11-27 18:26:49] 2025-11-27 23:25:50,355 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 18:26:49] 2025-11-27 23:25:50,356 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 18:26:49] 2025-11-27 23:25:50,359 | INFO     | [data] copytool_in thread has finished
[2025-11-27 18:26:49] 2025-11-27 23:25:50,381 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 18:26:49] 2025-11-27 23:25:50,532 | INFO     | [data] copytool_out thread has finished
[2025-11-27 18:26:49] 2025-11-27 23:25:50,632 | INFO     | [job] queue monitor thread has finished
[2025-11-27 18:26:49] 2025-11-27 23:25:50,856 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 18:26:49] 2025-11-27 23:25:50,857 | INFO     | [job] validate thread has finished
[2025-11-27 18:26:49] 2025-11-27 23:25:51,325 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 18:26:49] 2025-11-27 23:25:55,357 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 18:26:49] 2025-11-27 23:26:17,962 | INFO     | PID=1656873 has CPU usage=7.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 18:26:49] 2025-11-27 23:26:17,962 | INFO     | .. there are 86 such processes running
[2025-11-27 18:26:49] 2025-11-27 23:26:17,963 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 18:26:49] 2025-11-27 23:26:17,963 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 18:26:49] 2025-11-27 23:26:17,963 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 18:26:49] 2025-11-27 23:26:42,504 | INFO     | [monitor] cgroup control has ended
[2025-11-27 18:26:49] 2025-11-27 23:26:43,238 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140675460007744)>', '<ExcThread(monitor, started 140674959644416)>']
[2025-11-27 18:26:49] 2025-11-27 23:26:44,125 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 18:26:49] 2025-11-27 23:26:44,125 | INFO     | [monitor] control thread has ended
[2025-11-27 18:26:49] 2025-11-27 23:26:48,263 | INFO     | all workflow threads have been joined
[2025-11-27 18:26:49] 2025-11-27 23:26:48,263 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 18:26:49] 2025-11-27 23:26:48,264 | INFO     | traces error code: 0
[2025-11-27 18:26:49] 2025-11-27 23:26:48,264 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 18:26:49] 2025-11-27 23:26:48,871 [wrapper] ==== pilot stdout END ====
[2025-11-27 18:26:49] 2025-11-27 23:26:48,904 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 18:26:49] 2025-11-27 23:26:48,907 [wrapper] pilotpid: 1656873
[2025-11-27 18:26:49] 2025-11-27 23:26:48,910 [wrapper] Pilot exit status: 0
[2025-11-27 18:26:49] 2025-11-27 23:26:48,977 [wrapper] pandaids: 6897881101 6897881101
[2025-11-27 18:26:49] 2025-11-27 23:26:49,181 [wrapper] cleanup supervisor_pilot 4075890 1656876
[2025-11-27 18:26:49] 2025-11-27 23:26:49,203 [wrapper] Test setup, not cleaning
[2025-11-27 18:26:49] 2025-11-27 23:26:49,233 [wrapper] apfmon messages muted
[2025-11-27 18:26:49] 2025-11-27 23:26:49,238 [wrapper] ==== wrapper stdout END ====
[2025-11-27 18:26:49] 2025-11-27 23:26:49,252 [wrapper] ==== wrapper stderr END ====
[2025-11-27 18:26:49]  *** Error codes and diagnostics ***
[2025-11-27 18:26:49]     "exeErrorCode": 0,
[2025-11-27 18:26:49]     "exeErrorDiag": "",
[2025-11-27 18:26:49]     "pilotErrorCode": 0,
[2025-11-27 18:26:49]     "pilotErrorDiag": "",
[2025-11-27 18:26:49]  *** Listing of results directory ***
[2025-11-27 18:26:49] total 1720972
[2025-11-27 18:26:49] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-27 18:26:49] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 20:44 pilot3.tar.gz
[2025-11-27 18:26:49] -rwx------. 1 boincer umatlas     36292 Nov 25 21:00 runpilot2-wrapper.sh
[2025-11-27 18:26:49] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 21:00 queuedata.json
[2025-11-27 18:26:49] -rw-r--r--. 1 boincer umatlas       100 Nov 26 09:13 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 18:26:49] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 09:13 run_atlas
[2025-11-27 18:26:49] -rw-r--r--. 1 boincer umatlas       105 Nov 26 09:13 job.xml
[2025-11-27 18:26:49] -rw-r--r--. 3 boincer umatlas 407646508 Nov 26 09:13 EVNT.47483658._002360.pool.root.1
[2025-11-27 18:26:49] -rw-r--r--. 3 boincer umatlas 407646508 Nov 26 09:13 ATLAS.root_0
[2025-11-27 18:26:49] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 09:13 start_atlas.sh
[2025-11-27 18:26:49] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 09:13 shared
[2025-11-27 18:26:49] -rw-r--r--. 2 boincer umatlas    590107 Nov 26 09:13 input.tar.gz
[2025-11-27 18:26:49] -rw-r--r--. 1 boincer umatlas         0 Nov 26 09:13 boinc_lockfile
[2025-11-27 18:26:49] -rw-r--r--. 1 boincer umatlas      2784 Nov 26 23:21 pandaJob.out
[2025-11-27 18:26:49] -rw-------. 1 boincer umatlas        57 Nov 26 23:21 setup.sh.local
[2025-11-27 18:26:49] -rw-------. 1 boincer umatlas    991570 Nov 26 23:21 agis_schedconf.cvmfs.json
[2025-11-27 18:26:49] -rw-r--r--. 1 boincer umatlas       534 Nov 27 18:12 boinc_task_state.xml
[2025-11-27 18:26:49] -rw-r--r--. 1 boincer umatlas      6947 Nov 27 18:20 init_data.xml
[2025-11-27 18:26:49] -rw-------. 1 boincer umatlas 923206255 Nov 27 18:24 HITS.47556161._003425.pool.root.1
[2025-11-27 18:26:49] -rw-------. 1 boincer umatlas      1069 Nov 27 18:25 memory_monitor_summary.json
[2025-11-27 18:26:49] -rw-------. 1 boincer umatlas   1516240 Nov 27 18:25 agis_ddmendpoints.agis.ALL.json
[2025-11-27 18:26:49] -rw-------. 1 boincer umatlas   2403586 Nov 27 18:25 log.47556161._003425.job.log.tgz.1
[2025-11-27 18:26:49] -rw-------. 1 boincer umatlas      7933 Nov 27 18:25 heartbeat.json
[2025-11-27 18:26:49] -rw-------. 1 boincer umatlas        96 Nov 27 18:26 pilot_heartbeat.json
[2025-11-27 18:26:49] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 18:26 boinc_mmap_file
[2025-11-27 18:26:49] -rw-r--r--. 1 boincer umatlas        30 Nov 27 18:26 wrapper_checkpoint.txt
[2025-11-27 18:26:49] -rw-------. 1 boincer umatlas      4824 Nov 27 18:26 pilotlog.txt
[2025-11-27 18:26:49] -rw-------. 1 boincer umatlas   7519523 Nov 27 18:26 log.47556161._003425.job.log.1
[2025-11-27 18:26:49] -rw-------. 1 boincer umatlas       353 Nov 27 18:26 output.list
[2025-11-27 18:26:49] -rw-r--r--. 1 boincer umatlas       620 Nov 27 18:26 runtime_log
[2025-11-27 18:26:49] -rw-------. 1 boincer umatlas   9943040 Nov 27 18:26 result.tar.gz
[2025-11-27 18:26:49] -rw-r--r--. 1 boincer umatlas      9425 Nov 27 18:26 runtime_log.err
[2025-11-27 18:26:49] -rw-------. 1 boincer umatlas       789 Nov 27 18:26 7TbLDm70Ji8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm5gMKDmttoRFo.diag
[2025-11-27 18:26:49] -rw-r--r--. 1 boincer umatlas     23529 Nov 27 18:26 stderr.txt
[2025-11-27 18:26:49] HITS file was successfully produced:
[2025-11-27 18:26:49] -rw-------. 1 boincer umatlas 923206255 Nov 27 18:24 shared/HITS.pool.root.1
[2025-11-27 18:26:49]  *** Contents of shared directory: ***
[2025-11-27 18:26:49] total 1309984
[2025-11-27 18:26:49] -rw-r--r--. 3 boincer umatlas 407646508 Nov 26 09:13 ATLAS.root_0
[2025-11-27 18:26:49] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 09:13 start_atlas.sh
[2025-11-27 18:26:49] -rw-r--r--. 2 boincer umatlas    590107 Nov 26 09:13 input.tar.gz
[2025-11-27 18:26:49] -rw-------. 1 boincer umatlas 923206255 Nov 27 18:24 HITS.pool.root.1
[2025-11-27 18:26:49] -rw-------. 1 boincer umatlas   9943040 Nov 27 18:26 result.tar.gz
18:26:51 (1633918): run_atlas exited; CPU time 188200.852374
18:26:51 (1633918): called boinc_finish(0)

</stderr_txt>
]]>

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