Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
15:18:27 (3978891): wrapper (7.7.26015): starting
15:18:27 (3978891): wrapper: running run_atlas (--nthreads 3)
[2025-11-26 15:18:27] Arguments: --nthreads 3
[2025-11-26 15:18:27] Threads: 3
[2025-11-26 15:18:27] Checking for CVMFS
[2025-11-26 15:18:27] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 15:18:27] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 15:18:27] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 15:18:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 15:18:28] 2.9.2.0 2184780 888 72544 153324 0 85 35671265 36864001 0 130560 0 5333149 99.999 30329 27447 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-26 15:18:28] CVMFS is ok
[2025-11-26 15:18:28] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 15:18:28] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 15:18:28] Further information can be found at the LHC@home message board.
[2025-11-26 15:18:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 15:18:28] Checking for apptainer binary...
[2025-11-26 15:18:28] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 15:18:28] Running /usr/bin/apptainer --version
[2025-11-26 15:18:28] apptainer version 1.4.1-1.1
[2025-11-26 15:18:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 15:18:28] thA335
[2025-11-26 15:18:28] apptainer works
[2025-11-26 15:18:28] Set ATHENA_PROC_NUMBER=3
[2025-11-26 15:18:28] Set ATHENA_CORE_NUMBER=3
[2025-11-26 15:18:28] Starting ATLAS job with PandaID=6897372847
[2025-11-26 15:18:28] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 15:22:45]  *** The last 200 lines of the pilot log: ***
[2025-11-26 15:22:45] 2025-11-26 14:21:55,215 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-26 15:22:45] 2025-11-26 14:21:55,229 | INFO     | sufficient remaining disk space (825931857920 B)
[2025-11-26 15:22:45] 2025-11-26 14:21:55,229 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 15:22:45] 2025-11-26 14:21:55,229 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 15:22:45] 2025-11-26 14:21:55,229 | INFO     | update_server=False
[2025-11-26 15:22:45] 2025-11-26 14:21:55,229 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 15:22:45] 2025-11-26 14:21:55,229 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 15:22:45] 2025-11-26 14:21:55,642 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 15:22:45] 2025-11-26 14:21:55,642 | INFO     | aborting loop
[2025-11-26 15:22:45] 2025-11-26 14:21:55,723 | INFO     | all job control threads have been joined
[2025-11-26 15:22:45] 2025-11-26 14:21:55,978 | INFO     | all data control threads have been joined
[2025-11-26 15:22:45] 2025-11-26 14:21:56,235 | INFO     | [job] retrieve thread has finished
[2025-11-26 15:22:45] 2025-11-26 14:21:56,280 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 15:22:45] 2025-11-26 14:21:56,327 | INFO     | [payload] failed_post thread has finished
[2025-11-26 15:22:45] 2025-11-26 14:21:56,454 | INFO     | [data] copytool_in thread has finished
[2025-11-26 15:22:45] 2025-11-26 14:21:56,506 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 15:22:45] 2025-11-26 14:21:56,648 | INFO     | [job] job monitor thread has finished
[2025-11-26 15:22:45] 2025-11-26 14:21:56,696 | INFO     | all payload control threads have been joined
[2025-11-26 15:22:45] 2025-11-26 14:21:56,730 | INFO     | [job] control thread has finished
[2025-11-26 15:22:45] 2025-11-26 14:21:56,832 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 15:22:45] 2025-11-26 14:21:56,958 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 15:22:45] 2025-11-26 14:21:56,984 | INFO     | [data] control thread has finished
[2025-11-26 15:22:45] 2025-11-26 14:21:57,235 | INFO     | [data] copytool_out thread has finished
[2025-11-26 15:22:45] 2025-11-26 14:21:57,383 | INFO     | [payload] validate_post thread has finished
[2025-11-26 15:22:45] 2025-11-26 14:21:57,640 | INFO     | [job] validate thread has finished
[2025-11-26 15:22:45] 2025-11-26 14:21:57,702 | INFO     | [payload] control thread has finished
[2025-11-26 15:22:45] 2025-11-26 14:21:57,705 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 15:22:45] 2025-11-26 14:21:58,179 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 15:22:45] 2025-11-26 14:21:59,185 | INFO     | [job] queue monitor thread has finished
[2025-11-26 15:22:45] 2025-11-26 14:22:00,840 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 15:22:45] 2025-11-26 14:22:26,257 | INFO     | PID=3982610 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 15:22:45] 2025-11-26 14:22:26,257 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 15:22:45] 2025-11-26 14:22:26,257 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 15:22:45] 2025-11-26 14:22:26,257 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 15:22:45] 2025-11-26 14:22:39,481 | INFO     | [monitor] cgroup control has ended
[2025-11-26 15:22:45] 2025-11-26 14:22:40,797 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140636519204672)>', '<ExcThread(monitor, started 140636237825792)>']
[2025-11-26 15:22:45] 2025-11-26 14:22:41,337 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 15:22:45] 2025-11-26 14:22:41,338 | INFO     | [monitor] control thread has ended
[2025-11-26 15:22:45] 2025-11-26 14:22:45,823 | INFO     | all workflow threads have been joined
[2025-11-26 15:22:45] 2025-11-26 14:22:45,823 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 15:22:45] 2025-11-26 14:22:45,824 | INFO     | traces error code: 0
[2025-11-26 15:22:45] 2025-11-26 14:22:45,824 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 15:22:45] 2025-11-26 14:22:45,871 [wrapper] ==== pilot stdout END ====
[2025-11-26 15:22:45] 2025-11-26 14:22:45,874 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 15:22:45] 2025-11-26 14:22:45,877 [wrapper] pilotpid: 3982610
[2025-11-26 15:22:45] 2025-11-26 14:22:45,880 [wrapper] Pilot exit status: 0
[2025-11-26 15:22:45] 2025-11-26 14:22:45,887 [wrapper] pandaids: 6897372847
[2025-11-26 15:22:45] 2025-11-26 14:22:45,904 [wrapper] cleanup supervisor_pilot 3982616 3982611
[2025-11-26 15:22:45] 2025-11-26 14:22:45,907 [wrapper] Test setup, not cleaning
[2025-11-26 15:22:45] 2025-11-26 14:22:45,910 [wrapper] apfmon messages muted
[2025-11-26 15:22:45] 2025-11-26 14:22:45,912 [wrapper] ==== wrapper stdout END ====
[2025-11-26 15:22:45] 2025-11-26 14:22:45,915 [wrapper] ==== wrapper stderr END ====
[2025-11-26 15:22:45]  *** Error codes and diagnostics ***
[2025-11-26 15:22:45]     "exeErrorCode": 65,
[2025-11-26 15:22:45]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-26 15:22:45]     "pilotErrorCode": 1305,
[2025-11-26 15:22:45]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-26 15:22:45]  *** Listing of results directory ***
[2025-11-26 15:22:45] total 405116
[2025-11-26 15:22:45] -rw-r--r-- 1 boinc boinc      5112 Nov 25 17:48 queuedata.json
[2025-11-26 15:22:45] -rw-r--r-- 1 boinc boinc    576529 Nov 25 17:48 pilot3.tar.gz
[2025-11-26 15:22:45] -rwx------ 1 boinc boinc     36292 Nov 25 17:48 runpilot2-wrapper.sh
[2025-11-26 15:22:45] -rw-r--r-- 1 boinc boinc       100 Nov 26 15:18 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 15:22:45] -rwxr-xr-x 1 boinc boinc      7986 Nov 26 15:18 run_atlas
[2025-11-26 15:22:45] -rw-r--r-- 1 boinc boinc       105 Nov 26 15:18 job.xml
[2025-11-26 15:22:45] -rw-r--r-- 2 boinc boinc 410645205 Nov 26 15:18 EVNT.47483658._002211.pool.root.1
[2025-11-26 15:22:45] -rw-r--r-- 2 boinc boinc    590097 Nov 26 15:18 input.tar.gz
[2025-11-26 15:22:45] -rw-r--r-- 2 boinc boinc     15847 Nov 26 15:18 start_atlas.sh
[2025-11-26 15:22:45] drwxrwx--x 2 boinc boinc      4096 Nov 26 15:18 shared
[2025-11-26 15:22:45] -rw-r--r-- 1 boinc boinc         0 Nov 26 15:18 boinc_setup_complete
[2025-11-26 15:22:45] -rw-r--r-- 1 boinc boinc      6196 Nov 26 15:18 init_data.xml
[2025-11-26 15:22:45] -rw-r--r-- 1 boinc boinc         0 Nov 26 15:18 boinc_lockfile
[2025-11-26 15:22:45] -rw-r--r-- 1 boinc boinc      2786 Nov 26 15:18 pandaJob.out
[2025-11-26 15:22:45] -rw------- 1 boinc boinc    992360 Nov 26 15:18 agis_schedconf.cvmfs.json
[2025-11-26 15:22:45] -rw------- 1 boinc boinc   1516240 Nov 26 15:18 agis_ddmendpoints.agis.ALL.json
[2025-11-26 15:22:45] drwx------ 5 boinc boinc      4096 Nov 26 15:18 pilot3
[2025-11-26 15:22:45] -rw-r--r-- 1 boinc boinc       523 Nov 26 15:19 boinc_task_state.xml
[2025-11-26 15:22:45] -rw------- 1 boinc boinc       956 Nov 26 15:19 memory_monitor_summary.json
[2025-11-26 15:22:45] -rw------- 1 boinc boinc     55622 Nov 26 15:19 log.47556161._001942.job.log.tgz.1
[2025-11-26 15:22:45] -rw------- 1 boinc boinc        95 Nov 26 15:21 pilot_heartbeat.json
[2025-11-26 15:22:45] -rw------- 1 boinc boinc      8402 Nov 26 15:21 heartbeat.json
[2025-11-26 15:22:45] -rw-r--r-- 1 boinc boinc      8192 Nov 26 15:22 boinc_mmap_file
[2025-11-26 15:22:45] -rw-r--r-- 1 boinc boinc        22 Nov 26 15:22 wrapper_checkpoint.txt
[2025-11-26 15:22:45] -rw------- 1 boinc boinc      4752 Nov 26 15:22 pilotlog.txt
[2025-11-26 15:22:45] -rw------- 1 boinc boinc     93553 Nov 26 15:22 log.47556161._001942.job.log.1
[2025-11-26 15:22:45] -rw------- 1 boinc boinc       186 Nov 26 15:22 output.list
[2025-11-26 15:22:45] -rw-r--r-- 1 boinc boinc       620 Nov 26 15:22 runtime_log
[2025-11-26 15:22:45] -rw------- 1 boinc boinc    163840 Nov 26 15:22 result.tar.gz
[2025-11-26 15:22:45] -rw-r--r-- 1 boinc boinc      8744 Nov 26 15:22 runtime_log.err
[2025-11-26 15:22:45] -rw------- 1 boinc boinc       648 Nov 26 15:22 5iyKDmSOBi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmbPMKDmpJvvmn.diag
[2025-11-26 15:22:45] -rw-r--r-- 1 boinc boinc      8238 Nov 26 15:22 stderr.txt
[2025-11-26 15:22:45] No HITS result produced
[2025-11-26 15:22:45]  *** Contents of shared directory: ***
[2025-11-26 15:22:45] total 401784
[2025-11-26 15:22:45] -rw-r--r-- 2 boinc boinc 410645205 Nov 26 15:18 ATLAS.root_0
[2025-11-26 15:22:45] -rw-r--r-- 2 boinc boinc    590097 Nov 26 15:18 input.tar.gz
[2025-11-26 15:22:45] -rw-r--r-- 2 boinc boinc     15847 Nov 26 15:18 start_atlas.sh
[2025-11-26 15:22:45] -rw------- 1 boinc boinc    163840 Nov 26 15:22 result.tar.gz
15:22:47 (3978891): run_atlas exited; CPU time 31.658970
15:22:47 (3978891): called boinc_finish(0)

</stderr_txt>
]]>

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