Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
08:48:44 (808744): wrapper (7.7.26015): starting
08:48:44 (808744): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 08:48:44] Arguments: --nthreads 8
[2025-11-26 08:48:44] Threads: 8
[2025-11-26 08:48:44] Checking for CVMFS
[2025-11-26 08:48:44] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 08:48:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 08:48:44] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 08:48:44] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 08:48:44] 2.13.3.0 11754 30085 151544 153323 2 594 29913205 32935936 16857 16776704 0 161143016 99.578 167849521 6962 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 08:48:44] CVMFS is ok
[2025-11-26 08:48:44] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 08:48:44] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 08:48:44] Further information can be found at the LHC@home message board.
[2025-11-26 08:48:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 08:48:44] Checking for apptainer binary...
[2025-11-26 08:48:44] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 08:48:44] Running /usr/bin/apptainer --version
[2025-11-26 08:48:44] apptainer version 1.4.4-1.el9
[2025-11-26 08:48:44] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 08:48:45] c7-2-38.aglt2.org
[2025-11-26 08:48:45] apptainer works
[2025-11-26 08:48:45] Set ATHENA_PROC_NUMBER=8
[2025-11-26 08:48:45] Set ATHENA_CORE_NUMBER=8
[2025-11-26 08:48:45] Starting ATLAS job with PandaID=6896990436
[2025-11-26 08:48:45] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 14:09:16]  *** The last 200 lines of the pilot log: ***
[2025-11-27 14:09:16] 2025-11-27 19:08:10,261 | INFO     | fitting pss+swap vs Time
[2025-11-27 14:09:16] 2025-11-27 19:08:10,265 | INFO     | sum of square deviations: 1605516225783.1436
[2025-11-27 14:09:16] 2025-11-27 19:08:10,576 | INFO     | sum of deviations: 8100971224656.976
[2025-11-27 14:09:16] 2025-11-27 19:08:10,576 | INFO     | mean x: 1764217702.4121387
[2025-11-27 14:09:16] 2025-11-27 19:08:10,576 | INFO     | mean y: 2881757.220231214
[2025-11-27 14:09:16] 2025-11-27 19:08:10,577 | INFO     | intersect: -8898851287.738466
[2025-11-27 14:09:16] 2025-11-27 19:08:10,578 | INFO     | chi2: 7.488586579438558
[2025-11-27 14:09:16] 2025-11-27 19:08:10,580 | INFO     | sum of square deviations: 1591636599155.1455
[2025-11-27 14:09:16] 2025-11-27 19:08:10,637 | INFO     | sum of deviations: 8719431112530.633
[2025-11-27 14:09:16] 2025-11-27 19:08:10,638 | INFO     | mean x: 1764217549.9171014
[2025-11-27 14:09:16] 2025-11-27 19:08:10,638 | INFO     | mean y: 2888551.277101449
[2025-11-27 14:09:16] 2025-11-27 19:08:10,638 | INFO     | intersect: -9661989349.988272
[2025-11-27 14:09:16] 2025-11-27 19:08:10,639 | INFO     | chi2: 3.9483728007698726
[2025-11-27 14:09:16] 2025-11-27 19:08:10,639 | INFO     | current chi2=3.9483728007698726 (change=47.27479266099513 %)
[2025-11-27 14:09:16] 2025-11-27 19:08:10,641 | INFO     | sum of square deviations: 1577837206833.5605
[2025-11-27 14:09:16] 2025-11-27 19:08:10,697 | INFO     | sum of deviations: 8953113826135.463
[2025-11-27 14:09:16] 2025-11-27 19:08:10,697 | INFO     | mean x: 1764217397.422093
[2025-11-27 14:09:16] 2025-11-27 19:08:10,697 | INFO     | mean y: 2891129.772093023
[2025-11-27 14:09:16] 2025-11-27 19:08:10,697 | INFO     | intersect: -10007798886.130566
[2025-11-27 14:09:16] 2025-11-27 19:08:10,699 | INFO     | chi2: 2.8721579367913637
[2025-11-27 14:09:16] 2025-11-27 19:08:10,699 | INFO     | current chi2=2.8721579367913637 (change=27.257174493975427 %)
[2025-11-27 14:09:16] 2025-11-27 19:08:10,700 | INFO     | sum of square deviations: 1564117396099.296
[2025-11-27 14:09:16] 2025-11-27 19:08:10,745 | INFO     | monitor loop #5852: job 0:6896990436 is in state 'finished'
[2025-11-27 14:09:16] 2025-11-27 19:08:10,746 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 14:09:16] 2025-11-27 19:08:10,799 | INFO     | sum of deviations: 8893160772863.674
[2025-11-27 14:09:16] 2025-11-27 19:08:10,799 | INFO     | mean x: 1764217244.9247813
[2025-11-27 14:09:16] 2025-11-27 19:08:10,799 | INFO     | mean y: 2890463.113702624
[2025-11-27 14:09:16] 2025-11-27 19:08:10,800 | INFO     | intersect: -10027985503.42319
[2025-11-27 14:09:16] 2025-11-27 19:08:10,805 | INFO     | chi2: 2.86724621186379
[2025-11-27 14:09:16] 2025-11-27 19:08:10,805 | INFO     | current chi2=2.86724621186379 (change=0.17101165867852655 %)
[2025-11-27 14:09:16] 2025-11-27 19:08:10,805 | INFO     | right removable region: 1714
[2025-11-27 14:09:16] 2025-11-27 19:08:10,807 | INFO     | sum of square deviations: 1591634686802.312
[2025-11-27 14:09:16] 2025-11-27 19:08:10,930 | INFO     | sum of deviations: 7587377503909.859
[2025-11-27 14:09:16] 2025-11-27 19:08:10,930 | INFO     | mean x: 1764217854.9176812
[2025-11-27 14:09:16] 2025-11-27 19:08:10,930 | INFO     | mean y: 2887396.1257971013
[2025-11-27 14:09:16] 2025-11-27 19:08:10,931 | INFO     | intersect: -8407200028.703676
[2025-11-27 14:09:16] 2025-11-27 19:08:10,932 | INFO     | chi2: 5.012592064064059
[2025-11-27 14:09:16] 2025-11-27 19:08:10,932 | INFO     | current chi2=5.012592064064059 (change=33.06357600475432 %)
[2025-11-27 14:09:16] 2025-11-27 19:08:10,938 | INFO     | sum of square deviations: 1577833381883.8696
[2025-11-27 14:09:16] 2025-11-27 19:08:11,061 | INFO     | sum of deviations: 7427160445675.785
[2025-11-27 14:09:16] 2025-11-27 19:08:11,061 | INFO     | mean x: 1764218007.423256
[2025-11-27 14:09:16] 2025-11-27 19:08:11,061 | INFO     | mean y: 2889166.4604651164
[2025-11-27 14:09:16] 2025-11-27 19:08:11,062 | INFO     | intersect: -8301618998.171179
[2025-11-27 14:09:16] 2025-11-27 19:08:11,063 | INFO     | chi2: 4.926523680738055
[2025-11-27 14:09:16] 2025-11-27 19:08:11,063 | INFO     | current chi2=4.926523680738055 (change=1.7170434423147973 %)
[2025-11-27 14:09:16] 2025-11-27 19:08:11,063 | INFO     | left removable region: 20
[2025-11-27 14:09:16] 2025-11-27 19:08:11,069 | INFO     | sum of square deviations: 1507356701466.8228
[2025-11-27 14:09:16] 2025-11-27 19:08:11,184 | INFO     | sum of deviations: 7935291368184.873
[2025-11-27 14:09:16] 2025-11-27 19:08:11,184 | INFO     | mean x: 1764217824.4474616
[2025-11-27 14:09:16] 2025-11-27 19:08:11,184 | INFO     | mean y: 2900915.588547816
[2025-11-27 14:09:16] 2025-11-27 19:08:11,185 | INFO     | intersect: -9284603800.65593
[2025-11-27 14:09:16] 2025-11-27 19:08:11,190 | INFO     | chi2: 0.19244030417706015
[2025-11-27 14:09:16] 2025-11-27 19:08:11,191 | INFO     | current memory leak: 5.26 B/s (using 1694 data points, chi2=0.19)
[2025-11-27 14:09:16] 2025-11-27 19:08:11,199 | INFO     | could have reported an average CPU frequency of 3125 MHz (61 samples)
[2025-11-27 14:09:16] 2025-11-27 19:08:11,199 | INFO     | ..............................
[2025-11-27 14:09:16] 2025-11-27 19:08:11,199 | INFO     | . Timing measurements:
[2025-11-27 14:09:16] 2025-11-27 19:08:11,199 | INFO     | . get job = 0 s
[2025-11-27 14:09:16] 2025-11-27 19:08:11,199 | INFO     | . initial setup = 2 s
[2025-11-27 14:09:16] 2025-11-27 19:08:11,199 | INFO     | . payload setup = 7 s
[2025-11-27 14:09:16] 2025-11-27 19:08:11,199 | INFO     | . stage-in = 0 s
[2025-11-27 14:09:16] 2025-11-27 19:08:11,200 | INFO     | . payload execution = 105505 s
[2025-11-27 14:09:16] 2025-11-27 19:08:11,200 | INFO     | . stage-out = 7 s
[2025-11-27 14:09:16] 2025-11-27 19:08:11,200 | INFO     | . log creation = 1 s
[2025-11-27 14:09:16] 2025-11-27 19:08:11,200 | INFO     | ..............................
[2025-11-27 14:09:16] 2025-11-27 19:08:11,485 | INFO     | 
[2025-11-27 14:09:16] 2025-11-27 19:08:11,486 | INFO     | job summary report
[2025-11-27 14:09:16] 2025-11-27 19:08:11,486 | INFO     | --------------------------------------------------
[2025-11-27 14:09:16] 2025-11-27 19:08:11,486 | INFO     | PanDA job id: 6896990436
[2025-11-27 14:09:16] 2025-11-27 19:08:11,486 | INFO     | task id: 47556161
[2025-11-27 14:09:16] 2025-11-27 19:08:11,486 | INFO     | errors: (none)
[2025-11-27 14:09:16] 2025-11-27 19:08:11,486 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 14:09:16] 2025-11-27 19:08:11,486 | INFO     | pilot state: finished 
[2025-11-27 14:09:16] 2025-11-27 19:08:11,486 | INFO     | transexitcode: 0
[2025-11-27 14:09:16] 2025-11-27 19:08:11,486 | INFO     | exeerrorcode: 0
[2025-11-27 14:09:16] 2025-11-27 19:08:11,487 | INFO     | exeerrordiag: 
[2025-11-27 14:09:16] 2025-11-27 19:08:11,487 | INFO     | exitcode: 0
[2025-11-27 14:09:16] 2025-11-27 19:08:11,487 | INFO     | exitmsg: OK
[2025-11-27 14:09:16] 2025-11-27 19:08:11,487 | INFO     | cpuconsumptiontime: 209168 s
[2025-11-27 14:09:16] 2025-11-27 19:08:11,487 | INFO     | nevents: 1000
[2025-11-27 14:09:16] 2025-11-27 19:08:11,487 | INFO     | neventsw: 0
[2025-11-27 14:09:16] 2025-11-27 19:08:11,487 | INFO     | pid: 845854
[2025-11-27 14:09:16] 2025-11-27 19:08:11,487 | INFO     | pgrp: 845854
[2025-11-27 14:09:16] 2025-11-27 19:08:11,487 | INFO     | corecount: 8
[2025-11-27 14:09:16] 2025-11-27 19:08:11,487 | INFO     | event service: False
[2025-11-27 14:09:16] 2025-11-27 19:08:11,487 | INFO     | sizes: {0: 2284259, 5: 2284521, 11: 2284577, 105516: 2358348, 105525: 2367342, 105526: 2367398, 105538: 2367772}
[2025-11-27 14:09:16] 2025-11-27 19:08:11,487 | INFO     | --------------------------------------------------
[2025-11-27 14:09:16] 2025-11-27 19:08:11,487 | INFO     | 
[2025-11-27 14:09:16] 2025-11-27 19:08:11,487 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-11-27 14:09:16] 2025-11-27 19:08:11,759 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 14:09:16] 2025-11-27 19:08:11,759 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 14:09:16] 2025-11-27 19:08:11,760 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 14:09:16] 2025-11-27 19:08:11,760 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 14:09:16] 2025-11-27 19:08:11,760 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 14:09:16] 2025-11-27 19:08:11,760 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 14:09:16] 2025-11-27 19:08:11,760 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 14:09:16] 2025-11-27 19:08:11,760 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 14:09:16] 2025-11-27 19:08:11,760 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 14:09:16] 2025-11-27 19:08:11,760 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 14:09:16] 2025-11-27 19:08:11,760 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 14:09:16] 2025-11-27 19:08:11,760 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 14:09:16] 2025-11-27 19:08:11,760 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 14:09:16] 2025-11-27 19:08:11,761 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 14:09:16] 2025-11-27 19:08:11,761 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 14:09:16] 2025-11-27 19:08:11,761 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 14:09:16] 2025-11-27 19:08:11,761 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 14:09:16] 2025-11-27 19:08:11,761 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 14:09:16] 2025-11-27 19:08:11,761 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 14:09:16] 2025-11-27 19:08:11,761 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 14:09:16] 2025-11-27 19:08:11,761 | INFO     | job 6896990436 has completed (purged errors)
[2025-11-27 14:09:16] 2025-11-27 19:08:11,761 | INFO     | overall cleanup function is called
[2025-11-27 14:09:16] 2025-11-27 19:08:12,862 | INFO     | --- collectZombieJob: --- 10, [845854]
[2025-11-27 14:09:16] 2025-11-27 19:08:12,862 | INFO     | zombie collector waiting for pid 845854
[2025-11-27 14:09:16] 2025-11-27 19:08:12,863 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 14:09:16] 2025-11-27 19:08:12,863 | INFO     | collected zombie processes
[2025-11-27 14:09:16] 2025-11-27 19:08:12,863 | INFO     | will attempt to kill all subprocesses of pid=845854
[2025-11-27 14:09:16] 2025-11-27 19:08:14,810 | INFO     | process IDs to be killed: [845854] (in reverse order)
[2025-11-27 14:09:16] 2025-11-27 19:08:15,126 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 14:09:16] 2025-11-27 19:08:15,126 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 14:09:16] 2025-11-27 19:08:15,243 | INFO     | did not find any defunct processes belonging to 845854
[2025-11-27 14:09:16] 2025-11-27 19:08:15,344 | INFO     | did not find any defunct processes belonging to 845854
[2025-11-27 14:09:16] 2025-11-27 19:08:15,368 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 14:09:16] 2025-11-27 19:08:15,369 | INFO     | ready for new job
[2025-11-27 14:09:16] 2025-11-27 19:08:15,369 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 14:09:16] 2025-11-27 19:08:15,409 | INFO     | ***************************************
[2025-11-27 14:09:16] 2025-11-27 19:08:15,409 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 14:09:16] 2025-11-27 19:08:15,409 | INFO     | ***************************************
[2025-11-27 14:09:16] 2025-11-27 19:08:15,409 | INFO     | 
[2025-11-27 14:09:16] 2025-11-27 19:08:15,415 | INFO     | architecture information:
[2025-11-27 14:09:16] 2025-11-27 19:08:15,455 | INFO     | executing command: cat /etc/os-release
[2025-11-27 14:09:16] 2025-11-27 19:08:15,548 | INFO     | cat /etc/os-release:
[2025-11-27 14:09:16] NAME="CentOS Linux"
[2025-11-27 14:09:16] VERSION="7 (Core)"
[2025-11-27 14:09:16] ID="centos"
[2025-11-27 14:09:16] ID_LIKE="rhel fedora"
[2025-11-27 14:09:16] VERSION_ID="7"
[2025-11-27 14:09:16] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 14:09:16] ANSI_COLOR="0;31"
[2025-11-27 14:09:16] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 14:09:16] HOME_URL="https://www.centos.org/"
[2025-11-27 14:09:16] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 14:09:16] 
[2025-11-27 14:09:16] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 14:09:16] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 14:09:16] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 14:09:16] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 14:09:16] 
[2025-11-27 14:09:16] 2025-11-27 19:08:15,549 | INFO     | ***************************************
[2025-11-27 14:09:16] 2025-11-27 19:08:16,053 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-11-27 14:09:16] 2025-11-27 19:08:16,195 | INFO     | sufficient remaining disk space (66072870912 B)
[2025-11-27 14:09:16] 2025-11-27 19:08:16,196 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 14:09:16] 2025-11-27 19:08:16,196 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 14:09:16] 2025-11-27 19:08:16,196 | INFO     | update_server=False
[2025-11-27 14:09:16] 2025-11-27 19:08:16,196 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 14:09:16] 2025-11-27 19:08:16,197 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 14:09:16] 2025-11-27 19:08:16,531 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 14:09:16] 2025-11-27 19:08:16,896 | INFO     | all data control threads have been joined
[2025-11-27 14:09:16] 2025-11-27 19:08:16,904 | INFO     | all job control threads have been joined
[2025-11-27 14:09:16] 2025-11-27 19:08:16,920 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 14:09:16] 2025-11-27 19:08:16,921 | INFO     | aborting loop
[2025-11-27 14:09:16] 2025-11-27 19:08:17,202 | INFO     | [job] retrieve thread has finished
[2025-11-27 14:09:16] 2025-11-27 19:08:17,255 | INFO     | all payload control threads have been joined
[2025-11-27 14:09:16] 2025-11-27 19:08:17,438 | INFO     | [payload] failed_post thread has finished
[2025-11-27 14:09:16] 2025-11-27 19:08:17,537 | INFO     | [job] queue monitor thread has finished
[2025-11-27 14:09:16] 2025-11-27 19:08:17,845 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 14:09:16] 2025-11-27 19:08:17,846 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 14:09:16] 2025-11-27 19:08:17,854 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 14:09:16] 2025-11-27 19:08:17,901 | INFO     | [data] control thread has finished
[2025-11-27 14:09:16] 2025-11-27 19:08:17,913 | INFO     | [job] control thread has finished
[2025-11-27 14:09:16] 2025-11-27 19:08:17,921 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 14:09:16] 2025-11-27 19:08:17,925 | INFO     | [job] job monitor thread has finished
[2025-11-27 14:09:16] 2025-11-27 19:08:17,945 | INFO     | [job] validate thread has finished
[2025-11-27 14:09:16] 2025-11-27 19:08:18,213 | INFO     | [payload] validate_post thread has finished
[2025-11-27 14:09:16] 2025-11-27 19:08:18,214 | INFO     | [data] copytool_out thread has finished
[2025-11-27 14:09:16] 2025-11-27 19:08:18,261 | INFO     | [payload] control thread has finished
[2025-11-27 14:09:16] 2025-11-27 19:08:18,415 | INFO     | [data] copytool_in thread has finished
[2025-11-27 14:09:16] 2025-11-27 19:08:18,434 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 14:09:16] 2025-11-27 19:08:22,452 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 14:09:16] 2025-11-27 19:08:49,689 | INFO     | PID=818010 has CPU usage=4.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-27 14:09:16] 2025-11-27 19:08:49,690 | INFO     | .. there are 19 such processes running
[2025-11-27 14:09:16] 2025-11-27 19:08:49,691 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 14:09:16] 2025-11-27 19:08:49,691 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 14:09:16] 2025-11-27 19:08:49,691 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 14:09:16] 2025-11-27 19:09:08,154 | INFO     | [monitor] cgroup control has ended
[2025-11-27 14:09:16] 2025-11-27 19:09:09,828 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140176150357824)>', '<ExcThread(monitor, started 140175501940480)>']
[2025-11-27 14:09:16] 2025-11-27 19:09:10,055 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 14:09:16] 2025-11-27 19:09:10,056 | INFO     | [monitor] control thread has ended
[2025-11-27 14:09:16] 2025-11-27 19:09:14,855 | INFO     | all workflow threads have been joined
[2025-11-27 14:09:16] 2025-11-27 19:09:14,855 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 14:09:16] 2025-11-27 19:09:14,856 | INFO     | traces error code: 0
[2025-11-27 14:09:16] 2025-11-27 19:09:14,856 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 14:09:16] 2025-11-27 19:09:16,384 [wrapper] ==== pilot stdout END ====
[2025-11-27 14:09:16] 2025-11-27 19:09:16,396 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 14:09:16] 2025-11-27 19:09:16,403 [wrapper] pilotpid: 818010
[2025-11-27 14:09:16] 2025-11-27 19:09:16,407 [wrapper] Pilot exit status: 0
[2025-11-27 14:09:16] 2025-11-27 19:09:16,423 [wrapper] pandaids: 6896990436
[2025-11-27 14:09:16] 2025-11-27 19:09:16,562 [wrapper] cleanup supervisor_pilot 1976183 818011
[2025-11-27 14:09:16] 2025-11-27 19:09:16,568 [wrapper] Test setup, not cleaning
[2025-11-27 14:09:16] 2025-11-27 19:09:16,573 [wrapper] apfmon messages muted
[2025-11-27 14:09:16] 2025-11-27 19:09:16,589 [wrapper] ==== wrapper stdout END ====
[2025-11-27 14:09:16] 2025-11-27 19:09:16,605 [wrapper] ==== wrapper stderr END ====
[2025-11-27 14:09:16]  *** Error codes and diagnostics ***
[2025-11-27 14:09:16]     "exeErrorCode": 0,
[2025-11-27 14:09:16]     "exeErrorDiag": "",
[2025-11-27 14:09:16]     "pilotErrorCode": 0,
[2025-11-27 14:09:16]     "pilotErrorDiag": "",
[2025-11-27 14:09:16]  *** Listing of results directory ***
[2025-11-27 14:09:16] total 1345032
[2025-11-27 14:09:16] -rwx------. 1 boincer umatlas     36292 Nov 25 11:48 runpilot2-wrapper.sh
[2025-11-27 14:09:16] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 11:48 queuedata.json
[2025-11-27 14:09:16] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 11:48 pilot3.tar.gz
[2025-11-27 14:09:16] -rw-r--r--. 1 boincer umatlas       100 Nov 26 08:48 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 14:09:16] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 08:48 run_atlas
[2025-11-27 14:09:16] -rw-r--r--. 1 boincer umatlas       105 Nov 26 08:48 job.xml
[2025-11-27 14:09:16] -rw-r--r--. 2 boincer umatlas 410999326 Nov 26 08:48 EVNT.47483658._002175.pool.root.1
[2025-11-27 14:09:16] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 08:48 start_atlas.sh
[2025-11-27 14:09:16] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 08:48 shared
[2025-11-27 14:09:16] -rw-r--r--. 2 boincer umatlas    590100 Nov 26 08:48 input.tar.gz
[2025-11-27 14:09:16] -rw-r--r--. 1 boincer umatlas         0 Nov 26 08:48 boinc_lockfile
[2025-11-27 14:09:16] -rw-r--r--. 1 boincer umatlas      2783 Nov 26 08:48 pandaJob.out
[2025-11-27 14:09:16] -rw-------. 1 boincer umatlas        57 Nov 26 08:48 setup.sh.local
[2025-11-27 14:09:16] -rw-------. 1 boincer umatlas    991830 Nov 26 08:48 agis_schedconf.cvmfs.json
[2025-11-27 14:09:16] drwx------. 5 boincer umatlas      4096 Nov 26 08:48 pilot3
[2025-11-27 14:09:16] -rw-r--r--. 1 boincer umatlas       533 Nov 27 13:57 boinc_task_state.xml
[2025-11-27 14:09:16] -rw-r--r--. 1 boincer umatlas      6946 Nov 27 14:00 init_data.xml
[2025-11-27 14:09:16] -rw-------. 1 boincer umatlas 931798622 Nov 27 14:06 HITS.47556161._001581.pool.root.1
[2025-11-27 14:09:16] -rw-------. 1 boincer umatlas      1069 Nov 27 14:07 memory_monitor_summary.json
[2025-11-27 14:09:16] -rw-------. 1 boincer umatlas   1516240 Nov 27 14:07 agis_ddmendpoints.agis.ALL.json
[2025-11-27 14:09:16] -rw-------. 1 boincer umatlas   2613004 Nov 27 14:07 log.47556161._001581.job.log.tgz.1
[2025-11-27 14:09:16] -rw-------. 1 boincer umatlas      8634 Nov 27 14:08 heartbeat.json
[2025-11-27 14:09:16] -rw-------. 1 boincer umatlas        95 Nov 27 14:08 pilot_heartbeat.json
[2025-11-27 14:09:16] -rw-------. 1 boincer umatlas      4823 Nov 27 14:09 pilotlog.txt
[2025-11-27 14:09:16] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 14:09 boinc_mmap_file
[2025-11-27 14:09:16] -rw-------. 1 boincer umatlas  12683797 Nov 27 14:09 log.47556161._001581.job.log.1
[2025-11-27 14:09:16] -rw-------. 1 boincer umatlas       353 Nov 27 14:09 output.list
[2025-11-27 14:09:16] -rw-r--r--. 1 boincer umatlas        29 Nov 27 14:09 wrapper_checkpoint.txt
[2025-11-27 14:09:16] -rw-r--r--. 1 boincer umatlas       620 Nov 27 14:09 runtime_log
[2025-11-27 14:09:16] -rw-------. 1 boincer umatlas  15319040 Nov 27 14:09 result.tar.gz
[2025-11-27 14:09:16] -rw-r--r--. 1 boincer umatlas      9339 Nov 27 14:09 runtime_log.err
[2025-11-27 14:09:16] -rw-------. 1 boincer umatlas       667 Nov 27 14:09 kgJODmROBi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm1OMKDmY4TZhm.diag
[2025-11-27 14:09:16] -rw-r--r--. 1 boincer umatlas     21159 Nov 27 14:09 stderr.txt
[2025-11-27 14:09:16] HITS file was successfully produced:
[2025-11-27 14:09:16] -rw-------. 1 boincer umatlas 931798622 Nov 27 14:06 shared/HITS.pool.root.1
[2025-11-27 14:09:16]  *** Contents of shared directory: ***
[2025-11-27 14:09:16] total 1326892
[2025-11-27 14:09:16] -rw-r--r--. 2 boincer umatlas 410999326 Nov 26 08:48 ATLAS.root_0
[2025-11-27 14:09:16] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 08:48 start_atlas.sh
[2025-11-27 14:09:16] -rw-r--r--. 2 boincer umatlas    590100 Nov 26 08:48 input.tar.gz
[2025-11-27 14:09:16] -rw-------. 1 boincer umatlas 931798622 Nov 27 14:06 HITS.pool.root.1
[2025-11-27 14:09:16] -rw-------. 1 boincer umatlas  15319040 Nov 27 14:09 result.tar.gz
14:09:18 (808744): run_atlas exited; CPU time 211523.635675
14:09:18 (808744): called boinc_finish(0)

</stderr_txt>
]]>

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