Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
18:08:50 (61430): wrapper (7.7.26015): starting
18:08:50 (61430): wrapper: running run_atlas (--nthreads 11)
[2025-11-26 18:08:50] Arguments: --nthreads 11
[2025-11-26 18:08:50] Threads: 11
[2025-11-26 18:08:50] Checking for CVMFS
[2025-11-26 18:08:51] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 18:08:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 18:08:51] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 18:08:51] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 18:08:51] 2.13.3.0 15733 29252 346244 153338 0 152 25345508 32935936 30217 16776704 0 154914915 99.710 114221663 26752 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 18:08:51] CVMFS is ok
[2025-11-26 18:08:51] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 18:08:51] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 18:08:51] Further information can be found at the LHC@home message board.
[2025-11-26 18:08:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 18:08:51] Checking for apptainer binary...
[2025-11-26 18:08:51] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 18:08:51] Running /usr/bin/apptainer --version
[2025-11-26 18:08:51] apptainer version 1.4.4-1.el9
[2025-11-26 18:08:51] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 18:08:51] c-8-39.aglt2.org
[2025-11-26 18:08:51] apptainer works
[2025-11-26 18:08:51] Set ATHENA_PROC_NUMBER=11
[2025-11-26 18:08:51] Set ATHENA_CORE_NUMBER=11
[2025-11-26 18:08:51] Starting ATLAS job with PandaID=6897881028
[2025-11-26 18:08:51] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 13:38:35]  *** The last 200 lines of the pilot log: ***
[2025-11-27 13:38:35] 2025-11-27 18:37:41,556 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 13:38:35] 2025-11-27 18:37:41,983 | INFO     | time since job start (70112s) is within the limit (172800.0s)
[2025-11-27 13:38:35] 2025-11-27 18:37:43,989 | INFO     | time since job start (70114s) is within the limit (172800.0s)
[2025-11-27 13:38:35] 2025-11-27 18:37:44,064 | INFO     | monitor loop #3727: job 0:6897881028 is in state 'finished'
[2025-11-27 13:38:35] 2025-11-27 18:37:44,066 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 13:38:35] 2025-11-27 18:37:46,004 | INFO     | time since job start (70117s) is within the limit (172800.0s)
[2025-11-27 13:38:35] 2025-11-27 18:37:46,597 | INFO     | monitor loop #3728: job 0:6897881028 is in state 'finished'
[2025-11-27 13:38:35] 2025-11-27 18:37:46,598 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 13:38:35] 2025-11-27 18:37:48,011 | INFO     | time since job start (70119s) is within the limit (172800.0s)
[2025-11-27 13:38:35] 2025-11-27 18:37:49,168 | INFO     | monitor loop #3729: job 0:6897881028 is in state 'finished'
[2025-11-27 13:38:35] 2025-11-27 18:37:49,169 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 13:38:35] 2025-11-27 18:37:50,066 | INFO     | time since job start (70121s) is within the limit (172800.0s)
[2025-11-27 13:38:35] 2025-11-27 18:37:51,661 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 13:38:35] 2025-11-27 18:37:51,674 | INFO     | found 24 cores (12 cores per socket, 2 sockets) HT, CPU MHz: 2733.919333333333
[2025-11-27 13:38:35] 2025-11-27 18:37:51,685 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6897881028/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 13:38:35] 2025-11-27 18:37:51,712 | INFO     | extracted standard info from prmon json
[2025-11-27 13:38:35] 2025-11-27 18:37:51,712 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 13:38:35] 2025-11-27 18:37:51,713 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 13:38:35] 2025-11-27 18:37:51,874 | INFO     | monitor loop #3730: job 0:6897881028 is in state 'finished'
[2025-11-27 13:38:35] 2025-11-27 18:37:51,875 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 13:38:35] 2025-11-27 18:37:51,892 | INFO     | fitting pss+swap vs Time
[2025-11-27 13:38:35] 2025-11-27 18:37:51,894 | INFO     | sum of square deviations: 470398563755.71765
[2025-11-27 13:38:35] 2025-11-27 18:37:51,926 | INFO     | sum of deviations: 1913946926206.3142
[2025-11-27 13:38:35] 2025-11-27 18:37:51,926 | INFO     | mean x: 1764233615.0156658
[2025-11-27 13:38:35] 2025-11-27 18:37:51,926 | INFO     | mean y: 3433617.5378590077
[2025-11-27 13:38:35] 2025-11-27 18:37:51,926 | INFO     | intersect: -7174839797.26494
[2025-11-27 13:38:35] 2025-11-27 18:37:51,974 | INFO     | chi2: 18.80731756771425
[2025-11-27 13:38:35] 2025-11-27 18:37:52,037 | INFO     | sum of square deviations: 464285580053.1599
[2025-11-27 13:38:35] 2025-11-27 18:37:52,105 | INFO     | time since job start (70123s) is within the limit (172800.0s)
[2025-11-27 13:38:35] 2025-11-27 18:37:52,345 | INFO     | sum of deviations: 2380535486096.7446
[2025-11-27 13:38:35] 2025-11-27 18:37:52,345 | INFO     | mean x: 1764233462.527098
[2025-11-27 13:38:35] 2025-11-27 18:37:52,345 | INFO     | mean y: 3445254.5725524477
[2025-11-27 13:38:35] 2025-11-27 18:37:52,345 | INFO     | intersect: -9042324297.05603
[2025-11-27 13:38:35] 2025-11-27 18:37:52,355 | INFO     | chi2: 15.36437118033658
[2025-11-27 13:38:35] 2025-11-27 18:37:52,355 | INFO     | current chi2=15.36437118033658 (change=18.3064191636134 %)
[2025-11-27 13:38:35] 2025-11-27 18:37:52,356 | INFO     | right removable region: 1143
[2025-11-27 13:38:35] 2025-11-27 18:37:52,373 | INFO     | sum of square deviations: 464283606205.04877
[2025-11-27 13:38:35] 2025-11-27 18:37:52,610 | INFO     | sum of deviations: 1431233068032.6052
[2025-11-27 13:38:35] 2025-11-27 18:37:52,610 | INFO     | mean x: 1764233767.5288463
[2025-11-27 13:38:35] 2025-11-27 18:37:52,610 | INFO     | mean y: 3445652.208916084
[2025-11-27 13:38:35] 2025-11-27 18:37:52,701 | INFO     | intersect: -5435104565.977906
[2025-11-27 13:38:35] 2025-11-27 18:37:52,702 | INFO     | chi2: 15.683169307457911
[2025-11-27 13:38:35] 2025-11-27 18:37:52,703 | INFO     | current chi2=15.683169307457911 (change=16.611344222843538 %)
[2025-11-27 13:38:35] 2025-11-27 18:37:52,703 | INFO     | left removable region: 10
[2025-11-27 13:38:35] 2025-11-27 18:37:52,721 | INFO     | sum of square deviations: 451020417191.92816
[2025-11-27 13:38:35] 2025-11-27 18:37:52,950 | INFO     | sum of deviations: 1839747341220.3303
[2025-11-27 13:38:35] 2025-11-27 18:37:52,951 | INFO     | mean x: 1764233737.0520742
[2025-11-27 13:38:35] 2025-11-27 18:37:52,951 | INFO     | mean y: 3463373.2656663726
[2025-11-27 13:38:35] 2025-11-27 18:37:52,951 | INFO     | intersect: -7192983180.619633
[2025-11-27 13:38:35] 2025-11-27 18:37:52,965 | INFO     | chi2: 11.405254455832504
[2025-11-27 13:38:35] 2025-11-27 18:37:52,965 | INFO     | current memory leak: 4.08 B/s (using 1133 data points, chi2=11.41)
[2025-11-27 13:38:35] 2025-11-27 18:37:52,967 | INFO     | could have reported an average CPU frequency of 2735 MHz (42 samples)
[2025-11-27 13:38:35] 2025-11-27 18:37:52,967 | INFO     | ..............................
[2025-11-27 13:38:35] 2025-11-27 18:37:52,967 | INFO     | . Timing measurements:
[2025-11-27 13:38:35] 2025-11-27 18:37:52,967 | INFO     | . get job = 0 s
[2025-11-27 13:38:35] 2025-11-27 18:37:52,967 | INFO     | . initial setup = 3 s
[2025-11-27 13:38:35] 2025-11-27 18:37:52,968 | INFO     | . payload setup = 15 s
[2025-11-27 13:38:35] 2025-11-27 18:37:52,968 | INFO     | . stage-in = 0 s
[2025-11-27 13:38:35] 2025-11-27 18:37:52,968 | INFO     | . payload execution = 70046 s
[2025-11-27 13:38:35] 2025-11-27 18:37:52,968 | INFO     | . stage-out = 7 s
[2025-11-27 13:38:35] 2025-11-27 18:37:52,983 | INFO     | . log creation = 1 s
[2025-11-27 13:38:35] 2025-11-27 18:37:52,984 | INFO     | ..............................
[2025-11-27 13:38:35] 2025-11-27 18:37:53,629 | INFO     | 
[2025-11-27 13:38:35] 2025-11-27 18:37:53,630 | INFO     | job summary report
[2025-11-27 13:38:35] 2025-11-27 18:37:53,630 | INFO     | --------------------------------------------------
[2025-11-27 13:38:35] 2025-11-27 18:37:53,630 | INFO     | PanDA job id: 6897881028
[2025-11-27 13:38:35] 2025-11-27 18:37:53,630 | INFO     | task id: 47556161
[2025-11-27 13:38:35] 2025-11-27 18:37:53,630 | INFO     | errors: (none)
[2025-11-27 13:38:35] 2025-11-27 18:37:53,630 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 13:38:35] 2025-11-27 18:37:53,630 | INFO     | pilot state: finished 
[2025-11-27 13:38:35] 2025-11-27 18:37:53,630 | INFO     | transexitcode: 0
[2025-11-27 13:38:35] 2025-11-27 18:37:53,630 | INFO     | exeerrorcode: 0
[2025-11-27 13:38:35] 2025-11-27 18:37:53,631 | INFO     | exeerrordiag: 
[2025-11-27 13:38:35] 2025-11-27 18:37:53,631 | INFO     | exitcode: 0
[2025-11-27 13:38:35] 2025-11-27 18:37:53,631 | INFO     | exitmsg: OK
[2025-11-27 13:38:35] 2025-11-27 18:37:53,631 | INFO     | cpuconsumptiontime: 328575 s
[2025-11-27 13:38:35] 2025-11-27 18:37:53,631 | INFO     | nevents: 1000
[2025-11-27 13:38:35] 2025-11-27 18:37:53,631 | INFO     | neventsw: 0
[2025-11-27 13:38:35] 2025-11-27 18:37:53,631 | INFO     | pid: 71790
[2025-11-27 13:38:35] 2025-11-27 18:37:53,631 | INFO     | pgrp: 71790
[2025-11-27 13:38:35] 2025-11-27 18:37:53,632 | INFO     | corecount: 11
[2025-11-27 13:38:35] 2025-11-27 18:37:53,632 | INFO     | event service: False
[2025-11-27 13:38:35] 2025-11-27 18:37:53,632 | INFO     | sizes: {0: 2284093, 1: 2284292, 10: 2284554, 12: 2284582, 70066: 2341202, 70074: 2350196, 70075: 2350380, 70104: 2350626}
[2025-11-27 13:38:35] 2025-11-27 18:37:53,632 | INFO     | --------------------------------------------------
[2025-11-27 13:38:35] 2025-11-27 18:37:53,632 | INFO     | 
[2025-11-27 13:38:35] 2025-11-27 18:37:53,632 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-11-27 13:38:35] 2025-11-27 18:37:53,783 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 13:38:35] 2025-11-27 18:37:53,783 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 13:38:35] 2025-11-27 18:37:53,783 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 13:38:35] 2025-11-27 18:37:53,783 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 13:38:35] 2025-11-27 18:37:53,784 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 13:38:35] 2025-11-27 18:37:53,784 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 13:38:35] 2025-11-27 18:37:53,784 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 13:38:35] 2025-11-27 18:37:53,784 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 13:38:35] 2025-11-27 18:37:53,784 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 13:38:35] 2025-11-27 18:37:53,784 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 13:38:35] 2025-11-27 18:37:53,785 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 13:38:35] 2025-11-27 18:37:53,785 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 13:38:35] 2025-11-27 18:37:53,785 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 13:38:35] 2025-11-27 18:37:53,785 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 13:38:35] 2025-11-27 18:37:53,785 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 13:38:35] 2025-11-27 18:37:53,785 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 13:38:35] 2025-11-27 18:37:53,785 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 13:38:35] 2025-11-27 18:37:53,786 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 13:38:35] 2025-11-27 18:37:53,786 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 13:38:35] 2025-11-27 18:37:53,786 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 13:38:35] 2025-11-27 18:37:53,786 | INFO     | job 6897881028 has completed (purged errors)
[2025-11-27 13:38:35] 2025-11-27 18:37:53,790 | INFO     | overall cleanup function is called
[2025-11-27 13:38:35] 2025-11-27 18:37:54,859 | INFO     | --- collectZombieJob: --- 10, [71790]
[2025-11-27 13:38:35] 2025-11-27 18:37:54,860 | INFO     | zombie collector waiting for pid 71790
[2025-11-27 13:38:35] 2025-11-27 18:37:54,860 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 13:38:35] 2025-11-27 18:37:54,860 | INFO     | collected zombie processes
[2025-11-27 13:38:35] 2025-11-27 18:37:54,860 | INFO     | will attempt to kill all subprocesses of pid=71790
[2025-11-27 13:38:35] 2025-11-27 18:37:56,504 | INFO     | PID=65267 has CPU usage=4.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-27 13:38:35] 2025-11-27 18:37:56,505 | INFO     | .. there are 52 such processes running
[2025-11-27 13:38:35] 2025-11-27 18:37:56,571 | INFO     | process IDs to be killed: [71790] (in reverse order)
[2025-11-27 13:38:35] 2025-11-27 18:37:56,962 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 13:38:35] 2025-11-27 18:37:56,962 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 13:38:35] 2025-11-27 18:37:56,996 | INFO     | did not find any defunct processes belonging to 71790
[2025-11-27 13:38:35] 2025-11-27 18:37:57,031 | INFO     | did not find any defunct processes belonging to 71790
[2025-11-27 13:38:35] 2025-11-27 18:37:57,033 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 13:38:35] 2025-11-27 18:37:57,033 | INFO     | ready for new job
[2025-11-27 13:38:35] 2025-11-27 18:37:57,033 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 13:38:35] 2025-11-27 18:37:57,042 | INFO     | ***************************************
[2025-11-27 13:38:35] 2025-11-27 18:37:57,042 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 13:38:35] 2025-11-27 18:37:57,043 | INFO     | ***************************************
[2025-11-27 13:38:35] 2025-11-27 18:37:57,043 | INFO     | 
[2025-11-27 13:38:35] 2025-11-27 18:37:57,049 | INFO     | architecture information:
[2025-11-27 13:38:35] 2025-11-27 18:37:57,053 | INFO     | executing command: cat /etc/os-release
[2025-11-27 13:38:35] 2025-11-27 18:37:57,104 | INFO     | cat /etc/os-release:
[2025-11-27 13:38:35] NAME="CentOS Linux"
[2025-11-27 13:38:35] VERSION="7 (Core)"
[2025-11-27 13:38:35] ID="centos"
[2025-11-27 13:38:35] ID_LIKE="rhel fedora"
[2025-11-27 13:38:35] VERSION_ID="7"
[2025-11-27 13:38:35] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 13:38:35] ANSI_COLOR="0;31"
[2025-11-27 13:38:35] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 13:38:35] HOME_URL="https://www.centos.org/"
[2025-11-27 13:38:35] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 13:38:35] 
[2025-11-27 13:38:35] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 13:38:35] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 13:38:35] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 13:38:35] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 13:38:35] 
[2025-11-27 13:38:35] 2025-11-27 18:37:57,105 | INFO     | ***************************************
[2025-11-27 13:38:35] 2025-11-27 18:37:57,608 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-11-27 13:38:35] 2025-11-27 18:37:57,684 | INFO     | sufficient remaining disk space (69784829952 B)
[2025-11-27 13:38:35] 2025-11-27 18:37:57,709 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 13:38:35] 2025-11-27 18:37:57,709 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 13:38:35] 2025-11-27 18:37:57,709 | INFO     | update_server=False
[2025-11-27 13:38:35] 2025-11-27 18:37:57,709 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 13:38:35] 2025-11-27 18:37:57,709 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 13:38:35] 2025-11-27 18:37:57,712 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 13:38:35] 2025-11-27 18:37:57,878 | INFO     | all job control threads have been joined
[2025-11-27 13:38:35] 2025-11-27 18:37:58,002 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 13:38:35] 2025-11-27 18:37:58,003 | INFO     | aborting loop
[2025-11-27 13:38:35] 2025-11-27 18:37:58,286 | INFO     | all data control threads have been joined
[2025-11-27 13:38:35] 2025-11-27 18:37:58,664 | INFO     | all payload control threads have been joined
[2025-11-27 13:38:35] 2025-11-27 18:37:58,719 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 13:38:35] 2025-11-27 18:37:58,723 | INFO     | [job] retrieve thread has finished
[2025-11-27 13:38:35] 2025-11-27 18:37:58,884 | INFO     | [job] control thread has finished
[2025-11-27 13:38:35] 2025-11-27 18:37:58,895 | INFO     | [payload] validate_post thread has finished
[2025-11-27 13:38:35] 2025-11-27 18:37:59,008 | INFO     | [job] job monitor thread has finished
[2025-11-27 13:38:35] 2025-11-27 18:37:59,076 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 13:38:35] 2025-11-27 18:37:59,154 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 13:38:35] 2025-11-27 18:37:59,331 | INFO     | [data] control thread has finished
[2025-11-27 13:38:35] 2025-11-27 18:37:59,385 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 13:38:35] 2025-11-27 18:37:59,394 | INFO     | [data] copytool_in thread has finished
[2025-11-27 13:38:35] 2025-11-27 18:37:59,652 | INFO     | [payload] failed_post thread has finished
[2025-11-27 13:38:35] 2025-11-27 18:37:59,714 | INFO     | [payload] control thread has finished
[2025-11-27 13:38:35] 2025-11-27 18:37:59,727 | INFO     | [job] queue monitor thread has finished
[2025-11-27 13:38:35] 2025-11-27 18:37:59,730 | INFO     | [data] copytool_out thread has finished
[2025-11-27 13:38:35] 2025-11-27 18:38:00,107 | INFO     | [job] validate thread has finished
[2025-11-27 13:38:35] 2025-11-27 18:38:00,154 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 13:38:35] 2025-11-27 18:38:01,744 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 13:38:35] 2025-11-27 18:38:20,128 | INFO     | [monitor] cgroup control has ended
[2025-11-27 13:38:35] 2025-11-27 18:38:21,063 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139880612501312)>', '<ExcThread(monitor, started 139879870609152)>']
[2025-11-27 13:38:35] 2025-11-27 18:38:26,136 | INFO     | all workflow threads have been joined
[2025-11-27 13:38:35] 2025-11-27 18:38:26,137 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 13:38:35] 2025-11-27 18:38:26,137 | INFO     | traces error code: 0
[2025-11-27 13:38:35] 2025-11-27 18:38:26,137 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 13:38:35] 2025-11-27 18:38:31,316 | INFO     | PID=65267 has CPU usage=4.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-27 13:38:35] 2025-11-27 18:38:31,317 | INFO     | .. there are 52 such processes running
[2025-11-27 13:38:35] 2025-11-27 18:38:31,318 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 13:38:35] 2025-11-27 18:38:31,318 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 13:38:35] 2025-11-27 18:38:31,318 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 13:38:35] 2025-11-27 18:38:31,318 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 13:38:35] 2025-11-27 18:38:31,318 | INFO     | [monitor] control thread has ended
[2025-11-27 13:38:35] 2025-11-27 18:38:34,516 [wrapper] ==== pilot stdout END ====
[2025-11-27 13:38:35] 2025-11-27 18:38:34,600 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 13:38:35] 2025-11-27 18:38:34,691 [wrapper] pilotpid: 65267
[2025-11-27 13:38:35] 2025-11-27 18:38:34,726 [wrapper] Pilot exit status: 0
[2025-11-27 13:38:35] 2025-11-27 18:38:34,876 [wrapper] pandaids: 6897881028
[2025-11-27 13:38:35] 2025-11-27 18:38:35,074 [wrapper] cleanup supervisor_pilot  417948 65268
[2025-11-27 13:38:35] 2025-11-27 18:38:35,077 [wrapper] Test setup, not cleaning
[2025-11-27 13:38:35] 2025-11-27 18:38:35,080 [wrapper] apfmon messages muted
[2025-11-27 13:38:35] 2025-11-27 18:38:35,083 [wrapper] ==== wrapper stdout END ====
[2025-11-27 13:38:35] 2025-11-27 18:38:35,085 [wrapper] ==== wrapper stderr END ====
[2025-11-27 13:38:35]  *** Error codes and diagnostics ***
[2025-11-27 13:38:35]     "exeErrorCode": 0,
[2025-11-27 13:38:35]     "exeErrorDiag": "",
[2025-11-27 13:38:35]     "pilotErrorCode": 0,
[2025-11-27 13:38:35]     "pilotErrorDiag": "",
[2025-11-27 13:38:35]  *** Listing of results directory ***
[2025-11-27 13:38:35] total 1312776
[2025-11-27 13:38:35] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 20:44 pilot3.tar.gz
[2025-11-27 13:38:35] -rwx------. 1 boincer umatlas     36292 Nov 25 20:52 runpilot2-wrapper.sh
[2025-11-27 13:38:35] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 20:52 queuedata.json
[2025-11-27 13:38:35] -rw-r--r--. 1 boincer umatlas       100 Nov 26 18:08 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 13:38:35] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 18:08 run_atlas
[2025-11-27 13:38:35] -rw-r--r--. 1 boincer umatlas       105 Nov 26 18:08 job.xml
[2025-11-27 13:38:35] -rw-r--r--. 2 boincer umatlas 407553950 Nov 26 18:08 EVNT.47483658._002357.pool.root.1
[2025-11-27 13:38:35] -rw-r--r--. 2 boincer umatlas    590101 Nov 26 18:08 input.tar.gz
[2025-11-27 13:38:35] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 18:08 start_atlas.sh
[2025-11-27 13:38:35] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 18:08 shared
[2025-11-27 13:38:35] -rw-r--r--. 1 boincer umatlas         0 Nov 26 18:08 boinc_lockfile
[2025-11-27 13:38:35] -rw-r--r--. 1 boincer umatlas      2785 Nov 26 18:08 pandaJob.out
[2025-11-27 13:38:35] -rw-------. 1 boincer umatlas        57 Nov 26 18:08 setup.sh.local
[2025-11-27 13:38:35] -rw-------. 1 boincer umatlas    991546 Nov 26 18:09 agis_schedconf.cvmfs.json
[2025-11-27 13:38:35] drwx------. 5 boincer umatlas      4096 Nov 26 18:09 pilot3
[2025-11-27 13:38:35] -rw-r--r--. 1 boincer umatlas       533 Nov 27 13:05 boinc_task_state.xml
[2025-11-27 13:38:35] -rw-------. 1 boincer umatlas 911200325 Nov 27 13:36 HITS.47556161._003396.pool.root.1
[2025-11-27 13:38:35] -rw-r--r--. 1 boincer umatlas      6613 Nov 27 13:36 init_data.xml
[2025-11-27 13:38:35] -rw-------. 1 boincer umatlas      1058 Nov 27 13:37 memory_monitor_summary.json
[2025-11-27 13:38:35] -rw-------. 1 boincer umatlas   1516240 Nov 27 13:37 agis_ddmendpoints.agis.ALL.json
[2025-11-27 13:38:35] -rw-------. 1 boincer umatlas   2552833 Nov 27 13:37 log.47556161._003396.job.log.tgz.1
[2025-11-27 13:38:35] -rw-------. 1 boincer umatlas      8620 Nov 27 13:37 heartbeat.json
[2025-11-27 13:38:35] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 13:38 boinc_mmap_file
[2025-11-27 13:38:35] -rw-------. 1 boincer umatlas        95 Nov 27 13:38 pilot_heartbeat.json
[2025-11-27 13:38:35] -rw-------. 1 boincer umatlas       821 Nov 27 13:38 pilotlog.txt
[2025-11-27 13:38:35] -rw-r--r--. 1 boincer umatlas        29 Nov 27 13:38 wrapper_checkpoint.txt
[2025-11-27 13:38:35] -rw-------. 1 boincer umatlas   8250737 Nov 27 13:38 log.47556161._003396.job.log.1
[2025-11-27 13:38:35] -rw-------. 1 boincer umatlas       353 Nov 27 13:38 output.list
[2025-11-27 13:38:35] -rw-r--r--. 1 boincer umatlas       620 Nov 27 13:38 runtime_log
[2025-11-27 13:38:35] -rw-------. 1 boincer umatlas  10823680 Nov 27 13:38 result.tar.gz
[2025-11-27 13:38:35] -rw-r--r--. 1 boincer umatlas      9335 Nov 27 13:38 runtime_log.err
[2025-11-27 13:38:35] -rw-------. 1 boincer umatlas       658 Nov 27 13:38 8EaNDmItJi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmMgMKDmIbzkWo.diag
[2025-11-27 13:38:35] -rw-r--r--. 1 boincer umatlas     21838 Nov 27 13:38 stderr.txt
[2025-11-27 13:38:35] HITS file was successfully produced:
[2025-11-27 13:38:35] -rw-------. 1 boincer umatlas 911200325 Nov 27 13:36 shared/HITS.pool.root.1
[2025-11-27 13:38:35]  *** Contents of shared directory: ***
[2025-11-27 13:38:35] total 1299024
[2025-11-27 13:38:35] -rw-r--r--. 2 boincer umatlas 407553950 Nov 26 18:08 ATLAS.root_0
[2025-11-27 13:38:35] -rw-r--r--. 2 boincer umatlas    590101 Nov 26 18:08 input.tar.gz
[2025-11-27 13:38:35] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 18:08 start_atlas.sh
[2025-11-27 13:38:35] -rw-------. 1 boincer umatlas 911200325 Nov 27 13:36 HITS.pool.root.1
[2025-11-27 13:38:35] -rw-------. 1 boincer umatlas  10823680 Nov 27 13:38 result.tar.gz
13:38:57 (61430): run_atlas exited; CPU time 331264.027819
13:38:57 (61430): called boinc_finish(0)

</stderr_txt>
]]>

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