Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
09:37:47 (412256): wrapper (7.7.26015): starting
09:37:47 (412256): wrapper: running run_atlas (--nthreads 9)
[2025-11-26 09:37:47] Arguments: --nthreads 9
[2025-11-26 09:37:47] Threads: 9
[2025-11-26 09:37:47] Checking for CVMFS
[2025-11-26 09:37:48] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 09:37:48] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 09:37:48] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 09:37:48] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 09:37:48] 2.13.3.0 15551 28478 345588 153324 1 421 32520444 32935937 25218 16776704 0 53167801 99.571 61990629 39855 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 09:37:48] CVMFS is ok
[2025-11-26 09:37:48] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 09:37:48] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 09:37:48] Further information can be found at the LHC@home message board.
[2025-11-26 09:37:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 09:37:48] Checking for apptainer binary...
[2025-11-26 09:37:48] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 09:37:48] Running /usr/bin/apptainer --version
[2025-11-26 09:37:48] apptainer version 1.4.4-1.el9
[2025-11-26 09:37:48] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 09:37:48] c6-5-7-3.aglt2.org
[2025-11-26 09:37:48] apptainer works
[2025-11-26 09:37:48] Set ATHENA_PROC_NUMBER=9
[2025-11-26 09:37:48] Set ATHENA_CORE_NUMBER=9
[2025-11-26 09:37:48] Starting ATLAS job with PandaID=6897373019
[2025-11-26 09:37:48] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 03:17:20]  *** The last 200 lines of the pilot log: ***
[2025-11-27 03:17:20] 2025-11-27 08:16:32,540 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 03:17:20] 2025-11-27 08:16:32,581 | INFO     | time since job start (63512s) is within the limit (172800.0s)
[2025-11-27 03:17:20] 2025-11-27 08:16:32,620 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2993.488892857144
[2025-11-27 03:17:20] 2025-11-27 08:16:32,710 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6897373019/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 03:17:20] 2025-11-27 08:16:32,711 | INFO     | extracted standard info from prmon json
[2025-11-27 03:17:20] 2025-11-27 08:16:32,711 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 03:17:20] 2025-11-27 08:16:32,711 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 03:17:20] 2025-11-27 08:16:32,744 | INFO     | fitting pss+swap vs Time
[2025-11-27 03:17:20] 2025-11-27 08:16:32,745 | INFO     | sum of square deviations: 349836923237.06104
[2025-11-27 03:17:20] 2025-11-27 08:16:32,763 | INFO     | sum of deviations: 3135908941975.8984
[2025-11-27 03:17:20] 2025-11-27 08:16:32,764 | INFO     | mean x: 1764199627.4293947
[2025-11-27 03:17:20] 2025-11-27 08:16:32,764 | INFO     | mean y: 3020216.284341979
[2025-11-27 03:17:20] 2025-11-27 08:16:32,764 | INFO     | intersect: -15811117799.494717
[2025-11-27 03:17:20] 2025-11-27 08:16:32,765 | INFO     | chi2: 7.524857286229861
[2025-11-27 03:17:20] 2025-11-27 08:16:32,766 | INFO     | sum of square deviations: 344821078361.79553
[2025-11-27 03:17:20] 2025-11-27 08:16:32,783 | INFO     | sum of deviations: 3521825674567.441
[2025-11-27 03:17:20] 2025-11-27 08:16:32,784 | INFO     | mean x: 1764199474.9362934
[2025-11-27 03:17:20] 2025-11-27 08:16:32,784 | INFO     | mean y: 3031945.749034749
[2025-11-27 03:17:20] 2025-11-27 08:16:32,784 | INFO     | intersect: -18015596832.41973
[2025-11-27 03:17:20] 2025-11-27 08:16:32,789 | INFO     | chi2: 3.9694251503379583
[2025-11-27 03:17:20] 2025-11-27 08:16:32,789 | INFO     | current chi2=3.9694251503379583 (change=47.2491636804618 %)
[2025-11-27 03:17:20] 2025-11-27 08:16:32,791 | INFO     | sum of square deviations: 339852853597.33093
[2025-11-27 03:17:20] 2025-11-27 08:16:32,931 | INFO     | sum of deviations: 3776515270515.5303
[2025-11-27 03:17:20] 2025-11-27 08:16:32,931 | INFO     | mean x: 1764199322.4345295
[2025-11-27 03:17:20] 2025-11-27 08:16:32,931 | INFO     | mean y: 3039752.193016489
[2025-11-27 03:17:20] 2025-11-27 08:16:32,931 | INFO     | intersect: -19601108369.220543
[2025-11-27 03:17:20] 2025-11-27 08:16:32,933 | INFO     | chi2: 1.8977295787648427
[2025-11-27 03:17:20] 2025-11-27 08:16:32,933 | INFO     | current chi2=1.8977295787648427 (change=52.19132476642696 %)
[2025-11-27 03:17:20] 2025-11-27 08:16:32,943 | INFO     | sum of square deviations: 334931701252.28577
[2025-11-27 03:17:20] 2025-11-27 08:16:33,058 | INFO     | sum of deviations: 3737065971764.659
[2025-11-27 03:17:20] 2025-11-27 08:16:33,059 | INFO     | mean x: 1764199169.9191034
[2025-11-27 03:17:20] 2025-11-27 08:16:33,059 | INFO     | mean y: 3038529.634502924
[2025-11-27 03:17:20] 2025-11-27 08:16:33,059 | INFO     | intersect: -19681358798.74513
[2025-11-27 03:17:20] 2025-11-27 08:16:33,060 | INFO     | chi2: 1.8938493180760534
[2025-11-27 03:17:20] 2025-11-27 08:16:33,060 | INFO     | current chi2=1.8938493180760534 (change=0.20446857825311637 %)
[2025-11-27 03:17:20] 2025-11-27 08:16:33,060 | INFO     | right removable region: 1025
[2025-11-27 03:17:20] 2025-11-27 08:16:33,102 | INFO     | sum of square deviations: 344820170681.7955
[2025-11-27 03:17:20] 2025-11-27 08:16:33,288 | INFO     | sum of deviations: 2882500958914.9316
[2025-11-27 03:17:20] 2025-11-27 08:16:33,289 | INFO     | mean x: 1764199779.9362934
[2025-11-27 03:17:20] 2025-11-27 08:16:33,289 | INFO     | mean y: 3027907.3474903475
[2025-11-27 03:17:20] 2025-11-27 08:16:33,289 | INFO     | intersect: -14744681158.88537
[2025-11-27 03:17:20] 2025-11-27 08:16:33,290 | INFO     | chi2: 5.787271962462666
[2025-11-27 03:17:20] 2025-11-27 08:16:33,290 | INFO     | current chi2=5.787271962462666 (change=23.091272799909383 %)
[2025-11-27 03:17:20] 2025-11-27 08:16:33,290 | INFO     | left removable region: 10
[2025-11-27 03:17:20] 2025-11-27 08:16:33,333 | INFO     | sum of square deviations: 324273651199.83264
[2025-11-27 03:17:20] 2025-11-27 08:16:33,888 | INFO     | sum of deviations: 3410840104611.1235
[2025-11-27 03:17:20] 2025-11-27 08:16:33,889 | INFO     | mean x: 1764199444.4236453
[2025-11-27 03:17:20] 2025-11-27 08:16:33,889 | INFO     | mean y: 3048278.6532019703
[2025-11-27 03:17:20] 2025-11-27 08:16:33,889 | INFO     | intersect: -18553507874.793343
[2025-11-27 03:17:20] 2025-11-27 08:16:33,988 | INFO     | chi2: 0.11938876956848363
[2025-11-27 03:17:20] 2025-11-27 08:16:33,988 | INFO     | current memory leak: 10.52 B/s (using 1015 data points, chi2=0.12)
[2025-11-27 03:17:20] 2025-11-27 08:16:33,990 | INFO     | could have reported an average CPU frequency of 2995 MHz (38 samples)
[2025-11-27 03:17:20] 2025-11-27 08:16:34,028 | INFO     | ..............................
[2025-11-27 03:17:20] 2025-11-27 08:16:34,028 | INFO     | . Timing measurements:
[2025-11-27 03:17:20] 2025-11-27 08:16:34,028 | INFO     | . get job = 0 s
[2025-11-27 03:17:20] 2025-11-27 08:16:34,028 | INFO     | . initial setup = 2 s
[2025-11-27 03:17:20] 2025-11-27 08:16:34,028 | INFO     | . payload setup = 6 s
[2025-11-27 03:17:20] 2025-11-27 08:16:34,028 | INFO     | . stage-in = 0 s
[2025-11-27 03:17:20] 2025-11-27 08:16:34,028 | INFO     | . payload execution = 63446 s
[2025-11-27 03:17:20] 2025-11-27 08:16:34,029 | INFO     | . stage-out = 13 s
[2025-11-27 03:17:20] 2025-11-27 08:16:34,029 | INFO     | . log creation = 4 s
[2025-11-27 03:17:20] 2025-11-27 08:16:34,029 | INFO     | ..............................
[2025-11-27 03:17:20] 2025-11-27 08:16:34,888 | INFO     | 
[2025-11-27 03:17:20] 2025-11-27 08:16:34,889 | INFO     | job summary report
[2025-11-27 03:17:20] 2025-11-27 08:16:34,889 | INFO     | --------------------------------------------------
[2025-11-27 03:17:20] 2025-11-27 08:16:34,889 | INFO     | PanDA job id: 6897373019
[2025-11-27 03:17:20] 2025-11-27 08:16:34,889 | INFO     | task id: 47556161
[2025-11-27 03:17:20] 2025-11-27 08:16:34,889 | INFO     | errors: (none)
[2025-11-27 03:17:20] 2025-11-27 08:16:34,889 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 03:17:20] 2025-11-27 08:16:34,889 | INFO     | pilot state: finished 
[2025-11-27 03:17:20] 2025-11-27 08:16:34,889 | INFO     | transexitcode: 0
[2025-11-27 03:17:20] 2025-11-27 08:16:34,889 | INFO     | exeerrorcode: 0
[2025-11-27 03:17:20] 2025-11-27 08:16:34,889 | INFO     | exeerrordiag: 
[2025-11-27 03:17:20] 2025-11-27 08:16:34,889 | INFO     | exitcode: 0
[2025-11-27 03:17:20] 2025-11-27 08:16:34,889 | INFO     | exitmsg: OK
[2025-11-27 03:17:20] 2025-11-27 08:16:34,889 | INFO     | cpuconsumptiontime: 246212 s
[2025-11-27 03:17:20] 2025-11-27 08:16:34,889 | INFO     | nevents: 1000
[2025-11-27 03:17:20] 2025-11-27 08:16:34,889 | INFO     | neventsw: 0
[2025-11-27 03:17:20] 2025-11-27 08:16:34,890 | INFO     | pid: 423945
[2025-11-27 03:17:20] 2025-11-27 08:16:34,890 | INFO     | pgrp: 423945
[2025-11-27 03:17:20] 2025-11-27 08:16:34,890 | INFO     | corecount: 9
[2025-11-27 03:17:20] 2025-11-27 08:16:34,890 | INFO     | event service: False
[2025-11-27 03:17:20] 2025-11-27 08:16:34,890 | INFO     | sizes: {0: 2284094, 1: 2284293, 5: 2284555, 11: 2284611, 63457: 2339780, 63458: 2339779, 63473: 2348985, 63474: 2349041, 63500: 2349287}
[2025-11-27 03:17:20] 2025-11-27 08:16:34,890 | INFO     | --------------------------------------------------
[2025-11-27 03:17:20] 2025-11-27 08:16:34,890 | INFO     | 
[2025-11-27 03:17:20] 2025-11-27 08:16:34,890 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-11-27 03:17:20] 2025-11-27 08:16:35,072 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 03:17:20] 2025-11-27 08:16:35,073 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 03:17:20] 2025-11-27 08:16:35,073 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 03:17:20] 2025-11-27 08:16:35,073 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 03:17:20] 2025-11-27 08:16:35,073 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 03:17:20] 2025-11-27 08:16:35,073 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 03:17:20] 2025-11-27 08:16:35,073 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 03:17:20] 2025-11-27 08:16:35,073 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 03:17:20] 2025-11-27 08:16:35,073 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 03:17:20] 2025-11-27 08:16:35,073 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 03:17:20] 2025-11-27 08:16:35,073 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 03:17:20] 2025-11-27 08:16:35,073 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 03:17:20] 2025-11-27 08:16:35,073 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 03:17:20] 2025-11-27 08:16:35,074 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 03:17:20] 2025-11-27 08:16:35,074 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 03:17:20] 2025-11-27 08:16:35,074 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 03:17:20] 2025-11-27 08:16:35,074 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 03:17:20] 2025-11-27 08:16:35,074 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 03:17:20] 2025-11-27 08:16:35,074 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 03:17:20] 2025-11-27 08:16:35,074 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 03:17:20] 2025-11-27 08:16:35,074 | INFO     | job 6897373019 has completed (purged errors)
[2025-11-27 03:17:20] 2025-11-27 08:16:35,074 | INFO     | overall cleanup function is called
[2025-11-27 03:17:20] 2025-11-27 08:16:36,233 | INFO     | --- collectZombieJob: --- 10, [423945]
[2025-11-27 03:17:20] 2025-11-27 08:16:36,233 | INFO     | zombie collector waiting for pid 423945
[2025-11-27 03:17:20] 2025-11-27 08:16:36,233 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 03:17:20] 2025-11-27 08:16:36,233 | INFO     | collected zombie processes
[2025-11-27 03:17:20] 2025-11-27 08:16:36,233 | INFO     | will attempt to kill all subprocesses of pid=423945
[2025-11-27 03:17:20] 2025-11-27 08:16:41,503 | INFO     | PID=416671 has CPU usage=4.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-27 03:17:20] 2025-11-27 08:16:41,504 | INFO     | .. there are 40 such processes running
[2025-11-27 03:17:20] 2025-11-27 08:16:41,585 | INFO     | process IDs to be killed: [423945] (in reverse order)
[2025-11-27 03:17:20] 2025-11-27 08:16:42,140 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 03:17:20] 2025-11-27 08:16:42,140 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 03:17:20] 2025-11-27 08:16:42,265 | INFO     | did not find any defunct processes belonging to 423945
[2025-11-27 03:17:20] 2025-11-27 08:16:42,409 | INFO     | did not find any defunct processes belonging to 423945
[2025-11-27 03:17:20] 2025-11-27 08:16:42,419 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 03:17:20] 2025-11-27 08:16:42,419 | INFO     | ready for new job
[2025-11-27 03:17:20] 2025-11-27 08:16:42,419 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 03:17:20] 2025-11-27 08:16:42,441 | INFO     | ***************************************
[2025-11-27 03:17:20] 2025-11-27 08:16:42,441 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 03:17:20] 2025-11-27 08:16:42,441 | INFO     | ***************************************
[2025-11-27 03:17:20] 2025-11-27 08:16:42,441 | INFO     | 
[2025-11-27 03:17:20] 2025-11-27 08:16:42,460 | INFO     | architecture information:
[2025-11-27 03:17:20] 2025-11-27 08:16:42,481 | INFO     | executing command: cat /etc/os-release
[2025-11-27 03:17:20] 2025-11-27 08:16:42,546 | INFO     | cat /etc/os-release:
[2025-11-27 03:17:20] NAME="CentOS Linux"
[2025-11-27 03:17:20] VERSION="7 (Core)"
[2025-11-27 03:17:20] ID="centos"
[2025-11-27 03:17:20] ID_LIKE="rhel fedora"
[2025-11-27 03:17:20] VERSION_ID="7"
[2025-11-27 03:17:20] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 03:17:20] ANSI_COLOR="0;31"
[2025-11-27 03:17:20] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 03:17:20] HOME_URL="https://www.centos.org/"
[2025-11-27 03:17:20] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 03:17:20] 
[2025-11-27 03:17:20] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 03:17:20] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 03:17:20] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 03:17:20] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 03:17:20] 
[2025-11-27 03:17:20] 2025-11-27 08:16:42,546 | INFO     | ***************************************
[2025-11-27 03:17:20] 2025-11-27 08:16:43,050 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-11-27 03:17:20] 2025-11-27 08:16:43,120 | INFO     | sufficient remaining disk space (69126324224 B)
[2025-11-27 03:17:20] 2025-11-27 08:16:43,120 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 03:17:20] 2025-11-27 08:16:43,121 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 03:17:20] 2025-11-27 08:16:43,121 | INFO     | update_server=False
[2025-11-27 03:17:20] 2025-11-27 08:16:43,121 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 03:17:20] 2025-11-27 08:16:43,121 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 03:17:20] 2025-11-27 08:16:43,121 | INFO     | aborting loop
[2025-11-27 03:17:20] 2025-11-27 08:16:43,125 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 03:17:20] 2025-11-27 08:16:43,614 | INFO     | all job control threads have been joined
[2025-11-27 03:17:20] 2025-11-27 08:16:43,725 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 03:17:20] 2025-11-27 08:16:43,844 | INFO     | all data control threads have been joined
[2025-11-27 03:17:20] 2025-11-27 08:16:44,001 | INFO     | all payload control threads have been joined
[2025-11-27 03:17:20] 2025-11-27 08:16:44,127 | INFO     | [job] retrieve thread has finished
[2025-11-27 03:17:20] 2025-11-27 08:16:44,131 | INFO     | [job] job monitor thread has finished
[2025-11-27 03:17:20] 2025-11-27 08:16:44,158 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 03:17:20] 2025-11-27 08:16:44,389 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 03:17:20] 2025-11-27 08:16:44,620 | INFO     | [job] control thread has finished
[2025-11-27 03:17:20] 2025-11-27 08:16:44,723 | INFO     | [payload] validate_post thread has finished
[2025-11-27 03:17:20] 2025-11-27 08:16:44,723 | INFO     | [payload] failed_post thread has finished
[2025-11-27 03:17:20] 2025-11-27 08:16:44,732 | INFO     | [data] copytool_in thread has finished
[2025-11-27 03:17:20] 2025-11-27 08:16:44,733 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 03:17:20] 2025-11-27 08:16:44,733 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 03:17:20] 2025-11-27 08:16:44,733 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 03:17:20] 2025-11-27 08:16:44,852 | INFO     | [data] control thread has finished
[2025-11-27 03:17:20] 2025-11-27 08:16:45,006 | INFO     | [payload] control thread has finished
[2025-11-27 03:17:20] 2025-11-27 08:16:45,166 | INFO     | [job] queue monitor thread has finished
[2025-11-27 03:17:20] 2025-11-27 08:16:45,613 | INFO     | [job] validate thread has finished
[2025-11-27 03:17:20] 2025-11-27 08:16:45,734 | INFO     | [data] copytool_out thread has finished
[2025-11-27 03:17:20] 2025-11-27 08:16:47,150 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 03:17:20] 2025-11-27 08:16:51,538 | INFO     | [monitor] cgroup control has ended
[2025-11-27 03:17:20] 2025-11-27 08:16:52,279 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140638317303616)>', '<ExcThread(monitor, started 140637680686848)>']
[2025-11-27 03:17:20] 2025-11-27 08:16:57,314 | INFO     | all workflow threads have been joined
[2025-11-27 03:17:20] 2025-11-27 08:16:57,319 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 03:17:20] 2025-11-27 08:16:57,320 | INFO     | traces error code: 0
[2025-11-27 03:17:20] 2025-11-27 08:16:57,320 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 03:17:20] 2025-11-27 08:17:16,572 | INFO     | PID=416671 has CPU usage=2.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-27 03:17:20] 2025-11-27 08:17:16,574 | INFO     | .. there are 40 such processes running
[2025-11-27 03:17:20] 2025-11-27 08:17:16,580 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 03:17:20] 2025-11-27 08:17:16,580 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 03:17:20] 2025-11-27 08:17:16,580 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 03:17:20] 2025-11-27 08:17:16,580 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 03:17:20] 2025-11-27 08:17:16,580 | INFO     | [monitor] control thread has ended
[2025-11-27 03:17:20] 2025-11-27 08:17:19,341 [wrapper] ==== pilot stdout END ====
[2025-11-27 03:17:20] 2025-11-27 08:17:19,344 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 03:17:20] 2025-11-27 08:17:19,347 [wrapper] pilotpid: 416671
[2025-11-27 03:17:20] 2025-11-27 08:17:19,349 [wrapper] Pilot exit status: 0
[2025-11-27 03:17:20] 2025-11-27 08:17:19,422 [wrapper] pandaids: 6897373019
[2025-11-27 03:17:20] 2025-11-27 08:17:19,565 [wrapper] cleanup supervisor_pilot  269966 416672
[2025-11-27 03:17:20] 2025-11-27 08:17:19,570 [wrapper] Test setup, not cleaning
[2025-11-27 03:17:20] 2025-11-27 08:17:19,574 [wrapper] apfmon messages muted
[2025-11-27 03:17:20] 2025-11-27 08:17:19,587 [wrapper] ==== wrapper stdout END ====
[2025-11-27 03:17:20] 2025-11-27 08:17:19,608 [wrapper] ==== wrapper stderr END ====
[2025-11-27 03:17:20]  *** Error codes and diagnostics ***
[2025-11-27 03:17:20]     "exeErrorCode": 0,
[2025-11-27 03:17:20]     "exeErrorDiag": "",
[2025-11-27 03:17:20]     "pilotErrorCode": 0,
[2025-11-27 03:17:20]     "pilotErrorDiag": "",
[2025-11-27 03:17:20]  *** Listing of results directory ***
[2025-11-27 03:17:20] total 1312132
[2025-11-27 03:17:20] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 11:48 pilot3.tar.gz
[2025-11-27 03:17:20] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 11:55 queuedata.json
[2025-11-27 03:17:20] -rwx------. 1 boincer umatlas     36292 Nov 25 11:55 runpilot2-wrapper.sh
[2025-11-27 03:17:20] -rw-r--r--. 1 boincer umatlas       100 Nov 26 09:37 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 03:17:20] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 09:37 run_atlas
[2025-11-27 03:17:20] -rw-r--r--. 1 boincer umatlas       105 Nov 26 09:37 job.xml
[2025-11-27 03:17:20] -rw-r--r--. 2 boincer umatlas 410645205 Nov 26 09:37 EVNT.47483658._002211.pool.root.1
[2025-11-27 03:17:20] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 09:37 start_atlas.sh
[2025-11-27 03:17:20] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 09:37 shared
[2025-11-27 03:17:20] -rw-r--r--. 2 boincer umatlas    590103 Nov 26 09:37 input.tar.gz
[2025-11-27 03:17:20] -rw-r--r--. 1 boincer umatlas         0 Nov 26 09:37 boinc_lockfile
[2025-11-27 03:17:20] -rw-r--r--. 1 boincer umatlas      2786 Nov 26 09:37 pandaJob.out
[2025-11-27 03:17:20] -rw-------. 1 boincer umatlas        57 Nov 26 09:37 setup.sh.local
[2025-11-27 03:17:20] -rw-------. 1 boincer umatlas    992360 Nov 26 09:37 agis_schedconf.cvmfs.json
[2025-11-27 03:17:20] drwx------. 5 boincer umatlas      4096 Nov 26 09:38 pilot3
[2025-11-27 03:17:20] -rw-r--r--. 1 boincer umatlas       533 Nov 27 03:05 boinc_task_state.xml
[2025-11-27 03:17:20] -rw-r--r--. 1 boincer umatlas      6844 Nov 27 03:12 init_data.xml
[2025-11-27 03:17:20] -rw-------. 1 boincer umatlas 907716432 Nov 27 03:14 HITS.47556161._001947.pool.root.1
[2025-11-27 03:17:20] -rw-------. 1 boincer umatlas      1080 Nov 27 03:15 memory_monitor_summary.json
[2025-11-27 03:17:20] -rw-------. 1 boincer umatlas   1516240 Nov 27 03:15 agis_ddmendpoints.agis.ALL.json
[2025-11-27 03:17:20] -rw-------. 1 boincer umatlas   2304018 Nov 27 03:16 log.47556161._001947.job.log.tgz.1
[2025-11-27 03:17:20] -rw-------. 1 boincer umatlas      8646 Nov 27 03:16 heartbeat.json
[2025-11-27 03:17:20] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 03:17 boinc_mmap_file
[2025-11-27 03:17:20] -rw-r--r--. 1 boincer umatlas        29 Nov 27 03:17 wrapper_checkpoint.txt
[2025-11-27 03:17:20] -rw-------. 1 boincer umatlas        95 Nov 27 03:17 pilot_heartbeat.json
[2025-11-27 03:17:20] -rw-------. 1 boincer umatlas       822 Nov 27 03:17 pilotlog.txt
[2025-11-27 03:17:20] -rw-------. 1 boincer umatlas   8366260 Nov 27 03:17 log.47556161._001947.job.log.1
[2025-11-27 03:17:20] -rw-------. 1 boincer umatlas       353 Nov 27 03:17 output.list
[2025-11-27 03:17:20] -rw-r--r--. 1 boincer umatlas       620 Nov 27 03:17 runtime_log
[2025-11-27 03:17:20] -rw-------. 1 boincer umatlas  10690560 Nov 27 03:17 result.tar.gz
[2025-11-27 03:17:20] -rw-r--r--. 1 boincer umatlas      9343 Nov 27 03:17 runtime_log.err
[2025-11-27 03:17:20] -rw-------. 1 boincer umatlas       664 Nov 27 03:17 6sfKDmGVBi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmdQMKDmxjEion.diag
[2025-11-27 03:17:20] -rw-r--r--. 1 boincer umatlas     21419 Nov 27 03:17 stderr.txt
[2025-11-27 03:17:20] HITS file was successfully produced:
[2025-11-27 03:17:20] -rw-------. 1 boincer umatlas 907716432 Nov 27 03:14 shared/HITS.pool.root.1
[2025-11-27 03:17:20]  *** Contents of shared directory: ***
[2025-11-27 03:17:20] total 1298512
[2025-11-27 03:17:20] -rw-r--r--. 2 boincer umatlas 410645205 Nov 26 09:37 ATLAS.root_0
[2025-11-27 03:17:20] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 09:37 start_atlas.sh
[2025-11-27 03:17:20] -rw-r--r--. 2 boincer umatlas    590103 Nov 26 09:37 input.tar.gz
[2025-11-27 03:17:20] -rw-------. 1 boincer umatlas 907716432 Nov 27 03:14 HITS.pool.root.1
[2025-11-27 03:17:20] -rw-------. 1 boincer umatlas  10690560 Nov 27 03:17 result.tar.gz
03:17:21 (412256): run_atlas exited; CPU time 247737.078149
03:17:21 (412256): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN