Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
06:03:17 (1362633): wrapper (7.7.26015): starting
06:03:17 (1362633): wrapper: running run_atlas (--nthreads 12)
[2025-11-26 06:03:17] Arguments: --nthreads 12
[2025-11-26 06:03:17] Threads: 12
[2025-11-26 06:03:17] Checking for CVMFS
[2025-11-26 06:03:18] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 06:03:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 06:03:19] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 06:03:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 06:03:20] 2.11.5.0 3590583 28437 176800 153323 3 357 40796710 45568001 38010 130560 0 273513856 99.799 162581069 29071 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.163:3129 1
[2025-11-26 06:03:20] CVMFS is ok
[2025-11-26 06:03:20] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 06:03:20] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 06:03:20] Further information can be found at the LHC@home message board.
[2025-11-26 06:03:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 06:03:20] Checking for apptainer binary...
[2025-11-26 06:03:20] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 06:03:20] Running /usr/bin/apptainer --version
[2025-11-26 06:03:20] apptainer version 1.4.1-1.el9
[2025-11-26 06:03:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 06:03:21] wns0047.triumf.lcg
[2025-11-26 06:03:21] apptainer works
[2025-11-26 06:03:21] Set ATHENA_PROC_NUMBER=12
[2025-11-26 06:03:21] Set ATHENA_CORE_NUMBER=12
[2025-11-26 06:03:21] Starting ATLAS job with PandaID=6897880995
[2025-11-26 06:03:21] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 06:11:31]  *** The last 200 lines of the pilot log: ***
[2025-11-26 06:11:31] 2025-11-26 14:10:56,577 | WARNING  | wrong length of table data, x=[1764165926.0, 1764165987.0, 1764166048.0, 1764166109.0], y=[841.0, 261073.0, 862500.0, 254056.0] (must be same and length>=4)
[2025-11-26 06:11:31] 2025-11-26 14:10:56,577 | INFO     | could have reported an average CPU frequency of 2701 MHz (4 samples)
[2025-11-26 06:11:31] 2025-11-26 14:10:56,577 | INFO     | ..............................
[2025-11-26 06:11:31] 2025-11-26 14:10:56,577 | INFO     | . Timing measurements:
[2025-11-26 06:11:31] 2025-11-26 14:10:56,577 | INFO     | . get job = 0 s
[2025-11-26 06:11:31] 2025-11-26 14:10:56,577 | INFO     | . initial setup = 4 s
[2025-11-26 06:11:31] 2025-11-26 14:10:56,577 | INFO     | . payload setup = 19 s
[2025-11-26 06:11:31] 2025-11-26 14:10:56,578 | INFO     | . stage-in = 0 s
[2025-11-26 06:11:31] 2025-11-26 14:10:56,578 | INFO     | . payload execution = 201 s
[2025-11-26 06:11:31] 2025-11-26 14:10:56,578 | INFO     | . stage-out = 1 s
[2025-11-26 06:11:31] 2025-11-26 14:10:56,578 | INFO     | . log creation = 0 s
[2025-11-26 06:11:31] 2025-11-26 14:10:56,578 | INFO     | ..............................
[2025-11-26 06:11:31] 2025-11-26 14:10:56,578 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-26 06:11:31] 2025-11-26 14:10:56,578 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6897880995/pilotlog.txt
[2025-11-26 06:11:31] 2025-11-26 14:10:56,701 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-26 06:11:31] - Log from pilotlog.txt -
[2025-11-26 06:11:31] 2025-11-26 14:10:56,553 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6897880995/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 06:11:31] 2025-11-26 14:10:56,576 | INFO     | extracted standard info from prmon json
[2025-11-26 06:11:31] 2025-11-26 14:10:56,576 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 06:11:31] 2025-11-26 14:10:56,576 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 06:11:31] 2025-11-26 14:10:56,576 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-26 06:11:31] 2025-11-26 14:10:56,576 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-26 06:11:31] 2025-11-26 14:10:56,577 | WARNING  | wrong length of table data, x=[1764165926.0, 1764165987.0, 1764166048.0, 1764166109.0], y=[841.0, 261073.0, 862500.0, 254056.0] (must be same and length>=4)
[2025-11-26 06:11:31] 2025-11-26 14:10:56,577 | INFO     | could have reported an average CPU frequency of 2701 MHz (4 samples)
[2025-11-26 06:11:31] 2025-11-26 14:10:56,577 | INFO     | ..............................
[2025-11-26 06:11:31] 2025-11-26 14:10:56,577 | INFO     | . Timing measurements:
[2025-11-26 06:11:31] 2025-11-26 14:10:56,577 | INFO     | . get job = 0 s
[2025-11-26 06:11:31] 2025-11-26 14:10:56,577 | INFO     | . initial setup = 4 s
[2025-11-26 06:11:31] 2025-11-26 14:10:56,577 | INFO     | . payload setup = 19 s
[2025-11-26 06:11:31] 2025-11-26 14:10:56,578 | INFO     | . stage-in = 0 s
[2025-11-26 06:11:31] 2025-11-26 14:10:56,578 | INFO     | . payload execution = 201 s
[2025-11-26 06:11:31] 2025-11-26 14:10:56,578 | INFO     | . stage-out = 1 s
[2025-11-26 06:11:31] 2025-11-26 14:10:56,578 | INFO     | . log creation = 0 s
[2025-11-26 06:11:31] 2025-11-26 14:10:56,578 | INFO     | ..............................
[2025-11-26 06:11:31] 2025-11-26 14:10:56,578 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-26 06:11:31] 2025-11-26 14:10:56,578 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6897880995/pilotlog.txt
[2025-11-26 06:11:31] 2025-11-26 14:10:56,702 | WARNING  | 
[2025-11-26 06:11:31] [begin log extracts]
[2025-11-26 06:11:31] - Log from pilotlog.txt -
[2025-11-26 06:11:31] 2025-11-26 14:10:56,553 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6897880995/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 06:11:31] 2025-11-26 14:10:56,576 | INFO     | extracted standard info from prmon json
[2025-11-26 06:11:31] 2025-11-26 14:10:56,576 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 06:11:31] 2025-11-26 14:10:56,576 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 06:11:31] 2025-11-26 14:10:56,576 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-26 06:11:31] 2025-11-26 14:10:56,576 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-26 06:11:31] 2025-11-26 14:10:56,577 | WARNING  | wrong length of table data, x=[1764165926.0, 1764165987.0, 1764166048.0, 1764166109.0], y=[841.0, 261073.0, 862500.0, 254056.0] (must be same and length>=4)
[2025-11-26 06:11:31] 2025-11-26 14:10:56,577 | INFO     | could have reported an average CPU frequency of 2701 MHz (4 samples)
[2025-11-26 06:11:31] 2025-11-26 14:10:56,577 | INFO     | ..............................
[2025-11-26 06:11:31] 2025-11-26 14:10:56,577 | INFO     | . Timing measurements:
[2025-11-26 06:11:31] 2025-11-26 14:10:56,577 | INFO     | . get job = 0 s
[2025-11-26 06:11:31] 2025-11-26 14:10:56,577 | INFO     | . initial setup = 4 s
[2025-11-26 06:11:31] 2025-11-26 14:10:56,577 | INFO     | . payload setup = 19 s
[2025-11-26 06:11:31] 2025-11-26 14:10:56,578 | INFO     | . stage-in = 0 s
[2025-11-26 06:11:31] 2025-11-26 14:10:56,578 | INFO     | . payload execution = 201 s
[2025-11-26 06:11:31] 2025-11-26 14:10:56,578 | INFO     | . stage-out = 1 s
[2025-11-26 06:11:31] 2025-11-26 14:10:56,578 | INFO     | . log creation = 0 s
[2025-11-26 06:11:31] 2025-11-26 14:10:56,578 | INFO     | ..............................
[2025-11-26 06:11:31] 2025-11-26 14:10:56,578 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-26 06:11:31] 2025-11-26 14:10:56,578 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6897880995/pilotlog.txt
[2025-11-26 06:11:31] [end log extracts]
[2025-11-26 06:11:31] 2025-11-26 14:10:56,702 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-26 06:11:31] 2025-11-26 14:10:56,702 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-26 06:11:31] 2025-11-26 14:10:56,894 | INFO     | time since job start (414s) is within the limit (172800.0s)
[2025-11-26 06:11:31] 2025-11-26 14:10:56,926 | INFO     | 
[2025-11-26 06:11:31] 2025-11-26 14:10:56,926 | INFO     | job summary report
[2025-11-26 06:11:31] 2025-11-26 14:10:56,926 | INFO     | --------------------------------------------------
[2025-11-26 06:11:31] 2025-11-26 14:10:56,926 | INFO     | PanDA job id: 6897880995
[2025-11-26 06:11:31] 2025-11-26 14:10:56,926 | INFO     | task id: 47556161
[2025-11-26 06:11:31] 2025-11-26 14:10:56,926 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-26 06:08:24,233 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-26 06:11:31] 2025-11-26 14:10:56,927 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-26 06:11:31] 2025-11-26 14:10:56,927 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 06:11:31] 2025-11-26 14:10:56,927 | INFO     | pilot state: failed 
[2025-11-26 06:11:31] 2025-11-26 14:10:56,927 | INFO     | transexitcode: 65
[2025-11-26 06:11:31] 2025-11-26 14:10:56,927 | INFO     | exeerrorcode: 65
[2025-11-26 06:11:31] 2025-11-26 14:10:56,927 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-11-26 06:11:31] 2025-11-26 14:10:56,927 | INFO     | exitcode: 65
[2025-11-26 06:11:31] 2025-11-26 14:10:56,927 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-11-26 06:11:31] 2025-11-26 14:10:56,927 | INFO     | cpuconsumptiontime: 42 s
[2025-11-26 06:11:31] 2025-11-26 14:10:56,927 | INFO     | nevents: 0
[2025-11-26 06:11:31] 2025-11-26 14:10:56,927 | INFO     | neventsw: 0
[2025-11-26 06:11:31] 2025-11-26 14:10:56,927 | INFO     | pid: 1373506
[2025-11-26 06:11:31] 2025-11-26 14:10:56,927 | INFO     | pgrp: 1373506
[2025-11-26 06:11:31] 2025-11-26 14:10:56,927 | INFO     | corecount: 12
[2025-11-26 06:11:31] 2025-11-26 14:10:56,927 | INFO     | event service: False
[2025-11-26 06:11:31] 2025-11-26 14:10:56,927 | INFO     | sizes: {0: 2284034, 1: 2284289, 2: 2284289, 13: 2284317, 23: 2284635, 24: 2284663, 224: 2310296, 225: 2310272, 226: 2314590, 228: 2314618, 365: 2314784}
[2025-11-26 06:11:31] 2025-11-26 14:10:56,927 | INFO     | --------------------------------------------------
[2025-11-26 06:11:31] 2025-11-26 14:10:56,927 | INFO     | 
[2025-11-26 06:11:31] 2025-11-26 14:10:56,927 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-26 06:11:31] 2025-11-26 14:10:57,074 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 06:11:31] 2025-11-26 14:10:57,074 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 06:11:31] 2025-11-26 14:10:57,074 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 06:11:31] 2025-11-26 14:10:57,074 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 06:11:31] 2025-11-26 14:10:57,074 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 06:11:31] 2025-11-26 14:10:57,075 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 06:11:31] 2025-11-26 14:10:57,075 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 06:11:31] 2025-11-26 14:10:57,075 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 06:11:31] 2025-11-26 14:10:57,075 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 06:11:31] 2025-11-26 14:10:57,075 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 06:11:31] 2025-11-26 14:10:57,075 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 06:11:31] 2025-11-26 14:10:57,075 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 06:11:31] 2025-11-26 14:10:57,075 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 06:11:31] 2025-11-26 14:10:57,075 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 06:11:31] 2025-11-26 14:10:57,075 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 06:11:31] 2025-11-26 14:10:57,075 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 06:11:31] 2025-11-26 14:10:57,075 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 06:11:31] 2025-11-26 14:10:57,076 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 06:11:31] 2025-11-26 14:10:57,076 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 06:11:31] 2025-11-26 14:10:57,076 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 06:11:31] 2025-11-26 14:10:57,076 | INFO     | job 6897880995 has completed (purged errors)
[2025-11-26 06:11:31] 2025-11-26 14:10:57,076 | INFO     | overall cleanup function is called
[2025-11-26 06:11:31] 2025-11-26 14:10:58,102 | INFO     | --- collectZombieJob: --- 10, [1373506]
[2025-11-26 06:11:31] 2025-11-26 14:10:58,102 | INFO     | zombie collector waiting for pid 1373506
[2025-11-26 06:11:31] 2025-11-26 14:10:58,102 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 06:11:31] 2025-11-26 14:10:58,102 | INFO     | collected zombie processes
[2025-11-26 06:11:31] 2025-11-26 14:10:58,102 | INFO     | will attempt to kill all subprocesses of pid=1373506
[2025-11-26 06:11:31] 2025-11-26 14:10:58,658 | INFO     | process IDs to be killed: [1373506] (in reverse order)
[2025-11-26 06:11:31] 2025-11-26 14:10:59,240 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 06:11:31] 2025-11-26 14:10:59,240 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 06:11:31] 2025-11-26 14:10:59,277 | INFO     | did not find any defunct processes belonging to 1373506
[2025-11-26 06:11:31] 2025-11-26 14:10:59,311 | INFO     | did not find any defunct processes belonging to 1373506
[2025-11-26 06:11:31] 2025-11-26 14:10:59,326 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 06:11:31] 2025-11-26 14:10:59,326 | INFO     | ready for new job
[2025-11-26 06:11:31] 2025-11-26 14:10:59,326 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 06:11:31] 2025-11-26 14:10:59,328 | INFO     | ***************************************
[2025-11-26 06:11:31] 2025-11-26 14:10:59,328 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 06:11:31] 2025-11-26 14:10:59,328 | INFO     | ***************************************
[2025-11-26 06:11:31] 2025-11-26 14:10:59,328 | INFO     | 
[2025-11-26 06:11:31] 2025-11-26 14:10:59,330 | INFO     | architecture information:
[2025-11-26 06:11:31] 2025-11-26 14:10:59,345 | INFO     | executing command: cat /etc/os-release
[2025-11-26 06:11:31] 2025-11-26 14:10:59,392 | INFO     | cat /etc/os-release:
[2025-11-26 06:11:31] NAME="CentOS Linux"
[2025-11-26 06:11:31] VERSION="7 (Core)"
[2025-11-26 06:11:31] ID="centos"
[2025-11-26 06:11:31] ID_LIKE="rhel fedora"
[2025-11-26 06:11:31] VERSION_ID="7"
[2025-11-26 06:11:31] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 06:11:31] ANSI_COLOR="0;31"
[2025-11-26 06:11:31] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 06:11:31] HOME_URL="https://www.centos.org/"
[2025-11-26 06:11:31] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 06:11:31] 
[2025-11-26 06:11:31] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 06:11:31] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 06:11:31] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 06:11:31] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 06:11:31] 
[2025-11-26 06:11:31] 2025-11-26 14:10:59,392 | INFO     | ***************************************
[2025-11-26 06:11:31] 2025-11-26 14:10:59,896 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-26 06:11:31] 2025-11-26 14:10:59,923 | INFO     | sufficient remaining disk space (1682715967488 B)
[2025-11-26 06:11:31] 2025-11-26 14:10:59,923 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 06:11:31] 2025-11-26 14:10:59,924 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 06:11:31] 2025-11-26 14:10:59,924 | INFO     | update_server=False
[2025-11-26 06:11:31] 2025-11-26 14:10:59,924 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 06:11:31] 2025-11-26 14:10:59,924 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 06:11:31] 2025-11-26 14:10:59,924 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 06:11:31] 2025-11-26 14:10:59,924 | INFO     | aborting loop
[2025-11-26 06:11:31] 2025-11-26 14:11:00,191 | INFO     | all job control threads have been joined
[2025-11-26 06:11:31] 2025-11-26 14:11:00,196 | INFO     | all payload control threads have been joined
[2025-11-26 06:11:31] 2025-11-26 14:11:00,706 | INFO     | all data control threads have been joined
[2025-11-26 06:11:31] 2025-11-26 14:11:00,930 | INFO     | [job] job monitor thread has finished
[2025-11-26 06:11:31] 2025-11-26 14:11:00,930 | INFO     | [job] retrieve thread has finished
[2025-11-26 06:11:31] 2025-11-26 14:11:01,039 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 06:11:31] 2025-11-26 14:11:01,197 | INFO     | [job] control thread has finished
[2025-11-26 06:11:31] 2025-11-26 14:11:01,201 | INFO     | [payload] control thread has finished
[2025-11-26 06:11:31] 2025-11-26 14:11:01,261 | INFO     | [payload] validate_post thread has finished
[2025-11-26 06:11:31] 2025-11-26 14:11:01,437 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 06:11:31] 2025-11-26 14:11:01,713 | INFO     | [data] control thread has finished
[2025-11-26 06:11:31] 2025-11-26 14:11:01,725 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 06:11:31] 2025-11-26 14:11:01,725 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 06:11:31] 2025-11-26 14:11:01,725 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 06:11:31] 2025-11-26 14:11:01,931 | INFO     | [data] copytool_out thread has finished
[2025-11-26 06:11:31] 2025-11-26 14:11:01,940 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 06:11:31] 2025-11-26 14:11:01,994 | INFO     | [data] copytool_in thread has finished
[2025-11-26 06:11:31] 2025-11-26 14:11:02,072 | INFO     | [monitor] cgroup control has ended
[2025-11-26 06:11:31] 2025-11-26 14:11:02,244 | INFO     | [payload] failed_post thread has finished
[2025-11-26 06:11:31] 2025-11-26 14:11:02,358 | INFO     | [job] validate thread has finished
[2025-11-26 06:11:31] 2025-11-26 14:11:02,946 | INFO     | [job] queue monitor thread has finished
[2025-11-26 06:11:31] 2025-11-26 14:11:05,448 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 06:11:31] 2025-11-26 14:11:06,199 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139665945339712)>', '<ExcThread(monitor, started 139665415857920)>']
[2025-11-26 06:11:31] 2025-11-26 14:11:11,225 | INFO     | all workflow threads have been joined
[2025-11-26 06:11:31] 2025-11-26 14:11:11,225 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 06:11:31] 2025-11-26 14:11:11,225 | INFO     | traces error code: 0
[2025-11-26 06:11:31] 2025-11-26 14:11:11,225 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 06:11:31] 2025-11-26 14:11:30,349 | INFO     | PID=1366507 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 06:11:31] 2025-11-26 14:11:30,349 | INFO     | .. there are 35 such processes running
[2025-11-26 06:11:31] 2025-11-26 14:11:30,350 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 06:11:31] 2025-11-26 14:11:30,350 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 06:11:31] 2025-11-26 14:11:30,350 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 06:11:31] 2025-11-26 14:11:30,350 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 06:11:31] 2025-11-26 14:11:30,350 | INFO     | [monitor] control thread has ended
[2025-11-26 06:11:31] 2025-11-26 14:11:30,467 [wrapper] ==== pilot stdout END ====
[2025-11-26 06:11:31] 2025-11-26 14:11:30,472 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 06:11:31] 2025-11-26 14:11:30,484 [wrapper] pilotpid: 1366507
[2025-11-26 06:11:31] 2025-11-26 14:11:30,493 [wrapper] Pilot exit status: 0
[2025-11-26 06:11:31] 2025-11-26 14:11:30,565 [wrapper] pandaids: 6897880995
[2025-11-26 06:11:31] 2025-11-26 14:11:31,024 [wrapper] cleanup supervisor_pilot 1366513 1366508
[2025-11-26 06:11:31] 2025-11-26 14:11:31,033 [wrapper] Test setup, not cleaning
[2025-11-26 06:11:31] 2025-11-26 14:11:31,056 [wrapper] apfmon messages muted
[2025-11-26 06:11:31] 2025-11-26 14:11:31,072 [wrapper] ==== wrapper stdout END ====
[2025-11-26 06:11:31] 2025-11-26 14:11:31,087 [wrapper] ==== wrapper stderr END ====
[2025-11-26 06:11:31]  *** Error codes and diagnostics ***
[2025-11-26 06:11:31]     "exeErrorCode": 65,
[2025-11-26 06:11:31]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-11-26 06:11:31]     "pilotErrorCode": 1305,
[2025-11-26 06:11:31]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-11-26 06:11:31]  *** Listing of results directory ***
[2025-11-26 06:11:31] total 403028
[2025-11-26 06:11:31] -rw-r--r--. 1 boinc boinc    576529 Nov 25 17:44 pilot3.tar.gz
[2025-11-26 06:11:31] -rw-r--r--. 1 boinc boinc      5112 Nov 25 17:46 queuedata.json
[2025-11-26 06:11:31] -rwx------. 1 boinc boinc     36292 Nov 25 17:49 runpilot2-wrapper.sh
[2025-11-26 06:11:31] -rw-r--r--. 1 boinc boinc       100 Nov 26 06:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 06:11:31] -rwxr-xr-x. 1 boinc boinc      7986 Nov 26 06:03 run_atlas
[2025-11-26 06:11:31] -rw-r--r--. 1 boinc boinc       105 Nov 26 06:03 job.xml
[2025-11-26 06:11:31] -rw-r--r--. 1 boinc boinc      6595 Nov 26 06:03 init_data.xml
[2025-11-26 06:11:31] -rw-r--r--. 2 boinc boinc 408446726 Nov 26 06:03 EVNT.47483658._002355.pool.root.1
[2025-11-26 06:11:31] -rw-r--r--. 2 boinc boinc     15847 Nov 26 06:03 start_atlas.sh
[2025-11-26 06:11:31] drwxrwx--x. 2 boinc boinc      4096 Nov 26 06:03 shared
[2025-11-26 06:11:31] -rw-r--r--. 2 boinc boinc    590099 Nov 26 06:03 input.tar.gz
[2025-11-26 06:11:31] -rw-r--r--. 1 boinc boinc         0 Nov 26 06:03 boinc_lockfile
[2025-11-26 06:11:31] -rw-r--r--. 1 boinc boinc      2785 Nov 26 06:03 pandaJob.out
[2025-11-26 06:11:31] -rw-------. 1 boinc boinc    991830 Nov 26 06:03 agis_schedconf.cvmfs.json
[2025-11-26 06:11:31] -rw-------. 1 boinc boinc   1516240 Nov 26 06:04 agis_ddmendpoints.agis.ALL.json
[2025-11-26 06:11:31] drwx------. 5 boinc boinc      4096 Nov 26 06:04 pilot3
[2025-11-26 06:11:31] -rw-r--r--. 1 boinc boinc       524 Nov 26 06:08 boinc_task_state.xml
[2025-11-26 06:11:31] -rw-------. 1 boinc boinc       995 Nov 26 06:08 memory_monitor_summary.json
[2025-11-26 06:11:31] -rw-------. 1 boinc boinc     51028 Nov 26 06:08 log.47556161._003379.job.log.tgz.1
[2025-11-26 06:11:31] -rw-------. 1 boinc boinc     10340 Nov 26 06:10 heartbeat.json
[2025-11-26 06:11:31] -rw-r--r--. 1 boinc boinc        23 Nov 26 06:11 wrapper_checkpoint.txt
[2025-11-26 06:11:31] -rw-r--r--. 1 boinc boinc      8192 Nov 26 06:11 boinc_mmap_file
[2025-11-26 06:11:31] -rw-------. 1 boinc boinc       823 Nov 26 06:11 pilotlog.txt
[2025-11-26 06:11:31] -rw-------. 1 boinc boinc        95 Nov 26 06:11 pilot_heartbeat.json
[2025-11-26 06:11:31] -rw-------. 1 boinc boinc    117893 Nov 26 06:11 log.47556161._003379.job.log.1
[2025-11-26 06:11:31] -rw-------. 1 boinc boinc       186 Nov 26 06:11 output.list
[2025-11-26 06:11:31] -rw-r--r--. 1 boinc boinc       620 Nov 26 06:11 runtime_log
[2025-11-26 06:11:31] -rw-------. 1 boinc boinc    194560 Nov 26 06:11 result.tar.gz
[2025-11-26 06:11:31] -rw-------. 1 boinc boinc       645 Nov 26 06:11 XrPKDmDqJi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmDlJKDm6OW1ln.diag
[2025-11-26 06:11:31] -rw-r--r--. 1 boinc boinc      8636 Nov 26 06:11 runtime_log.err
[2025-11-26 06:11:31] -rw-r--r--. 1 boinc boinc     22686 Nov 26 06:11 stderr.txt
[2025-11-26 06:11:31] No HITS result produced
[2025-11-26 06:11:31]  *** Contents of shared directory: ***
[2025-11-26 06:11:31] total 399668
[2025-11-26 06:11:31] -rw-r--r--. 2 boinc boinc 408446726 Nov 26 06:03 ATLAS.root_0
[2025-11-26 06:11:31] -rw-r--r--. 2 boinc boinc     15847 Nov 26 06:03 start_atlas.sh
[2025-11-26 06:11:31] -rw-r--r--. 2 boinc boinc    590099 Nov 26 06:03 input.tar.gz
[2025-11-26 06:11:31] -rw-------. 1 boinc boinc    194560 Nov 26 06:11 result.tar.gz
06:11:32 (1362633): run_atlas exited; CPU time 49.670659
06:11:32 (1362633): called boinc_finish(0)

</stderr_txt>
]]>

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