Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
08:55:23 (961435): wrapper (7.7.26015): starting
08:55:23 (961435): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 08:55:23] Arguments: --nthreads 8
[2025-11-26 08:55:23] Threads: 8
[2025-11-26 08:55:23] Checking for CVMFS
[2025-11-26 08:55:24] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 08:55:24] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 08:55:24] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 08:55:25] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 08:55:25] 2.13.3.0 12357 30090 266684 153323 1 943 28408970 32503809 64389 16776704 0 463377024 99.631 401889147 46865 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 08:55:25] CVMFS is ok
[2025-11-26 08:55:25] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 08:55:25] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 08:55:25] Further information can be found at the LHC@home message board.
[2025-11-26 08:55:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 08:55:25] Checking for apptainer binary...
[2025-11-26 08:55:25] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 08:55:25] Running /usr/bin/apptainer --version
[2025-11-26 08:55:25] apptainer version 1.4.4-1.el9
[2025-11-26 08:55:25] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 08:56:06] c8-7-2.aglt2.org
[2025-11-26 08:56:06] apptainer works
[2025-11-26 08:56:06] Set ATHENA_PROC_NUMBER=8
[2025-11-26 08:56:06] Set ATHENA_CORE_NUMBER=8
[2025-11-26 08:56:06] Starting ATLAS job with PandaID=6895401418
[2025-11-26 08:56:06] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 20:02:35]  *** The last 200 lines of the pilot log: ***
[2025-11-26 20:02:35] 2025-11-27 01:01:14,876 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 20:02:35] 2025-11-27 01:01:15,559 | INFO     | time since job start (39840s) is within the limit (172800.0s)
[2025-11-26 20:02:35] 2025-11-27 01:01:15,559 | INFO     | 39843s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-26 20:02:35] 2025-11-27 01:01:17,407 | INFO     | monitor loop #2285: job 0:6895401418 is in state 'finished'
[2025-11-26 20:02:35] 2025-11-27 01:01:17,407 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 20:02:35] 2025-11-27 01:01:18,901 | INFO     | PID=1021723 has CPU usage=3.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 20:02:35] 2025-11-27 01:01:18,901 | INFO     | .. there are 104 such processes running
[2025-11-26 20:02:35] 2025-11-27 01:01:19,902 | INFO     | time since job start (39844s) is within the limit (172800.0s)
[2025-11-26 20:02:35] 2025-11-27 01:01:19,915 | INFO     | monitor loop #2286: job 0:6895401418 is in state 'finished'
[2025-11-26 20:02:35] 2025-11-27 01:01:19,915 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 20:02:35] 2025-11-27 01:01:21,911 | INFO     | time since job start (39846s) is within the limit (172800.0s)
[2025-11-26 20:02:35] 2025-11-27 01:01:22,424 | INFO     | monitor loop #2287: job 0:6895401418 is in state 'finished'
[2025-11-26 20:02:35] 2025-11-27 01:01:22,424 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 20:02:35] 2025-11-27 01:01:23,922 | INFO     | time since job start (39848s) is within the limit (172800.0s)
[2025-11-26 20:02:35] 2025-11-27 01:01:24,954 | INFO     | monitor loop #2288: job 0:6895401418 is in state 'finished'
[2025-11-26 20:02:35] 2025-11-27 01:01:24,954 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 20:02:35] 2025-11-27 01:01:25,734 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-26 20:02:35] 2025-11-27 01:01:25,751 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3797.257992187499
[2025-11-26 20:02:35] 2025-11-27 01:01:25,779 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6895401418/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 20:02:35] 2025-11-27 01:01:25,779 | INFO     | extracted standard info from prmon json
[2025-11-26 20:02:35] 2025-11-27 01:01:25,779 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 20:02:35] 2025-11-27 01:01:25,779 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 20:02:35] 2025-11-27 01:01:25,784 | INFO     | fitting pss+swap vs Time
[2025-11-26 20:02:35] 2025-11-27 01:01:25,785 | INFO     | sum of square deviations: 85548692305.67136
[2025-11-26 20:02:35] 2025-11-27 01:01:25,790 | INFO     | sum of deviations: 579441873505.5526
[2025-11-26 20:02:35] 2025-11-27 01:01:25,790 | INFO     | mean x: 1764185405.5883257
[2025-11-26 20:02:35] 2025-11-27 01:01:25,790 | INFO     | mean y: 2831070.599078341
[2025-11-26 20:02:35] 2025-11-27 01:01:25,790 | INFO     | intersect: -11946421092.984072
[2025-11-26 20:02:35] 2025-11-27 01:01:25,790 | INFO     | chi2: 16.871968269572417
[2025-11-26 20:02:35] 2025-11-27 01:01:25,791 | INFO     | sum of square deviations: 83592707326.42693
[2025-11-26 20:02:35] 2025-11-27 01:01:25,796 | INFO     | sum of deviations: 803333973918.368
[2025-11-26 20:02:35] 2025-11-27 01:01:25,796 | INFO     | mean x: 1764185253.0928793
[2025-11-26 20:02:35] 2025-11-27 01:01:25,796 | INFO     | mean y: 2848523.710526316
[2025-11-26 20:02:35] 2025-11-27 01:01:25,796 | INFO     | intersect: -16951141787.442404
[2025-11-26 20:02:35] 2025-11-27 01:01:25,796 | INFO     | chi2: 13.363309069874704
[2025-11-26 20:02:35] 2025-11-27 01:01:25,796 | INFO     | current chi2=13.363309069874704 (change=20.795790648950952 %)
[2025-11-26 20:02:35] 2025-11-27 01:01:25,796 | INFO     | right removable region: 645
[2025-11-26 20:02:35] 2025-11-27 01:01:25,797 | INFO     | sum of square deviations: 83592473696.42693
[2025-11-26 20:02:35] 2025-11-27 01:01:25,801 | INFO     | sum of deviations: 327376859628.9905
[2025-11-26 20:02:35] 2025-11-27 01:01:25,801 | INFO     | mean x: 1764185558.0928793
[2025-11-26 20:02:35] 2025-11-27 01:01:25,801 | INFO     | mean y: 2850714.1501547988
[2025-11-26 20:02:35] 2025-11-27 01:01:25,801 | INFO     | intersect: -6906306322.028709
[2025-11-26 20:02:35] 2025-11-27 01:01:25,802 | INFO     | chi2: 12.796643584595648
[2025-11-26 20:02:35] 2025-11-27 01:01:25,802 | INFO     | current chi2=12.796643584595648 (change=24.154411742975906 %)
[2025-11-26 20:02:35] 2025-11-27 01:01:25,802 | INFO     | left removable region: 10
[2025-11-26 20:02:35] 2025-11-27 01:01:25,802 | INFO     | sum of square deviations: 79394511367.99358
[2025-11-26 20:02:35] 2025-11-27 01:01:25,807 | INFO     | sum of deviations: 377348426525.572
[2025-11-26 20:02:35] 2025-11-27 01:01:25,807 | INFO     | mean x: 1764185527.6031497
[2025-11-26 20:02:35] 2025-11-27 01:01:25,807 | INFO     | mean y: 2891084.0141732283
[2025-11-26 20:02:35] 2025-11-27 01:01:25,807 | INFO     | intersect: -8381978618.812719
[2025-11-26 20:02:35] 2025-11-27 01:01:25,807 | INFO     | chi2: 4.985386224847681
[2025-11-26 20:02:35] 2025-11-27 01:01:25,807 | INFO     | current memory leak: 4.75 B/s (using 635 data points, chi2=4.99)
[2025-11-26 20:02:35] 2025-11-27 01:01:25,808 | INFO     | could have reported an average CPU frequency of 3797 MHz (25 samples)
[2025-11-26 20:02:35] 2025-11-27 01:01:25,808 | INFO     | ..............................
[2025-11-26 20:02:35] 2025-11-27 01:01:25,808 | INFO     | . Timing measurements:
[2025-11-26 20:02:35] 2025-11-27 01:01:25,808 | INFO     | . get job = 0 s
[2025-11-26 20:02:35] 2025-11-27 01:01:25,808 | INFO     | . initial setup = 3 s
[2025-11-26 20:02:35] 2025-11-27 01:01:25,808 | INFO     | . payload setup = 49 s
[2025-11-26 20:02:35] 2025-11-27 01:01:25,808 | INFO     | . stage-in = 0 s
[2025-11-26 20:02:35] 2025-11-27 01:01:25,808 | INFO     | . payload execution = 39679 s
[2025-11-26 20:02:35] 2025-11-27 01:01:25,808 | INFO     | . stage-out = 4 s
[2025-11-26 20:02:35] 2025-11-27 01:01:25,808 | INFO     | . log creation = 1 s
[2025-11-26 20:02:35] 2025-11-27 01:01:25,808 | INFO     | ..............................
[2025-11-26 20:02:35] 2025-11-27 01:01:25,890 | INFO     | 
[2025-11-26 20:02:35] 2025-11-27 01:01:25,890 | INFO     | job summary report
[2025-11-26 20:02:35] 2025-11-27 01:01:25,890 | INFO     | --------------------------------------------------
[2025-11-26 20:02:35] 2025-11-27 01:01:25,890 | INFO     | PanDA job id: 6895401418
[2025-11-26 20:02:35] 2025-11-27 01:01:25,890 | INFO     | task id: 47556149
[2025-11-26 20:02:35] 2025-11-27 01:01:25,890 | INFO     | errors: (none)
[2025-11-26 20:02:35] 2025-11-27 01:01:25,890 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 20:02:35] 2025-11-27 01:01:25,890 | INFO     | pilot state: finished 
[2025-11-26 20:02:35] 2025-11-27 01:01:25,890 | INFO     | transexitcode: 0
[2025-11-26 20:02:35] 2025-11-27 01:01:25,890 | INFO     | exeerrorcode: 0
[2025-11-26 20:02:35] 2025-11-27 01:01:25,890 | INFO     | exeerrordiag: 
[2025-11-26 20:02:35] 2025-11-27 01:01:25,890 | INFO     | exitcode: 0
[2025-11-26 20:02:35] 2025-11-27 01:01:25,890 | INFO     | exitmsg: OK
[2025-11-26 20:02:35] 2025-11-27 01:01:25,890 | INFO     | cpuconsumptiontime: 139364 s
[2025-11-26 20:02:35] 2025-11-27 01:01:25,890 | INFO     | nevents: 1000
[2025-11-26 20:02:35] 2025-11-27 01:01:25,891 | INFO     | neventsw: 0
[2025-11-26 20:02:35] 2025-11-27 01:01:25,891 | INFO     | pid: 1057680
[2025-11-26 20:02:35] 2025-11-27 01:01:25,891 | INFO     | pgrp: 1057680
[2025-11-26 20:02:35] 2025-11-27 01:01:25,891 | INFO     | corecount: 8
[2025-11-26 20:02:35] 2025-11-27 01:01:25,891 | INFO     | event service: False
[2025-11-26 20:02:35] 2025-11-27 01:01:25,891 | INFO     | sizes: {0: 2284315, 11: 2284315, 22: 2284343, 28: 2284633, 32: 2284661, 39733: 2328074, 39740: 2337068, 39742: 2337124, 39784: 2337434}
[2025-11-26 20:02:35] 2025-11-27 01:01:25,891 | INFO     | --------------------------------------------------
[2025-11-26 20:02:35] 2025-11-27 01:01:25,891 | INFO     | 
[2025-11-26 20:02:35] 2025-11-27 01:01:25,891 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-11-26 20:02:35] 2025-11-27 01:01:25,928 | INFO     | time since job start (39850s) is within the limit (172800.0s)
[2025-11-26 20:02:35] 2025-11-27 01:01:25,941 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 20:02:35] 2025-11-27 01:01:25,941 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 20:02:35] 2025-11-27 01:01:25,941 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 20:02:35] 2025-11-27 01:01:25,941 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 20:02:35] 2025-11-27 01:01:25,941 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 20:02:35] 2025-11-27 01:01:25,942 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 20:02:35] 2025-11-27 01:01:25,942 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 20:02:35] 2025-11-27 01:01:25,942 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 20:02:35] 2025-11-27 01:01:25,942 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 20:02:35] 2025-11-27 01:01:25,942 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 20:02:35] 2025-11-27 01:01:25,942 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 20:02:35] 2025-11-27 01:01:25,942 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 20:02:35] 2025-11-27 01:01:25,942 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 20:02:35] 2025-11-27 01:01:25,942 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 20:02:35] 2025-11-27 01:01:25,942 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 20:02:35] 2025-11-27 01:01:25,942 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 20:02:35] 2025-11-27 01:01:25,942 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 20:02:35] 2025-11-27 01:01:25,942 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 20:02:35] 2025-11-27 01:01:25,942 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 20:02:35] 2025-11-27 01:01:25,942 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 20:02:35] 2025-11-27 01:01:25,942 | INFO     | job 6895401418 has completed (purged errors)
[2025-11-26 20:02:35] 2025-11-27 01:01:25,942 | INFO     | overall cleanup function is called
[2025-11-26 20:02:35] 2025-11-27 01:01:26,973 | INFO     | --- collectZombieJob: --- 10, [1057680]
[2025-11-26 20:02:35] 2025-11-27 01:01:26,973 | INFO     | zombie collector waiting for pid 1057680
[2025-11-26 20:02:35] 2025-11-27 01:01:26,973 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 20:02:35] 2025-11-27 01:01:26,973 | INFO     | collected zombie processes
[2025-11-26 20:02:35] 2025-11-27 01:01:26,973 | INFO     | will attempt to kill all subprocesses of pid=1057680
[2025-11-26 20:02:35] 2025-11-27 01:01:29,131 | INFO     | process IDs to be killed: [1057680] (in reverse order)
[2025-11-26 20:02:35] 2025-11-27 01:01:29,441 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 20:02:35] 2025-11-27 01:01:29,441 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 20:02:35] 2025-11-27 01:01:29,511 | INFO     | did not find any defunct processes belonging to 1057680
[2025-11-26 20:02:35] 2025-11-27 01:01:29,548 | INFO     | did not find any defunct processes belonging to 1057680
[2025-11-26 20:02:35] 2025-11-27 01:01:29,549 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 20:02:35] 2025-11-27 01:01:29,551 | INFO     | ready for new job
[2025-11-26 20:02:35] 2025-11-27 01:01:29,551 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 20:02:35] 2025-11-27 01:01:29,554 | INFO     | ***************************************
[2025-11-26 20:02:35] 2025-11-27 01:01:29,554 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 20:02:35] 2025-11-27 01:01:29,554 | INFO     | ***************************************
[2025-11-26 20:02:35] 2025-11-27 01:01:29,554 | INFO     | 
[2025-11-26 20:02:35] 2025-11-27 01:01:29,559 | INFO     | architecture information:
[2025-11-26 20:02:35] 2025-11-27 01:01:29,559 | INFO     | executing command: cat /etc/os-release
[2025-11-26 20:02:35] 2025-11-27 01:01:29,628 | INFO     | cat /etc/os-release:
[2025-11-26 20:02:35] NAME="CentOS Linux"
[2025-11-26 20:02:35] VERSION="7 (Core)"
[2025-11-26 20:02:35] ID="centos"
[2025-11-26 20:02:35] ID_LIKE="rhel fedora"
[2025-11-26 20:02:35] VERSION_ID="7"
[2025-11-26 20:02:35] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 20:02:35] ANSI_COLOR="0;31"
[2025-11-26 20:02:35] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 20:02:35] HOME_URL="https://www.centos.org/"
[2025-11-26 20:02:35] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 20:02:35] 
[2025-11-26 20:02:35] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 20:02:35] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 20:02:35] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 20:02:35] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 20:02:35] 
[2025-11-26 20:02:35] 2025-11-27 01:01:29,628 | INFO     | ***************************************
[2025-11-26 20:02:35] 2025-11-27 01:01:30,132 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-11-26 20:02:35] 2025-11-27 01:01:30,207 | INFO     | sufficient remaining disk space (81123082240 B)
[2025-11-26 20:02:35] 2025-11-27 01:01:30,207 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 20:02:35] 2025-11-27 01:01:30,208 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 20:02:35] 2025-11-27 01:01:30,208 | INFO     | update_server=False
[2025-11-26 20:02:35] 2025-11-27 01:01:30,208 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 20:02:35] 2025-11-27 01:01:30,208 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 20:02:35] 2025-11-27 01:01:30,549 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 20:02:35] 2025-11-27 01:01:30,656 | INFO     | all payload control threads have been joined
[2025-11-26 20:02:35] 2025-11-27 01:01:30,906 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 20:02:35] 2025-11-27 01:01:30,988 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 20:02:35] 2025-11-27 01:01:30,988 | INFO     | aborting loop
[2025-11-26 20:02:35] 2025-11-27 01:01:31,037 | INFO     | all data control threads have been joined
[2025-11-26 20:02:35] 2025-11-27 01:01:31,213 | INFO     | [job] retrieve thread has finished
[2025-11-26 20:02:35] 2025-11-27 01:01:31,360 | INFO     | [payload] failed_post thread has finished
[2025-11-26 20:02:35] 2025-11-27 01:01:31,394 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 20:02:35] 2025-11-27 01:01:31,430 | INFO     | all job control threads have been joined
[2025-11-26 20:02:35] 2025-11-27 01:01:31,502 | INFO     | [job] validate thread has finished
[2025-11-26 20:02:35] 2025-11-27 01:01:31,516 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 20:02:35] 2025-11-27 01:01:31,595 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 20:02:35] 2025-11-27 01:01:31,662 | INFO     | [payload] control thread has finished
[2025-11-26 20:02:35] 2025-11-27 01:01:31,912 | INFO     | [job] queue monitor thread has finished
[2025-11-26 20:02:35] 2025-11-27 01:01:31,995 | INFO     | [job] job monitor thread has finished
[2025-11-26 20:02:35] 2025-11-27 01:01:32,042 | INFO     | [data] control thread has finished
[2025-11-26 20:02:35] 2025-11-27 01:01:32,106 | INFO     | [data] copytool_in thread has finished
[2025-11-26 20:02:35] 2025-11-27 01:01:32,215 | INFO     | [data] copytool_out thread has finished
[2025-11-26 20:02:35] 2025-11-27 01:01:32,399 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 20:02:35] 2025-11-27 01:01:32,435 | INFO     | [job] control thread has finished
[2025-11-26 20:02:35] 2025-11-27 01:01:32,747 | INFO     | [payload] validate_post thread has finished
[2025-11-26 20:02:35] 2025-11-27 01:01:34,569 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 20:02:35] 2025-11-27 01:02:00,414 | INFO     | PID=1021723 has CPU usage=4.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 20:02:35] 2025-11-27 01:02:00,414 | INFO     | .. there are 104 such processes running
[2025-11-26 20:02:35] 2025-11-27 01:02:00,414 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 20:02:35] 2025-11-27 01:02:00,415 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 20:02:35] 2025-11-27 01:02:00,415 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 20:02:35] 2025-11-27 01:02:26,430 | INFO     | [monitor] cgroup control has ended
[2025-11-26 20:02:35] 2025-11-27 01:02:27,824 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139983555938112)>', '<ExcThread(monitor, started 139982983395072)>']
[2025-11-26 20:02:35] 2025-11-27 01:02:28,586 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 20:02:35] 2025-11-27 01:02:28,586 | INFO     | [monitor] control thread has ended
[2025-11-26 20:02:35] 2025-11-27 01:02:32,850 | INFO     | all workflow threads have been joined
[2025-11-26 20:02:35] 2025-11-27 01:02:32,850 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 20:02:35] 2025-11-27 01:02:32,850 | INFO     | traces error code: 0
[2025-11-26 20:02:35] 2025-11-27 01:02:32,850 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 20:02:35] 2025-11-27 01:02:33,191 [wrapper] ==== pilot stdout END ====
[2025-11-26 20:02:35] 2025-11-27 01:02:33,207 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 20:02:35] 2025-11-27 01:02:33,253 [wrapper] pilotpid: 1021723
[2025-11-26 20:02:35] 2025-11-27 01:02:33,286 [wrapper] Pilot exit status: 0
[2025-11-26 20:02:35] 2025-11-27 01:02:33,427 [wrapper] pandaids: 6895401418
[2025-11-26 20:02:35] 2025-11-27 01:02:34,195 [wrapper] cleanup supervisor_pilot 1711182 1021725
[2025-11-26 20:02:35] 2025-11-27 01:02:34,240 [wrapper] Test setup, not cleaning
[2025-11-26 20:02:35] 2025-11-27 01:02:34,331 [wrapper] apfmon messages muted
[2025-11-26 20:02:35] 2025-11-27 01:02:34,384 [wrapper] ==== wrapper stdout END ====
[2025-11-26 20:02:35] 2025-11-27 01:02:34,420 [wrapper] ==== wrapper stderr END ====
[2025-11-26 20:02:35]  *** Error codes and diagnostics ***
[2025-11-26 20:02:35]     "exeErrorCode": 0,
[2025-11-26 20:02:35]     "exeErrorDiag": "",
[2025-11-26 20:02:35]     "pilotErrorCode": 0,
[2025-11-26 20:02:35]     "pilotErrorDiag": "",
[2025-11-26 20:02:35]  *** Listing of results directory ***
[2025-11-26 20:02:35] total 1311880
[2025-11-26 20:02:35] -rw-r--r--. 1 boincer umatlas      5112 Nov 24 02:29 queuedata.json
[2025-11-26 20:02:35] -rwx------. 1 boincer umatlas     36292 Nov 24 02:32 runpilot2-wrapper.sh
[2025-11-26 20:02:35] -rw-r--r--. 1 boincer umatlas    576529 Nov 24 02:32 pilot3.tar.gz
[2025-11-26 20:02:35] -rw-r--r--. 1 boincer umatlas       100 Nov 26 08:55 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 20:02:35] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 08:55 run_atlas
[2025-11-26 20:02:35] -rw-r--r--. 1 boincer umatlas       105 Nov 26 08:55 job.xml
[2025-11-26 20:02:35] -rw-r--r--. 2 boincer umatlas 413759153 Nov 26 08:55 EVNT.47483658._001262.pool.root.1
[2025-11-26 20:02:35] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 08:55 shared
[2025-11-26 20:02:35] -rw-r--r--. 2 boincer umatlas    590101 Nov 26 08:55 input.tar.gz
[2025-11-26 20:02:35] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 08:55 start_atlas.sh
[2025-11-26 20:02:35] -rw-r--r--. 1 boincer umatlas         0 Nov 26 08:55 boinc_lockfile
[2025-11-26 20:02:35] -rw-r--r--. 1 boincer umatlas      2786 Nov 26 08:56 pandaJob.out
[2025-11-26 20:02:35] -rw-------. 1 boincer umatlas        57 Nov 26 08:56 setup.sh.local
[2025-11-26 20:02:35] -rw-------. 1 boincer umatlas    991830 Nov 26 08:57 agis_schedconf.cvmfs.json
[2025-11-26 20:02:35] drwx------. 5 boincer umatlas      4096 Nov 26 08:57 pilot3
[2025-11-26 20:02:35] -rw-r--r--. 1 boincer umatlas       533 Nov 26 19:42 boinc_task_state.xml
[2025-11-26 20:02:35] -rw-------. 1 boincer umatlas 912176585 Nov 26 19:59 HITS.47556149._002482.pool.root.1
[2025-11-26 20:02:35] -rw-------. 1 boincer umatlas      1074 Nov 26 20:00 memory_monitor_summary.json
[2025-11-26 20:02:35] -rw-------. 1 boincer umatlas   1516240 Nov 26 20:00 agis_ddmendpoints.agis.ALL.json
[2025-11-26 20:02:35] -rw-------. 1 boincer umatlas   1859979 Nov 26 20:00 log.47556149._002482.job.log.tgz.1
[2025-11-26 20:02:35] -rw-r--r--. 1 boincer umatlas      7171 Nov 26 20:00 init_data.xml
[2025-11-26 20:02:35] -rw-------. 1 boincer umatlas        95 Nov 26 20:01 pilot_heartbeat.json
[2025-11-26 20:02:35] -rw-------. 1 boincer umatlas      8641 Nov 26 20:01 heartbeat.json
[2025-11-26 20:02:35] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 20:02 boinc_mmap_file
[2025-11-26 20:02:35] -rw-r--r--. 1 boincer umatlas        29 Nov 26 20:02 wrapper_checkpoint.txt
[2025-11-26 20:02:35] -rw-------. 1 boincer umatlas      4825 Nov 26 20:02 pilotlog.txt
[2025-11-26 20:02:35] -rw-------. 1 boincer umatlas   4892557 Nov 26 20:02 log.47556149._002482.job.log.1
[2025-11-26 20:02:35] -rw-------. 1 boincer umatlas       353 Nov 26 20:02 output.list
[2025-11-26 20:02:35] -rw-r--r--. 1 boincer umatlas       620 Nov 26 20:02 runtime_log
[2025-11-26 20:02:35] -rw-------. 1 boincer umatlas   6768640 Nov 26 20:02 result.tar.gz
[2025-11-26 20:02:35] -rw-r--r--. 1 boincer umatlas      9333 Nov 26 20:02 runtime_log.err
[2025-11-26 20:02:35] -rw-------. 1 boincer umatlas       664 Nov 26 20:02 96eKDmfEgh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmNWLKDmr60MNo.diag
[2025-11-26 20:02:35] -rw-r--r--. 1 boincer umatlas     21883 Nov 26 20:02 stderr.txt
[2025-11-26 20:02:35] HITS file was successfully produced:
[2025-11-26 20:02:35] -rw-------. 1 boincer umatlas 912176585 Nov 26 19:59 shared/HITS.pool.root.1
[2025-11-26 20:02:35]  *** Contents of shared directory: ***
[2025-11-26 20:02:35] total 1302080
[2025-11-26 20:02:35] -rw-r--r--. 2 boincer umatlas 413759153 Nov 26 08:55 ATLAS.root_0
[2025-11-26 20:02:35] -rw-r--r--. 2 boincer umatlas    590101 Nov 26 08:55 input.tar.gz
[2025-11-26 20:02:35] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 08:55 start_atlas.sh
[2025-11-26 20:02:35] -rw-------. 1 boincer umatlas 912176585 Nov 26 19:59 HITS.pool.root.1
[2025-11-26 20:02:35] -rw-------. 1 boincer umatlas   6768640 Nov 26 20:02 result.tar.gz
20:02:36 (961435): run_atlas exited; CPU time 140306.838024
20:02:36 (961435): called boinc_finish(0)

</stderr_txt>
]]>

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