Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
09:47:26 (503346): wrapper (7.7.26015): starting
09:47:26 (503346): wrapper: running run_atlas (--nthreads 9)
[2025-11-26 09:47:26] Arguments: --nthreads 9
[2025-11-26 09:47:26] Threads: 9
[2025-11-26 09:47:26] Checking for CVMFS
[2025-11-26 09:47:26] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 09:47:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 09:47:26] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 09:47:26] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 09:47:26] 2.13.3.0 15551 28487 355848 153324 3 505 32533061 32935936 27673 16776704 0 53333853 99.572 61990688 39854 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 09:47:26] CVMFS is ok
[2025-11-26 09:47:26] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 09:47:26] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 09:47:26] Further information can be found at the LHC@home message board.
[2025-11-26 09:47:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 09:47:26] Checking for apptainer binary...
[2025-11-26 09:47:26] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 09:47:26] Running /usr/bin/apptainer --version
[2025-11-26 09:47:26] apptainer version 1.4.4-1.el9
[2025-11-26 09:47:26] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 09:47:27] c6-5-7-3.aglt2.org
[2025-11-26 09:47:27] apptainer works
[2025-11-26 09:47:27] Set ATHENA_PROC_NUMBER=9
[2025-11-26 09:47:27] Set ATHENA_CORE_NUMBER=9
[2025-11-26 09:47:27] Starting ATLAS job with PandaID=6896577824
[2025-11-26 09:47:27] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 05:29:15]  *** The last 200 lines of the pilot log: ***
[2025-11-27 05:29:15] 2025-11-27 10:27:46,747 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 05:29:15] 2025-11-27 10:27:48,035 | INFO     | time since job start (70804s) is within the limit (172800.0s)
[2025-11-27 05:29:15] 2025-11-27 10:27:49,274 | INFO     | monitor loop #4567: job 0:6896577824 is in state 'finished'
[2025-11-27 05:29:15] 2025-11-27 10:27:49,274 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 05:29:15] 2025-11-27 10:27:50,041 | INFO     | time since job start (70806s) is within the limit (172800.0s)
[2025-11-27 05:29:15] 2025-11-27 10:27:51,780 | INFO     | monitor loop #4568: job 0:6896577824 is in state 'finished'
[2025-11-27 05:29:15] 2025-11-27 10:27:51,780 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 05:29:15] 2025-11-27 10:27:52,095 | INFO     | time since job start (70808s) is within the limit (172800.0s)
[2025-11-27 05:29:15] 2025-11-27 10:27:54,103 | INFO     | time since job start (70810s) is within the limit (172800.0s)
[2025-11-27 05:29:15] 2025-11-27 10:27:54,303 | INFO     | monitor loop #4569: job 0:6896577824 is in state 'finished'
[2025-11-27 05:29:15] 2025-11-27 10:27:54,303 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 05:29:15] 2025-11-27 10:27:56,110 | INFO     | time since job start (70812s) is within the limit (172800.0s)
[2025-11-27 05:29:15] 2025-11-27 10:27:56,811 | INFO     | monitor loop #4570: job 0:6896577824 is in state 'finished'
[2025-11-27 05:29:15] 2025-11-27 10:27:56,866 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 05:29:15] 2025-11-27 10:27:57,236 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 05:29:15] 2025-11-27 10:27:57,251 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2961.577821428572
[2025-11-27 05:29:15] 2025-11-27 10:27:57,267 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6896577824/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 05:29:15] 2025-11-27 10:27:57,267 | INFO     | extracted standard info from prmon json
[2025-11-27 05:29:15] 2025-11-27 10:27:57,267 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 05:29:15] 2025-11-27 10:27:57,267 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 05:29:15] 2025-11-27 10:27:57,358 | INFO     | fitting pss+swap vs Time
[2025-11-27 05:29:15] 2025-11-27 10:27:57,359 | INFO     | sum of square deviations: 484040210616.3441
[2025-11-27 05:29:15] 2025-11-27 10:27:57,428 | INFO     | sum of deviations: 3483006871627.6187
[2025-11-27 05:29:15] 2025-11-27 10:27:57,428 | INFO     | mean x: 1764203848.8801725
[2025-11-27 05:29:15] 2025-11-27 10:27:57,428 | INFO     | mean y: 2997473.292241379
[2025-11-27 05:29:15] 2025-11-27 10:27:57,428 | INFO     | intersect: -12691679526.32571
[2025-11-27 05:29:15] 2025-11-27 10:27:57,429 | INFO     | chi2: 16.509834536163197
[2025-11-27 05:29:15] 2025-11-27 10:27:57,439 | INFO     | sum of square deviations: 477808916951.7779
[2025-11-27 05:29:15] 2025-11-27 10:27:57,500 | INFO     | sum of deviations: 3878221731851.935
[2025-11-27 05:29:15] 2025-11-27 10:27:57,500 | INFO     | mean x: 1764203696.3861473
[2025-11-27 05:29:15] 2025-11-27 10:27:57,500 | INFO     | mean y: 3007143.208658009
[2025-11-27 05:29:15] 2025-11-27 10:27:57,500 | INFO     | intersect: -14316468429.552126
[2025-11-27 05:29:15] 2025-11-27 10:27:57,501 | INFO     | chi2: 13.265308816843454
[2025-11-27 05:29:15] 2025-11-27 10:27:57,501 | INFO     | current chi2=13.265308816843454 (change=19.652078960651743 %)
[2025-11-27 05:29:15] 2025-11-27 10:27:57,501 | INFO     | right removable region: 1154
[2025-11-27 05:29:15] 2025-11-27 10:27:57,509 | INFO     | sum of square deviations: 477807940341.7782
[2025-11-27 05:29:15] 2025-11-27 10:27:57,569 | INFO     | sum of deviations: 3063535894250.8887
[2025-11-27 05:29:15] 2025-11-27 10:27:57,570 | INFO     | mean x: 1764204001.3861473
[2025-11-27 05:29:15] 2025-11-27 10:27:57,570 | INFO     | mean y: 3007733.755844156
[2025-11-27 05:29:15] 2025-11-27 10:27:57,570 | INFO     | intersect: -11308445732.59195
[2025-11-27 05:29:15] 2025-11-27 10:27:57,571 | INFO     | chi2: 13.50714737652207
[2025-11-27 05:29:15] 2025-11-27 10:27:57,571 | INFO     | current chi2=13.50714737652207 (change=18.18726379761124 %)
[2025-11-27 05:29:15] 2025-11-27 10:27:57,571 | INFO     | left removable region: 10
[2025-11-27 05:29:15] 2025-11-27 10:27:57,580 | INFO     | sum of square deviations: 464286891441.43994
[2025-11-27 05:29:15] 2025-11-27 10:27:57,671 | INFO     | sum of deviations: 3314912176431.585
[2025-11-27 05:29:15] 2025-11-27 10:27:57,671 | INFO     | mean x: 1764203970.8994756
[2025-11-27 05:29:15] 2025-11-27 10:27:57,671 | INFO     | mean y: 3024785.648601399
[2025-11-27 05:29:15] 2025-11-27 10:27:57,671 | INFO     | intersect: -12593025916.293842
[2025-11-27 05:29:15] 2025-11-27 10:27:57,672 | INFO     | chi2: 8.902439470927929
[2025-11-27 05:29:15] 2025-11-27 10:27:57,672 | INFO     | current memory leak: 7.14 B/s (using 1144 data points, chi2=8.90)
[2025-11-27 05:29:15] 2025-11-27 10:27:57,682 | INFO     | could have reported an average CPU frequency of 2997 MHz (42 samples)
[2025-11-27 05:29:15] 2025-11-27 10:27:57,682 | INFO     | ..............................
[2025-11-27 05:29:15] 2025-11-27 10:27:57,682 | INFO     | . Timing measurements:
[2025-11-27 05:29:15] 2025-11-27 10:27:57,682 | INFO     | . get job = 0 s
[2025-11-27 05:29:15] 2025-11-27 10:27:57,682 | INFO     | . initial setup = 3 s
[2025-11-27 05:29:15] 2025-11-27 10:27:57,682 | INFO     | . payload setup = 8 s
[2025-11-27 05:29:15] 2025-11-27 10:27:57,682 | INFO     | . stage-in = 0 s
[2025-11-27 05:29:15] 2025-11-27 10:27:57,682 | INFO     | . payload execution = 70739 s
[2025-11-27 05:29:15] 2025-11-27 10:27:57,682 | INFO     | . stage-out = 9 s
[2025-11-27 05:29:15] 2025-11-27 10:27:57,683 | INFO     | . log creation = 1 s
[2025-11-27 05:29:15] 2025-11-27 10:27:57,683 | INFO     | ..............................
[2025-11-27 05:29:15] 2025-11-27 10:27:58,117 | INFO     | time since job start (70814s) is within the limit (172800.0s)
[2025-11-27 05:29:15] 2025-11-27 10:27:58,427 | INFO     | 
[2025-11-27 05:29:15] 2025-11-27 10:27:58,427 | INFO     | job summary report
[2025-11-27 05:29:15] 2025-11-27 10:27:58,427 | INFO     | --------------------------------------------------
[2025-11-27 05:29:15] 2025-11-27 10:27:58,427 | INFO     | PanDA job id: 6896577824
[2025-11-27 05:29:15] 2025-11-27 10:27:58,427 | INFO     | task id: 47556161
[2025-11-27 05:29:15] 2025-11-27 10:27:58,427 | INFO     | errors: (none)
[2025-11-27 05:29:15] 2025-11-27 10:27:58,427 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 05:29:15] 2025-11-27 10:27:58,428 | INFO     | pilot state: finished 
[2025-11-27 05:29:15] 2025-11-27 10:27:58,428 | INFO     | transexitcode: 0
[2025-11-27 05:29:15] 2025-11-27 10:27:58,428 | INFO     | exeerrorcode: 0
[2025-11-27 05:29:15] 2025-11-27 10:27:58,428 | INFO     | exeerrordiag: 
[2025-11-27 05:29:15] 2025-11-27 10:27:58,428 | INFO     | exitcode: 0
[2025-11-27 05:29:15] 2025-11-27 10:27:58,428 | INFO     | exitmsg: OK
[2025-11-27 05:29:15] 2025-11-27 10:27:58,428 | INFO     | cpuconsumptiontime: 240707 s
[2025-11-27 05:29:15] 2025-11-27 10:27:58,428 | INFO     | nevents: 1000
[2025-11-27 05:29:15] 2025-11-27 10:27:58,428 | INFO     | neventsw: 0
[2025-11-27 05:29:15] 2025-11-27 10:27:58,428 | INFO     | pid: 514306
[2025-11-27 05:29:15] 2025-11-27 10:27:58,428 | INFO     | pgrp: 514306
[2025-11-27 05:29:15] 2025-11-27 10:27:58,428 | INFO     | corecount: 9
[2025-11-27 05:29:15] 2025-11-27 10:27:58,428 | INFO     | event service: False
[2025-11-27 05:29:15] 2025-11-27 10:27:58,428 | INFO     | sizes: {0: 2284090, 1: 2284289, 7: 2284551, 11: 2284579, 70748: 2343187, 70749: 2343186, 70760: 2352364, 70764: 2352420, 70796: 2352666}
[2025-11-27 05:29:15] 2025-11-27 10:27:58,428 | INFO     | --------------------------------------------------
[2025-11-27 05:29:15] 2025-11-27 10:27:58,428 | INFO     | 
[2025-11-27 05:29:15] 2025-11-27 10:27:58,429 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-27 05:29:15] 2025-11-27 10:27:58,600 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 05:29:15] 2025-11-27 10:27:58,600 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 05:29:15] 2025-11-27 10:27:58,600 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 05:29:15] 2025-11-27 10:27:58,600 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 05:29:15] 2025-11-27 10:27:58,600 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 05:29:15] 2025-11-27 10:27:58,600 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 05:29:15] 2025-11-27 10:27:58,601 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 05:29:15] 2025-11-27 10:27:58,601 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 05:29:15] 2025-11-27 10:27:58,601 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 05:29:15] 2025-11-27 10:27:58,601 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 05:29:15] 2025-11-27 10:27:58,601 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 05:29:15] 2025-11-27 10:27:58,601 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 05:29:15] 2025-11-27 10:27:58,601 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 05:29:15] 2025-11-27 10:27:58,601 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 05:29:15] 2025-11-27 10:27:58,601 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 05:29:15] 2025-11-27 10:27:58,601 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 05:29:15] 2025-11-27 10:27:58,601 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 05:29:15] 2025-11-27 10:27:58,601 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 05:29:15] 2025-11-27 10:27:58,601 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 05:29:15] 2025-11-27 10:27:58,601 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 05:29:15] 2025-11-27 10:27:58,602 | INFO     | job 6896577824 has completed (purged errors)
[2025-11-27 05:29:15] 2025-11-27 10:27:58,602 | INFO     | overall cleanup function is called
[2025-11-27 05:29:15] 2025-11-27 10:27:59,685 | INFO     | --- collectZombieJob: --- 10, [514306]
[2025-11-27 05:29:15] 2025-11-27 10:27:59,685 | INFO     | zombie collector waiting for pid 514306
[2025-11-27 05:29:15] 2025-11-27 10:27:59,685 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 05:29:15] 2025-11-27 10:27:59,685 | INFO     | collected zombie processes
[2025-11-27 05:29:15] 2025-11-27 10:27:59,685 | INFO     | will attempt to kill all subprocesses of pid=514306
[2025-11-27 05:29:15] 2025-11-27 10:28:00,523 | INFO     | process IDs to be killed: [514306] (in reverse order)
[2025-11-27 05:29:15] 2025-11-27 10:28:00,760 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 05:29:15] 2025-11-27 10:28:00,761 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 05:29:15] 2025-11-27 10:28:00,863 | INFO     | did not find any defunct processes belonging to 514306
[2025-11-27 05:29:15] 2025-11-27 10:28:00,970 | INFO     | did not find any defunct processes belonging to 514306
[2025-11-27 05:29:15] 2025-11-27 10:28:00,998 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 05:29:15] 2025-11-27 10:28:00,998 | INFO     | ready for new job
[2025-11-27 05:29:15] 2025-11-27 10:28:00,998 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 05:29:15] 2025-11-27 10:28:01,007 | INFO     | ***************************************
[2025-11-27 05:29:15] 2025-11-27 10:28:01,007 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 05:29:15] 2025-11-27 10:28:01,007 | INFO     | ***************************************
[2025-11-27 05:29:15] 2025-11-27 10:28:01,007 | INFO     | 
[2025-11-27 05:29:15] 2025-11-27 10:28:01,010 | INFO     | architecture information:
[2025-11-27 05:29:15] 2025-11-27 10:28:01,022 | INFO     | executing command: cat /etc/os-release
[2025-11-27 05:29:15] 2025-11-27 10:28:01,126 | INFO     | cat /etc/os-release:
[2025-11-27 05:29:15] NAME="CentOS Linux"
[2025-11-27 05:29:15] VERSION="7 (Core)"
[2025-11-27 05:29:15] ID="centos"
[2025-11-27 05:29:15] ID_LIKE="rhel fedora"
[2025-11-27 05:29:15] VERSION_ID="7"
[2025-11-27 05:29:15] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 05:29:15] ANSI_COLOR="0;31"
[2025-11-27 05:29:15] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 05:29:15] HOME_URL="https://www.centos.org/"
[2025-11-27 05:29:15] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 05:29:15] 
[2025-11-27 05:29:15] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 05:29:15] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 05:29:15] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 05:29:15] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 05:29:15] 
[2025-11-27 05:29:15] 2025-11-27 10:28:01,127 | INFO     | ***************************************
[2025-11-27 05:29:15] 2025-11-27 10:28:01,630 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-27 05:29:15] 2025-11-27 10:28:01,718 | INFO     | sufficient remaining disk space (70275563520 B)
[2025-11-27 05:29:15] 2025-11-27 10:28:01,719 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 05:29:15] 2025-11-27 10:28:01,719 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 05:29:15] 2025-11-27 10:28:01,719 | INFO     | update_server=False
[2025-11-27 05:29:15] 2025-11-27 10:28:01,719 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 05:29:15] 2025-11-27 10:28:01,800 | INFO     | all payload control threads have been joined
[2025-11-27 05:29:15] 2025-11-27 10:28:01,924 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-27 05:29:15] 2025-11-27 10:28:01,924 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-27 05:29:15] 2025-11-27 10:28:01,924 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 05:29:15] 2025-11-27 10:28:01,924 | INFO     | will abort loop
[2025-11-27 05:29:15] 2025-11-27 10:28:02,500 | INFO     | all data control threads have been joined
[2025-11-27 05:29:15] 2025-11-27 10:28:02,762 | INFO     | [job] retrieve thread has finished
[2025-11-27 05:29:15] 2025-11-27 10:28:02,807 | INFO     | [payload] control thread has finished
[2025-11-27 05:29:15] 2025-11-27 10:28:02,825 | INFO     | all job control threads have been joined
[2025-11-27 05:29:15] 2025-11-27 10:28:02,858 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 05:29:15] 2025-11-27 10:28:02,918 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 05:29:15] 2025-11-27 10:28:02,929 | INFO     | [job] job monitor thread has finished
[2025-11-27 05:29:15] 2025-11-27 10:28:03,024 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 05:29:15] 2025-11-27 10:28:03,084 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 05:29:15] 2025-11-27 10:28:03,224 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 05:29:15] 2025-11-27 10:28:03,466 | INFO     | [job] validate thread has finished
[2025-11-27 05:29:15] 2025-11-27 10:28:03,491 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 05:29:15] 2025-11-27 10:28:03,518 | INFO     | [data] control thread has finished
[2025-11-27 05:29:15] 2025-11-27 10:28:03,632 | INFO     | [data] copytool_in thread has finished
[2025-11-27 05:29:15] 2025-11-27 10:28:03,708 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 05:29:15] 2025-11-27 10:28:03,781 | INFO     | [payload] failed_post thread has finished
[2025-11-27 05:29:15] 2025-11-27 10:28:03,830 | INFO     | [job] control thread has finished
[2025-11-27 05:29:15] 2025-11-27 10:28:03,965 | INFO     | [payload] validate_post thread has finished
[2025-11-27 05:29:15] 2025-11-27 10:28:04,044 | INFO     | [job] queue monitor thread has finished
[2025-11-27 05:29:15] 2025-11-27 10:28:04,870 | INFO     | [data] copytool_out thread has finished
[2025-11-27 05:29:15] 2025-11-27 10:28:07,725 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 05:29:15] 2025-11-27 10:28:32,686 | INFO     | PID=507563 has CPU usage=2.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-27 05:29:15] 2025-11-27 10:28:32,687 | INFO     | .. there are 39 such processes running
[2025-11-27 05:29:15] 2025-11-27 10:28:32,694 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 05:29:15] 2025-11-27 10:28:32,694 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 05:29:15] 2025-11-27 10:28:32,695 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 05:29:15] 2025-11-27 10:28:47,961 | INFO     | [monitor] cgroup control has ended
[2025-11-27 05:29:15] 2025-11-27 10:28:48,308 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139945733527360)>', '<ExcThread(monitor, started 139945217857280)>']
[2025-11-27 05:29:15] 2025-11-27 10:28:48,867 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 05:29:15] 2025-11-27 10:28:48,867 | INFO     | [monitor] control thread has ended
[2025-11-27 05:29:15] 2025-11-27 10:28:53,333 | INFO     | all workflow threads have been joined
[2025-11-27 05:29:15] 2025-11-27 10:28:53,333 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 05:29:15] 2025-11-27 10:28:53,333 | INFO     | traces error code: 0
[2025-11-27 05:29:15] 2025-11-27 10:28:53,334 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 05:29:15] 2025-11-27 10:28:53,971 [wrapper] ==== pilot stdout END ====
[2025-11-27 05:29:15] 2025-11-27 10:28:53,996 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 05:29:15] 2025-11-27 10:28:54,067 [wrapper] pilotpid: 507563
[2025-11-27 05:29:15] 2025-11-27 10:28:54,083 [wrapper] Pilot exit status: 0
[2025-11-27 05:29:15] 2025-11-27 10:28:54,298 [wrapper] pandaids: 6896577824
[2025-11-27 05:29:15] 2025-11-27 10:28:54,784 [wrapper] cleanup supervisor_pilot  718728 507564
[2025-11-27 05:29:15] 2025-11-27 10:28:54,832 [wrapper] Test setup, not cleaning
[2025-11-27 05:29:15] 2025-11-27 10:28:54,857 [wrapper] apfmon messages muted
[2025-11-27 05:29:15] 2025-11-27 10:28:54,861 [wrapper] ==== wrapper stdout END ====
[2025-11-27 05:29:15] 2025-11-27 10:28:54,865 [wrapper] ==== wrapper stderr END ====
[2025-11-27 05:29:15]  *** Error codes and diagnostics ***
[2025-11-27 05:29:15]     "exeErrorCode": 0,
[2025-11-27 05:29:15]     "exeErrorDiag": "",
[2025-11-27 05:29:15]     "pilotErrorCode": 0,
[2025-11-27 05:29:15]     "pilotErrorDiag": "",
[2025-11-27 05:29:15]  *** Listing of results directory ***
[2025-11-27 05:29:15] total 1328712
[2025-11-27 05:29:15] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 00:12 pilot3.tar.gz
[2025-11-27 05:29:15] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 00:25 queuedata.json
[2025-11-27 05:29:15] -rwx------. 1 boincer umatlas     36292 Nov 25 00:26 runpilot2-wrapper.sh
[2025-11-27 05:29:15] -rw-r--r--. 1 boincer umatlas       100 Nov 26 09:47 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 05:29:15] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 09:47 run_atlas
[2025-11-27 05:29:15] -rw-r--r--. 1 boincer umatlas       105 Nov 26 09:47 job.xml
[2025-11-27 05:29:15] -rw-r--r--. 2 boincer umatlas 412027301 Nov 26 09:47 EVNT.47483658._002102.pool.root.1
[2025-11-27 05:29:15] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 09:47 start_atlas.sh
[2025-11-27 05:29:15] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 09:47 shared
[2025-11-27 05:29:15] -rw-r--r--. 2 boincer umatlas    590102 Nov 26 09:47 input.tar.gz
[2025-11-27 05:29:15] -rw-r--r--. 1 boincer umatlas         0 Nov 26 09:47 boinc_lockfile
[2025-11-27 05:29:15] -rw-r--r--. 1 boincer umatlas      2783 Nov 26 09:47 pandaJob.out
[2025-11-27 05:29:15] -rw-------. 1 boincer umatlas        57 Nov 26 09:47 setup.sh.local
[2025-11-27 05:29:15] -rw-------. 1 boincer umatlas    992360 Nov 26 09:47 agis_schedconf.cvmfs.json
[2025-11-27 05:29:15] drwx------. 5 boincer umatlas      4096 Nov 26 09:47 pilot3
[2025-11-27 05:29:15] -rw-r--r--. 1 boincer umatlas       533 Nov 27 05:03 boinc_task_state.xml
[2025-11-27 05:29:15] -rw-------. 1 boincer umatlas 921119966 Nov 27 05:25 HITS.47556161._000854.pool.root.1
[2025-11-27 05:29:15] -rw-------. 1 boincer umatlas      1066 Nov 27 05:27 memory_monitor_summary.json
[2025-11-27 05:29:15] -rw-------. 1 boincer umatlas   1516240 Nov 27 05:27 agis_ddmendpoints.agis.ALL.json
[2025-11-27 05:29:15] -rw-------. 1 boincer umatlas   2406086 Nov 27 05:27 log.47556161._000854.job.log.tgz.1
[2025-11-27 05:29:15] -rw-------. 1 boincer umatlas      8643 Nov 27 05:27 heartbeat.json
[2025-11-27 05:29:15] -rw-------. 1 boincer umatlas        95 Nov 27 05:28 pilot_heartbeat.json
[2025-11-27 05:29:15] -rw-r--r--. 1 boincer umatlas      6845 Nov 27 05:28 init_data.xml
[2025-11-27 05:29:15] -rw-------. 1 boincer umatlas      5009 Nov 27 05:28 pilotlog.txt
[2025-11-27 05:29:15] -rw-------. 1 boincer umatlas   9357421 Nov 27 05:28 log.47556161._000854.job.log.1
[2025-11-27 05:29:15] -rw-------. 1 boincer umatlas       353 Nov 27 05:28 output.list
[2025-11-27 05:29:15] -rw-r--r--. 1 boincer umatlas       620 Nov 27 05:28 runtime_log
[2025-11-27 05:29:15] -rw-------. 1 boincer umatlas  11786240 Nov 27 05:28 result.tar.gz
[2025-11-27 05:29:15] -rw-r--r--. 1 boincer umatlas      9343 Nov 27 05:28 runtime_log.err
[2025-11-27 05:29:15] -rw-------. 1 boincer umatlas       664 Nov 27 05:28 c3zLDmak0h8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm4LJKDmHrRQ9n.diag
[2025-11-27 05:29:15] -rw-r--r--. 1 boincer umatlas        29 Nov 27 05:29 wrapper_checkpoint.txt
[2025-11-27 05:29:15] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 05:29 boinc_mmap_file
[2025-11-27 05:29:15] -rw-r--r--. 1 boincer umatlas     21765 Nov 27 05:29 stderr.txt
[2025-11-27 05:29:15] HITS file was successfully produced:
[2025-11-27 05:29:15] -rw-------. 1 boincer umatlas 921119966 Nov 27 05:25 shared/HITS.pool.root.1
[2025-11-27 05:29:15]  *** Contents of shared directory: ***
[2025-11-27 05:29:15] total 1314020
[2025-11-27 05:29:15] -rw-r--r--. 2 boincer umatlas 412027301 Nov 26 09:47 ATLAS.root_0
[2025-11-27 05:29:15] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 09:47 start_atlas.sh
[2025-11-27 05:29:15] -rw-r--r--. 2 boincer umatlas    590102 Nov 26 09:47 input.tar.gz
[2025-11-27 05:29:15] -rw-------. 1 boincer umatlas 921119966 Nov 27 05:25 HITS.pool.root.1
[2025-11-27 05:29:15] -rw-------. 1 boincer umatlas  11786240 Nov 27 05:28 result.tar.gz
05:29:17 (503346): run_atlas exited; CPU time 242286.894352
05:29:17 (503346): called boinc_finish(0)

</stderr_txt>
]]>

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