Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
08:49:27 (25026): wrapper (7.7.26015): starting
08:49:27 (25026): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 08:49:27] Arguments: --nthreads 8
[2025-11-26 08:49:27] Threads: 8
[2025-11-26 08:49:27] Checking for CVMFS
[2025-11-26 08:49:27] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 08:49:27] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 08:49:27] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 08:49:27] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 08:49:27] 2.11.2.0 2860 65795 80820 153323 0 82 19198994 20275200 1 130560 0 16056783 99.804 4449315 29721 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-26 08:49:27] CVMFS is ok
[2025-11-26 08:49:28] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 08:49:28] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 08:49:28] Further information can be found at the LHC@home message board.
[2025-11-26 08:49:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 08:49:28] Checking for apptainer binary...
[2025-11-26 08:49:28] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 08:49:28] Running /usr/bin/apptainer --version
[2025-11-26 08:49:28] apptainer version 1.3.2-1.el7
[2025-11-26 08:49:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 08:49:29] c-204-9.aglt2.org
[2025-11-26 08:49:29] apptainer works
[2025-11-26 08:49:29] Set ATHENA_PROC_NUMBER=8
[2025-11-26 08:49:29] Set ATHENA_CORE_NUMBER=8
[2025-11-26 08:49:29] Starting ATLAS job with PandaID=6897881004
[2025-11-26 08:49:29] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
12:46:13 (21295): wrapper (7.7.26015): starting
12:46:13 (21295): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 12:46:13] Arguments: --nthreads 8
[2025-11-26 12:46:13] Threads: 8
[2025-11-26 12:46:13] This job has been restarted, cleaning up previous attempt
[2025-11-26 12:46:13] Checking for CVMFS
[2025-11-26 12:46:14] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 12:46:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 12:46:14] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 12:46:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 12:46:14] 2.11.2.0 2860 66032 80036 153330 3 57 19500452 20275201 1 130560 0 16174571 99.805 4458614 29734 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-26 12:46:14] CVMFS is ok
[2025-11-26 12:46:14] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 12:46:14] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 12:46:14] Further information can be found at the LHC@home message board.
[2025-11-26 12:46:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 12:46:14] Checking for apptainer binary...
[2025-11-26 12:46:14] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 12:46:14] Running /usr/bin/apptainer --version
[2025-11-26 12:46:14] apptainer version 1.3.2-1.el7
[2025-11-26 12:46:14] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 12:46:16] c-204-9.aglt2.org
[2025-11-26 12:46:16] apptainer works
[2025-11-26 12:46:16] Set ATHENA_PROC_NUMBER=8
[2025-11-26 12:46:16] Set ATHENA_CORE_NUMBER=8
[2025-11-26 12:46:16] Starting ATLAS job with PandaID=6897881004
[2025-11-26 12:46:16] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 01:36:04]  *** The last 200 lines of the pilot log: ***
[2025-11-27 01:36:04] 2025-11-27 06:35:29,167 | INFO     | time since job start (46133s) is within the limit (172800.0s)
[2025-11-27 01:36:04] 2025-11-27 06:35:30,722 | INFO     | monitor loop #3387: job 0:6897881004 is in state 'finished'
[2025-11-27 01:36:04] 2025-11-27 06:35:30,723 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 01:36:04] 2025-11-27 06:35:31,172 | INFO     | time since job start (46135s) is within the limit (172800.0s)
[2025-11-27 01:36:04] 2025-11-27 06:35:32,251 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-27 01:36:04] 2025-11-27 06:35:32,254 | INFO     | found 8 cores (4 cores per socket, 2 sockets) , CPU MHz: 1712.375
[2025-11-27 01:36:04] 2025-11-27 06:35:32,256 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6897881004/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 01:36:04] 2025-11-27 06:35:32,258 | INFO     | extracted standard info from prmon json
[2025-11-27 01:36:04] 2025-11-27 06:35:32,258 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 01:36:04] 2025-11-27 06:35:32,258 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 01:36:04] 2025-11-27 06:35:32,272 | INFO     | fitting pss+swap vs Time
[2025-11-27 01:36:04] 2025-11-27 06:35:32,273 | INFO     | sum of square deviations: 133982757894.23807
[2025-11-27 01:36:04] 2025-11-27 06:35:32,288 | INFO     | sum of deviations: 864925247185.8247
[2025-11-27 01:36:04] 2025-11-27 06:35:32,288 | INFO     | mean x: 1764202256.9126985
[2025-11-27 01:36:04] 2025-11-27 06:35:32,288 | INFO     | mean y: 2859732.997354497
[2025-11-27 01:36:04] 2025-11-27 06:35:32,288 | INFO     | intersect: -11385942058.577255
[2025-11-27 01:36:04] 2025-11-27 06:35:32,289 | INFO     | chi2: 5.657639494871496
[2025-11-27 01:36:04] 2025-11-27 06:35:32,290 | INFO     | sum of square deviations: 131342040748.3807
[2025-11-27 01:36:04] 2025-11-27 06:35:32,301 | INFO     | sum of deviations: 1082099594068.2372
[2025-11-27 01:36:04] 2025-11-27 06:35:32,301 | INFO     | mean x: 1764202104.415446
[2025-11-27 01:36:04] 2025-11-27 06:35:32,302 | INFO     | mean y: 2872267.169107856
[2025-11-27 01:36:04] 2025-11-27 06:35:32,302 | INFO     | intersect: -14532019761.039465
[2025-11-27 01:36:04] 2025-11-27 06:35:32,303 | INFO     | chi2: 3.221882156069196
[2025-11-27 01:36:04] 2025-11-27 06:35:32,303 | INFO     | current chi2=3.221882156069196 (change=43.05253703439838 %)
[2025-11-27 01:36:04] 2025-11-27 06:35:32,304 | INFO     | sum of square deviations: 128736254490.01231
[2025-11-27 01:36:04] 2025-11-27 06:35:32,315 | INFO     | sum of deviations: 1189694647864.92
[2025-11-27 01:36:04] 2025-11-27 06:35:32,315 | INFO     | mean x: 1764201951.9182305
[2025-11-27 01:36:04] 2025-11-27 06:35:32,316 | INFO     | mean y: 2878558.7855227883
[2025-11-27 01:36:04] 2025-11-27 06:35:32,316 | INFO     | intersect: -16300699856.359362
[2025-11-27 01:36:04] 2025-11-27 06:35:32,316 | INFO     | chi2: 2.506529584129969
[2025-11-27 01:36:04] 2025-11-27 06:35:32,317 | INFO     | current chi2=2.506529584129969 (change=22.20294030902674 %)
[2025-11-27 01:36:04] 2025-11-27 06:35:32,317 | INFO     | right removable region: 745
[2025-11-27 01:36:04] 2025-11-27 06:35:32,318 | INFO     | sum of square deviations: 131341850428.3808
[2025-11-27 01:36:04] 2025-11-27 06:35:32,329 | INFO     | sum of deviations: 661617094434.3705
[2025-11-27 01:36:04] 2025-11-27 06:35:32,329 | INFO     | mean x: 1764202409.415446
[2025-11-27 01:36:04] 2025-11-27 06:35:32,329 | INFO     | mean y: 2871454.950732357
[2025-11-27 01:36:04] 2025-11-27 06:35:32,329 | INFO     | intersect: -8884063427.60628
[2025-11-27 01:36:04] 2025-11-27 06:35:32,330 | INFO     | chi2: 3.4971978063974998
[2025-11-27 01:36:04] 2025-11-27 06:35:32,330 | INFO     | current chi2=3.4971978063974998 (change=38.186273452601235 %)
[2025-11-27 01:36:04] 2025-11-27 06:35:32,331 | INFO     | sum of square deviations: 128735873850.01242
[2025-11-27 01:36:04] 2025-11-27 06:35:32,343 | INFO     | sum of deviations: 616597174728.1353
[2025-11-27 01:36:04] 2025-11-27 06:35:32,343 | INFO     | mean x: 1764202561.9182305
[2025-11-27 01:36:04] 2025-11-27 06:35:32,343 | INFO     | mean y: 2874088.5268096514
[2025-11-27 01:36:04] 2025-11-27 06:35:32,343 | INFO     | intersect: -8447003034.257906
[2025-11-27 01:36:04] 2025-11-27 06:35:32,344 | INFO     | chi2: 3.452903148335562
[2025-11-27 01:36:04] 2025-11-27 06:35:32,344 | INFO     | current chi2=3.452903148335562 (change=1.2665757133013318 %)
[2025-11-27 01:36:04] 2025-11-27 06:35:32,344 | INFO     | left removable region: 20
[2025-11-27 01:36:04] 2025-11-27 06:35:32,346 | INFO     | sum of square deviations: 118167387745.73236
[2025-11-27 01:36:04] 2025-11-27 06:35:32,359 | INFO     | sum of deviations: 900066037022.8074
[2025-11-27 01:36:04] 2025-11-27 06:35:32,359 | INFO     | mean x: 1764202531.4303448
[2025-11-27 01:36:04] 2025-11-27 06:35:32,359 | INFO     | mean y: 2897476.372413793
[2025-11-27 01:36:04] 2025-11-27 06:35:32,360 | INFO     | intersect: -13434809925.494583
[2025-11-27 01:36:04] 2025-11-27 06:35:32,360 | INFO     | chi2: 0.21596099661501383
[2025-11-27 01:36:04] 2025-11-27 06:35:32,361 | INFO     | current memory leak: 7.62 B/s (using 725 data points, chi2=0.22)
[2025-11-27 01:36:04] 2025-11-27 06:35:32,361 | INFO     | could have reported an average CPU frequency of 2161 MHz (29 samples)
[2025-11-27 01:36:04] 2025-11-27 06:35:32,361 | INFO     | ..............................
[2025-11-27 01:36:04] 2025-11-27 06:35:32,362 | INFO     | . Timing measurements:
[2025-11-27 01:36:04] 2025-11-27 06:35:32,362 | INFO     | . get job = 0 s
[2025-11-27 01:36:04] 2025-11-27 06:35:32,362 | INFO     | . initial setup = 2 s
[2025-11-27 01:36:04] 2025-11-27 06:35:32,362 | INFO     | . payload setup = 9 s
[2025-11-27 01:36:04] 2025-11-27 06:35:32,362 | INFO     | . stage-in = 0 s
[2025-11-27 01:36:04] 2025-11-27 06:35:32,362 | INFO     | . payload execution = 46092 s
[2025-11-27 01:36:04] 2025-11-27 06:35:32,362 | INFO     | . stage-out = 3 s
[2025-11-27 01:36:04] 2025-11-27 06:35:32,362 | INFO     | . log creation = 0 s
[2025-11-27 01:36:04] 2025-11-27 06:35:32,363 | INFO     | ..............................
[2025-11-27 01:36:04] 2025-11-27 06:35:32,628 | INFO     | 
[2025-11-27 01:36:04] 2025-11-27 06:35:32,628 | INFO     | job summary report
[2025-11-27 01:36:04] 2025-11-27 06:35:32,628 | INFO     | --------------------------------------------------
[2025-11-27 01:36:04] 2025-11-27 06:35:32,629 | INFO     | PanDA job id: 6897881004
[2025-11-27 01:36:04] 2025-11-27 06:35:32,629 | INFO     | task id: 47556161
[2025-11-27 01:36:04] 2025-11-27 06:35:32,629 | INFO     | errors: (none)
[2025-11-27 01:36:04] 2025-11-27 06:35:32,629 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 01:36:04] 2025-11-27 06:35:32,629 | INFO     | pilot state: finished 
[2025-11-27 01:36:04] 2025-11-27 06:35:32,629 | INFO     | transexitcode: 0
[2025-11-27 01:36:04] 2025-11-27 06:35:32,630 | INFO     | exeerrorcode: 0
[2025-11-27 01:36:04] 2025-11-27 06:35:32,630 | INFO     | exeerrordiag: 
[2025-11-27 01:36:04] 2025-11-27 06:35:32,630 | INFO     | exitcode: 0
[2025-11-27 01:36:04] 2025-11-27 06:35:32,630 | INFO     | exitmsg: OK
[2025-11-27 01:36:04] 2025-11-27 06:35:32,630 | INFO     | cpuconsumptiontime: 349960 s
[2025-11-27 01:36:04] 2025-11-27 06:35:32,630 | INFO     | nevents: 1000
[2025-11-27 01:36:04] 2025-11-27 06:35:32,631 | INFO     | neventsw: 0
[2025-11-27 01:36:04] 2025-11-27 06:35:32,631 | INFO     | pid: 31871
[2025-11-27 01:36:04] 2025-11-27 06:35:32,631 | INFO     | pgrp: 31871
[2025-11-27 01:36:04] 2025-11-27 06:35:32,631 | INFO     | corecount: 8
[2025-11-27 01:36:04] 2025-11-27 06:35:32,631 | INFO     | event service: False
[2025-11-27 01:36:04] 2025-11-27 06:35:32,632 | INFO     | sizes: {0: 2284264, 6: 2284526, 11: 2284554, 46105: 2330923, 46111: 2339917, 46112: 2339973, 46119: 2340347}
[2025-11-27 01:36:04] 2025-11-27 06:35:32,632 | INFO     | --------------------------------------------------
[2025-11-27 01:36:04] 2025-11-27 06:35:32,632 | INFO     | 
[2025-11-27 01:36:04] 2025-11-27 06:35:32,632 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-27 01:36:04] 2025-11-27 06:35:32,664 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 01:36:04] 2025-11-27 06:35:32,664 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 01:36:04] 2025-11-27 06:35:32,665 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 01:36:04] 2025-11-27 06:35:32,665 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 01:36:04] 2025-11-27 06:35:32,665 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 01:36:04] 2025-11-27 06:35:32,665 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 01:36:04] 2025-11-27 06:35:32,665 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 01:36:04] 2025-11-27 06:35:32,666 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 01:36:04] 2025-11-27 06:35:32,666 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 01:36:04] 2025-11-27 06:35:32,666 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 01:36:04] 2025-11-27 06:35:32,666 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 01:36:04] 2025-11-27 06:35:32,666 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 01:36:04] 2025-11-27 06:35:32,666 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 01:36:04] 2025-11-27 06:35:32,667 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 01:36:04] 2025-11-27 06:35:32,667 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 01:36:04] 2025-11-27 06:35:32,667 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 01:36:04] 2025-11-27 06:35:32,667 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 01:36:04] 2025-11-27 06:35:32,667 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 01:36:04] 2025-11-27 06:35:32,667 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 01:36:04] 2025-11-27 06:35:32,668 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 01:36:04] 2025-11-27 06:35:32,668 | INFO     | job 6897881004 has completed (purged errors)
[2025-11-27 01:36:04] 2025-11-27 06:35:32,668 | INFO     | overall cleanup function is called
[2025-11-27 01:36:04] 2025-11-27 06:35:33,684 | INFO     | --- collectZombieJob: --- 10, [31871]
[2025-11-27 01:36:04] 2025-11-27 06:35:33,684 | INFO     | zombie collector waiting for pid 31871
[2025-11-27 01:36:04] 2025-11-27 06:35:33,684 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 01:36:04] 2025-11-27 06:35:33,685 | INFO     | collected zombie processes
[2025-11-27 01:36:04] 2025-11-27 06:35:33,685 | INFO     | will attempt to kill all subprocesses of pid=31871
[2025-11-27 01:36:04] 2025-11-27 06:35:33,777 | INFO     | process IDs to be killed: [31871] (in reverse order)
[2025-11-27 01:36:04] 2025-11-27 06:35:33,836 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 01:36:04] 2025-11-27 06:35:33,837 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 01:36:04] 2025-11-27 06:35:33,841 | INFO     | did not find any defunct processes belonging to 31871
[2025-11-27 01:36:04] 2025-11-27 06:35:33,844 | INFO     | did not find any defunct processes belonging to 31871
[2025-11-27 01:36:04] 2025-11-27 06:35:33,847 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 01:36:04] 2025-11-27 06:35:33,847 | INFO     | ready for new job
[2025-11-27 01:36:04] 2025-11-27 06:35:33,848 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 01:36:04] 2025-11-27 06:35:33,851 | INFO     | ***************************************
[2025-11-27 01:36:04] 2025-11-27 06:35:33,851 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 01:36:04] 2025-11-27 06:35:33,851 | INFO     | ***************************************
[2025-11-27 01:36:04] 2025-11-27 06:35:33,851 | INFO     | 
[2025-11-27 01:36:04] 2025-11-27 06:35:33,852 | INFO     | architecture information:
[2025-11-27 01:36:04] 2025-11-27 06:35:33,853 | INFO     | executing command: cat /etc/os-release
[2025-11-27 01:36:04] 2025-11-27 06:35:33,872 | INFO     | cat /etc/os-release:
[2025-11-27 01:36:04] NAME="CentOS Linux"
[2025-11-27 01:36:04] VERSION="7 (Core)"
[2025-11-27 01:36:04] ID="centos"
[2025-11-27 01:36:04] ID_LIKE="rhel fedora"
[2025-11-27 01:36:04] VERSION_ID="7"
[2025-11-27 01:36:04] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 01:36:04] ANSI_COLOR="0;31"
[2025-11-27 01:36:04] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 01:36:04] HOME_URL="https://www.centos.org/"
[2025-11-27 01:36:04] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 01:36:04] 
[2025-11-27 01:36:04] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 01:36:04] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 01:36:04] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 01:36:04] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 01:36:04] 
[2025-11-27 01:36:04] 2025-11-27 06:35:33,872 | INFO     | ***************************************
[2025-11-27 01:36:04] 2025-11-27 06:35:34,375 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-27 01:36:04] 2025-11-27 06:35:34,395 | INFO     | sufficient remaining disk space (17472421888 B)
[2025-11-27 01:36:04] 2025-11-27 06:35:34,396 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 01:36:04] 2025-11-27 06:35:34,396 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 01:36:04] 2025-11-27 06:35:34,396 | INFO     | update_server=False
[2025-11-27 01:36:04] 2025-11-27 06:35:34,396 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 01:36:04] 2025-11-27 06:35:34,397 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 01:36:04] 2025-11-27 06:35:34,397 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 01:36:04] 2025-11-27 06:35:34,397 | INFO     | aborting loop
[2025-11-27 01:36:04] 2025-11-27 06:35:35,108 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 01:36:04] 2025-11-27 06:35:35,123 | INFO     | all job control threads have been joined
[2025-11-27 01:36:04] 2025-11-27 06:35:35,398 | INFO     | [job] queue monitor thread has finished
[2025-11-27 01:36:04] 2025-11-27 06:35:35,402 | INFO     | [job] retrieve thread has finished
[2025-11-27 01:36:04] 2025-11-27 06:35:35,403 | INFO     | [job] job monitor thread has finished
[2025-11-27 01:36:04] 2025-11-27 06:35:35,460 | INFO     | all data control threads have been joined
[2025-11-27 01:36:04] 2025-11-27 06:35:35,469 | INFO     | [payload] failed_post thread has finished
[2025-11-27 01:36:04] 2025-11-27 06:35:35,690 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 01:36:04] 2025-11-27 06:35:35,859 | INFO     | all payload control threads have been joined
[2025-11-27 01:36:04] 2025-11-27 06:35:35,973 | INFO     | [job] validate thread has finished
[2025-11-27 01:36:04] 2025-11-27 06:35:36,074 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 01:36:04] 2025-11-27 06:35:36,097 | INFO     | [data] copytool_in thread has finished
[2025-11-27 01:36:04] 2025-11-27 06:35:36,128 | INFO     | [job] control thread has finished
[2025-11-27 01:36:04] 2025-11-27 06:35:36,181 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 01:36:04] 2025-11-27 06:35:36,195 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 01:36:04] 2025-11-27 06:35:36,244 | INFO     | [payload] validate_post thread has finished
[2025-11-27 01:36:04] 2025-11-27 06:35:36,318 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 01:36:04] 2025-11-27 06:35:36,465 | INFO     | [data] control thread has finished
[2025-11-27 01:36:04] 2025-11-27 06:35:36,862 | INFO     | [payload] control thread has finished
[2025-11-27 01:36:04] 2025-11-27 06:35:37,114 | INFO     | [data] copytool_out thread has finished
[2025-11-27 01:36:04] 2025-11-27 06:35:40,197 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 01:36:04] 2025-11-27 06:35:51,940 | INFO     | [monitor] cgroup control has ended
[2025-11-27 01:36:04] 2025-11-27 06:35:51,995 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139829507041088)>', '<ExcThread(monitor, started 139828691724032)>']
[2025-11-27 01:36:04] 2025-11-27 06:35:57,019 | INFO     | all workflow threads have been joined
[2025-11-27 01:36:04] 2025-11-27 06:35:57,019 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 01:36:04] 2025-11-27 06:35:57,020 | INFO     | traces error code: 0
[2025-11-27 01:36:04] 2025-11-27 06:35:57,020 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 01:36:04] 2025-11-27 06:36:04,300 | INFO     | PID=25453 has CPU usage=6.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-27 01:36:04] 2025-11-27 06:36:04,301 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 01:36:04] 2025-11-27 06:36:04,301 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 01:36:04] 2025-11-27 06:36:04,301 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 01:36:04] 2025-11-27 06:36:04,301 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 01:36:04] 2025-11-27 06:36:04,301 | INFO     | [monitor] control thread has ended
[2025-11-27 01:36:04] 2025-11-27 06:36:04,419 [wrapper] ==== pilot stdout END ====
[2025-11-27 01:36:04] 2025-11-27 06:36:04,423 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 01:36:04] 2025-11-27 06:36:04,428 [wrapper] pilotpid: 25453
[2025-11-27 01:36:04] 2025-11-27 06:36:04,432 [wrapper] Pilot exit status: 0
[2025-11-27 01:36:04] 2025-11-27 06:36:04,447 [wrapper] pandaids: 6897881004 6897881004
[2025-11-27 01:36:04] 2025-11-27 06:36:04,492 [wrapper] cleanup supervisor_pilot 11957 25454
[2025-11-27 01:36:04] 2025-11-27 06:36:04,497 [wrapper] Test setup, not cleaning
[2025-11-27 01:36:04] 2025-11-27 06:36:04,502 [wrapper] apfmon messages muted
[2025-11-27 01:36:04] 2025-11-27 06:36:04,507 [wrapper] ==== wrapper stdout END ====
[2025-11-27 01:36:04] 2025-11-27 06:36:04,512 [wrapper] ==== wrapper stderr END ====
[2025-11-27 01:36:04]  *** Error codes and diagnostics ***
[2025-11-27 01:36:04]     "exeErrorCode": 0,
[2025-11-27 01:36:04]     "exeErrorDiag": "",
[2025-11-27 01:36:04]     "pilotErrorCode": 0,
[2025-11-27 01:36:04]     "pilotErrorDiag": "",
[2025-11-27 01:36:04]  *** Listing of results directory ***
[2025-11-27 01:36:04] total 1713520
[2025-11-27 01:36:04] drwx------ 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-27 01:36:04] -rw-r--r-- 1 boincer umatlas    576529 Nov 25 20:44 pilot3.tar.gz
[2025-11-27 01:36:04] -rwx------ 1 boincer umatlas     36292 Nov 25 20:52 runpilot2-wrapper.sh
[2025-11-27 01:36:04] -rw-r--r-- 1 boincer umatlas      5112 Nov 25 20:52 queuedata.json
[2025-11-27 01:36:04] -rw-r--r-- 1 boincer umatlas       100 Nov 26 08:49 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 01:36:04] -rwxr-xr-x 1 boincer umatlas      7986 Nov 26 08:49 run_atlas
[2025-11-27 01:36:04] -rw-r--r-- 1 boincer umatlas       105 Nov 26 08:49 job.xml
[2025-11-27 01:36:04] -rw-r--r-- 3 boincer umatlas 408757829 Nov 26 08:49 EVNT.47483658._002356.pool.root.1
[2025-11-27 01:36:04] -rw-r--r-- 3 boincer umatlas 408757829 Nov 26 08:49 ATLAS.root_0
[2025-11-27 01:36:04] drwxrwx--x 2 boincer umatlas      4096 Nov 26 08:49 shared
[2025-11-27 01:36:04] -rw-r--r-- 2 boincer umatlas    590100 Nov 26 08:49 input.tar.gz
[2025-11-27 01:36:04] -rw-r--r-- 2 boincer umatlas     15847 Nov 26 08:49 start_atlas.sh
[2025-11-27 01:36:04] -rw-r--r-- 1 boincer umatlas         0 Nov 26 08:49 boinc_lockfile
[2025-11-27 01:36:04] -rw-r--r-- 1 boincer umatlas      2785 Nov 26 12:46 pandaJob.out
[2025-11-27 01:36:04] -rw------- 1 boincer umatlas        57 Nov 26 12:46 setup.sh.local
[2025-11-27 01:36:04] -rw------- 1 boincer umatlas    991530 Nov 26 12:46 agis_schedconf.cvmfs.json
[2025-11-27 01:36:04] -rw-r--r-- 1 boincer umatlas       532 Nov 27 01:21 boinc_task_state.xml
[2025-11-27 01:36:04] -rw-r--r-- 1 boincer umatlas      5912 Nov 27 01:28 init_data.xml
[2025-11-27 01:36:04] -rw------- 1 boincer umatlas 916494854 Nov 27 01:34 HITS.47556161._003388.pool.root.1
[2025-11-27 01:36:04] -rw------- 1 boincer umatlas      1061 Nov 27 01:35 memory_monitor_summary.json
[2025-11-27 01:36:04] -rw------- 1 boincer umatlas   1516240 Nov 27 01:35 agis_ddmendpoints.agis.ALL.json
[2025-11-27 01:36:04] -rw------- 1 boincer umatlas   2000124 Nov 27 01:35 log.47556161._003388.job.log.tgz.1
[2025-11-27 01:36:04] -rw------- 1 boincer umatlas      8663 Nov 27 01:35 heartbeat.json
[2025-11-27 01:36:04] -rw-r--r-- 1 boincer umatlas        29 Nov 27 01:35 wrapper_checkpoint.txt
[2025-11-27 01:36:04] -rw-r--r-- 1 boincer umatlas      8192 Nov 27 01:35 boinc_mmap_file
[2025-11-27 01:36:04] -rw------- 1 boincer umatlas        96 Nov 27 01:36 pilot_heartbeat.json
[2025-11-27 01:36:04] -rw------- 1 boincer umatlas       745 Nov 27 01:36 pilotlog.txt
[2025-11-27 01:36:04] -rw------- 1 boincer umatlas   6352439 Nov 27 01:36 log.47556161._003388.job.log.1
[2025-11-27 01:36:04] -rw------- 1 boincer umatlas       353 Nov 27 01:36 output.list
[2025-11-27 01:36:04] -rw-r--r-- 1 boincer umatlas       620 Nov 27 01:36 runtime_log
[2025-11-27 01:36:04] -rw------- 1 boincer umatlas   8376320 Nov 27 01:36 result.tar.gz
[2025-11-27 01:36:04] -rw-r--r-- 1 boincer umatlas      9423 Nov 27 01:36 runtime_log.err
[2025-11-27 01:36:04] -rw------- 1 boincer umatlas       793 Nov 27 01:36 IHTNDmItJi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmHgMKDmBvzFpm.diag
[2025-11-27 01:36:04] -rw-r--r-- 1 boincer umatlas     23448 Nov 27 01:36 stderr.txt
[2025-11-27 01:36:04] HITS file was successfully produced:
[2025-11-27 01:36:04] -rw------- 1 boincer umatlas 916494854 Nov 27 01:34 shared/HITS.pool.root.1
[2025-11-27 01:36:04]  *** Contents of shared directory: ***
[2025-11-27 01:36:04] total 1302980
[2025-11-27 01:36:04] -rw-r--r-- 3 boincer umatlas 408757829 Nov 26 08:49 ATLAS.root_0
[2025-11-27 01:36:04] -rw-r--r-- 2 boincer umatlas    590100 Nov 26 08:49 input.tar.gz
[2025-11-27 01:36:04] -rw-r--r-- 2 boincer umatlas     15847 Nov 26 08:49 start_atlas.sh
[2025-11-27 01:36:04] -rw------- 1 boincer umatlas 916494854 Nov 27 01:34 HITS.pool.root.1
[2025-11-27 01:36:04] -rw------- 1 boincer umatlas   8376320 Nov 27 01:36 result.tar.gz
01:36:05 (21295): run_atlas exited; CPU time 344729.224502
01:36:05 (21295): called boinc_finish(0)

</stderr_txt>
]]>

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