Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
09:11:43 (340970): wrapper (7.7.26015): starting
09:11:43 (340970): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 09:11:43] Arguments: --nthreads 8
[2025-11-26 09:11:43] Threads: 8
[2025-11-26 09:11:43] Checking for CVMFS
[2025-11-26 09:11:43] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 09:11:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 09:11:44] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 09:11:44] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 09:11:44] 2.13.3.0 12500 30154 223980 153323 3 365 28542472 32503808 49320 16776704 0 195321830 99.516 233907258 37882 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 09:11:44] CVMFS is ok
[2025-11-26 09:11:44] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 09:11:44] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 09:11:44] Further information can be found at the LHC@home message board.
[2025-11-26 09:11:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 09:11:44] Checking for apptainer binary...
[2025-11-26 09:11:44] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 09:11:44] Running /usr/bin/apptainer --version
[2025-11-26 09:11:44] apptainer version 1.4.4-1.el9
[2025-11-26 09:11:44] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 09:11:44] c7-7-36.aglt2.org
[2025-11-26 09:11:44] apptainer works
[2025-11-26 09:11:44] Set ATHENA_PROC_NUMBER=8
[2025-11-26 09:11:44] Set ATHENA_CORE_NUMBER=8
[2025-11-26 09:11:44] Starting ATLAS job with PandaID=6896577506
[2025-11-26 09:11:44] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
13:41:44 (2490019): wrapper (7.7.26015): starting
13:41:44 (2490019): wrapper: running run_atlas (--nthreads 11)
[2025-11-26 13:41:44] Arguments: --nthreads 11
[2025-11-26 13:41:44] Threads: 11
[2025-11-26 13:41:44] This job has been restarted, cleaning up previous attempt
[2025-11-26 13:41:44] Checking for CVMFS
[2025-11-26 13:41:44] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 13:41:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 13:41:44] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 13:41:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 13:41:45] 2.13.3.0 12500 30424 236052 153331 2 797 20073462 32503809 41432 16776704 0 199050266 99.520 236340596 37794 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 13:41:45] CVMFS is ok
[2025-11-26 13:41:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 13:41:45] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 13:41:45] Further information can be found at the LHC@home message board.
[2025-11-26 13:41:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 13:41:45] Checking for apptainer binary...
[2025-11-26 13:41:45] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 13:41:45] Running /usr/bin/apptainer --version
[2025-11-26 13:41:45] apptainer version 1.4.4-1.el9
[2025-11-26 13:41:45] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 13:41:45] c7-7-36.aglt2.org
[2025-11-26 13:41:45] apptainer works
[2025-11-26 13:41:45] Set ATHENA_PROC_NUMBER=11
[2025-11-26 13:41:45] Set ATHENA_CORE_NUMBER=11
[2025-11-26 13:41:45] Starting ATLAS job with PandaID=6896577506
[2025-11-26 13:41:45] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 23:43:06]  *** The last 200 lines of the pilot log: ***
[2025-11-26 23:43:06] 2025-11-27 04:42:11,974 | INFO     | intersect: -4214915035.2930193
[2025-11-26 23:43:06] 2025-11-27 04:42:11,974 | INFO     | chi2: 11.766018705880505
[2025-11-26 23:43:06] 2025-11-27 04:42:11,975 | INFO     | sum of square deviations: 62072603263.44605
[2025-11-26 23:43:06] 2025-11-27 04:42:11,983 | INFO     | sum of deviations: 372138212832.7835
[2025-11-26 23:43:06] 2025-11-27 04:42:11,983 | INFO     | mean x: 1764200354.5692308
[2025-11-26 23:43:06] 2025-11-27 04:42:11,984 | INFO     | mean y: 3339996.721367521
[2025-11-26 23:43:06] 2025-11-27 04:42:11,984 | INFO     | intersect: -10573409366.310076
[2025-11-26 23:43:06] 2025-11-27 04:42:11,984 | INFO     | chi2: 8.636395556198286
[2025-11-26 23:43:06] 2025-11-27 04:42:11,984 | INFO     | current chi2=8.636395556198286 (change=26.59882860901856 %)
[2025-11-26 23:43:06] 2025-11-27 04:42:11,985 | INFO     | sum of square deviations: 60494676906.0276
[2025-11-26 23:43:06] 2025-11-27 04:42:11,993 | INFO     | sum of deviations: 603975239072.7102
[2025-11-26 23:43:06] 2025-11-27 04:42:11,993 | INFO     | mean x: 1764200202.0827587
[2025-11-26 23:43:06] 2025-11-27 04:42:11,993 | INFO     | mean y: 3362405.3810344827
[2025-11-26 23:43:06] 2025-11-27 04:42:11,993 | INFO     | intersect: -17610306983.74979
[2025-11-26 23:43:06] 2025-11-27 04:42:11,994 | INFO     | chi2: 5.2784120301182265
[2025-11-26 23:43:06] 2025-11-27 04:42:11,994 | INFO     | current chi2=5.2784120301182265 (change=38.881770806225475 %)
[2025-11-26 23:43:06] 2025-11-27 04:42:11,995 | INFO     | sum of square deviations: 58943727798.393005
[2025-11-26 23:43:06] 2025-11-27 04:42:12,002 | INFO     | sum of deviations: 800053865178.2291
[2025-11-26 23:43:06] 2025-11-27 04:42:12,002 | INFO     | mean x: 1764200049.5965219
[2025-11-26 23:43:06] 2025-11-27 04:42:12,003 | INFO     | mean y: 3381657.914782609
[2025-11-26 23:43:06] 2025-11-27 04:42:12,003 | INFO     | intersect: -23942424305.613056
[2025-11-26 23:43:06] 2025-11-27 04:42:12,003 | INFO     | chi2: 2.677226577667863
[2025-11-26 23:43:06] 2025-11-27 04:42:12,003 | INFO     | current chi2=2.677226577667863 (change=49.27969695446647 %)
[2025-11-26 23:43:06] 2025-11-27 04:42:12,004 | INFO     | sum of square deviations: 57419488549.25625
[2025-11-26 23:43:06] 2025-11-27 04:42:12,010 | INFO     | sum of deviations: 905288188719.5039
[2025-11-26 23:43:06] 2025-11-27 04:42:12,010 | INFO     | mean x: 1764199897.108772
[2025-11-26 23:43:06] 2025-11-27 04:42:12,010 | INFO     | mean y: 3392171.3789473684
[2025-11-26 23:43:06] 2025-11-27 04:42:12,010 | INFO     | intersect: -27811368456.84721
[2025-11-26 23:43:06] 2025-11-27 04:42:12,011 | INFO     | chi2: 1.800154626624156
[2025-11-26 23:43:06] 2025-11-27 04:42:12,011 | INFO     | current chi2=1.800154626624156 (change=32.76046780499714 %)
[2025-11-26 23:43:06] 2025-11-27 04:42:12,011 | INFO     | sum of square deviations: 55921622109.88677
[2025-11-26 23:43:06] 2025-11-27 04:42:12,016 | INFO     | sum of deviations: 898794100799.4619
[2025-11-26 23:43:06] 2025-11-27 04:42:12,017 | INFO     | mean x: 1764199744.6141593
[2025-11-26 23:43:06] 2025-11-27 04:42:12,017 | INFO     | mean y: 3391503.667256637
[2025-11-26 23:43:06] 2025-11-27 04:42:12,017 | INFO     | intersect: -28351514224.483738
[2025-11-26 23:43:06] 2025-11-27 04:42:12,017 | INFO     | chi2: 1.7699938902045198
[2025-11-26 23:43:06] 2025-11-27 04:42:12,017 | INFO     | current chi2=1.7699938902045198 (change=1.6754525402185472 %)
[2025-11-26 23:43:06] 2025-11-27 04:42:12,017 | INFO     | right removable region: 564
[2025-11-26 23:43:06] 2025-11-27 04:42:12,018 | INFO     | sum of square deviations: 62072186761.97291
[2025-11-26 23:43:06] 2025-11-27 04:42:12,024 | INFO     | sum of deviations: 11646901169.950684
[2025-11-26 23:43:06] 2025-11-27 04:42:12,024 | INFO     | mean x: 1764200659.5623932
[2025-11-26 23:43:06] 2025-11-27 04:42:12,024 | INFO     | mean y: 3332426.2068376066
[2025-11-26 23:43:06] 2025-11-27 04:42:12,024 | INFO     | intersect: -327692978.2094434
[2025-11-26 23:43:06] 2025-11-27 04:42:12,024 | INFO     | chi2: 10.289735571761966
[2025-11-26 23:43:06] 2025-11-27 04:42:12,024 | INFO     | current chi2=10.289735571761966 (change=12.547006519552035 %)
[2025-11-26 23:43:06] 2025-11-27 04:42:12,024 | INFO     | left removable region: 10
[2025-11-26 23:43:06] 2025-11-27 04:42:12,025 | INFO     | sum of square deviations: 52718034013.90084
[2025-11-26 23:43:06] 2025-11-27 04:42:12,030 | INFO     | sum of deviations: 701319877002.9043
[2025-11-26 23:43:06] 2025-11-27 04:42:12,030 | INFO     | mean x: 1764200019.1281588
[2025-11-26 23:43:06] 2025-11-27 04:42:12,030 | INFO     | mean y: 3411441.2689530686
[2025-11-26 23:43:06] 2025-11-27 04:42:12,030 | INFO     | intersect: -23466138657.98618
[2025-11-26 23:43:06] 2025-11-27 04:42:12,031 | INFO     | chi2: 0.1650952039623007
[2025-11-26 23:43:06] 2025-11-27 04:42:12,031 | INFO     | current memory leak: 13.30 B/s (using 554 data points, chi2=0.17)
[2025-11-26 23:43:06] 2025-11-27 04:42:12,032 | INFO     | could have reported an average CPU frequency of 3205 MHz (23 samples)
[2025-11-26 23:43:06] 2025-11-27 04:42:12,032 | INFO     | ..............................
[2025-11-26 23:43:06] 2025-11-27 04:42:12,032 | INFO     | . Timing measurements:
[2025-11-26 23:43:06] 2025-11-27 04:42:12,032 | INFO     | . get job = 0 s
[2025-11-26 23:43:06] 2025-11-27 04:42:12,032 | INFO     | . initial setup = 2 s
[2025-11-26 23:43:06] 2025-11-27 04:42:12,032 | INFO     | . payload setup = 5 s
[2025-11-26 23:43:06] 2025-11-27 04:42:12,032 | INFO     | . stage-in = 0 s
[2025-11-26 23:43:06] 2025-11-27 04:42:12,032 | INFO     | . payload execution = 35977 s
[2025-11-26 23:43:06] 2025-11-27 04:42:12,032 | INFO     | . stage-out = 4 s
[2025-11-26 23:43:06] 2025-11-27 04:42:12,032 | INFO     | . log creation = 0 s
[2025-11-26 23:43:06] 2025-11-27 04:42:12,032 | INFO     | ..............................
[2025-11-26 23:43:06] 2025-11-27 04:42:12,479 | INFO     | 
[2025-11-26 23:43:06] 2025-11-27 04:42:12,479 | INFO     | job summary report
[2025-11-26 23:43:06] 2025-11-27 04:42:12,479 | INFO     | --------------------------------------------------
[2025-11-26 23:43:06] 2025-11-27 04:42:12,479 | INFO     | PanDA job id: 6896577506
[2025-11-26 23:43:06] 2025-11-27 04:42:12,480 | INFO     | task id: 47556161
[2025-11-26 23:43:06] 2025-11-27 04:42:12,480 | INFO     | errors: (none)
[2025-11-26 23:43:06] 2025-11-27 04:42:12,480 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 23:43:06] 2025-11-27 04:42:12,480 | INFO     | pilot state: finished 
[2025-11-26 23:43:06] 2025-11-27 04:42:12,480 | INFO     | transexitcode: 0
[2025-11-26 23:43:06] 2025-11-27 04:42:12,480 | INFO     | exeerrorcode: 0
[2025-11-26 23:43:06] 2025-11-27 04:42:12,480 | INFO     | exeerrordiag: 
[2025-11-26 23:43:06] 2025-11-27 04:42:12,480 | INFO     | exitcode: 0
[2025-11-26 23:43:06] 2025-11-27 04:42:12,480 | INFO     | exitmsg: OK
[2025-11-26 23:43:06] 2025-11-27 04:42:12,480 | INFO     | cpuconsumptiontime: 199624 s
[2025-11-26 23:43:06] 2025-11-27 04:42:12,480 | INFO     | nevents: 1000
[2025-11-26 23:43:06] 2025-11-27 04:42:12,480 | INFO     | neventsw: 0
[2025-11-26 23:43:06] 2025-11-27 04:42:12,481 | INFO     | pid: 2564685
[2025-11-26 23:43:06] 2025-11-27 04:42:12,481 | INFO     | pgrp: 2564685
[2025-11-26 23:43:06] 2025-11-27 04:42:12,481 | INFO     | corecount: 11
[2025-11-26 23:43:06] 2025-11-27 04:42:12,481 | INFO     | event service: False
[2025-11-26 23:43:06] 2025-11-27 04:42:12,481 | INFO     | sizes: {0: 2284091, 1: 2284290, 5: 2284552, 11: 2284608, 35987: 2325913, 35988: 2325912, 35994: 2335146, 36002: 2335336}
[2025-11-26 23:43:06] 2025-11-27 04:42:12,481 | INFO     | --------------------------------------------------
[2025-11-26 23:43:06] 2025-11-27 04:42:12,481 | INFO     | 
[2025-11-26 23:43:06] 2025-11-27 04:42:12,481 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-26 23:43:06] 2025-11-27 04:42:12,509 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 23:43:06] 2025-11-27 04:42:12,510 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 23:43:06] 2025-11-27 04:42:12,511 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 23:43:06] 2025-11-27 04:42:12,511 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 23:43:06] 2025-11-27 04:42:12,511 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 23:43:06] 2025-11-27 04:42:12,511 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 23:43:06] 2025-11-27 04:42:12,512 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 23:43:06] 2025-11-27 04:42:12,512 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 23:43:06] 2025-11-27 04:42:12,512 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 23:43:06] 2025-11-27 04:42:12,512 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 23:43:06] 2025-11-27 04:42:12,512 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 23:43:06] 2025-11-27 04:42:12,512 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 23:43:06] 2025-11-27 04:42:12,512 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 23:43:06] 2025-11-27 04:42:12,512 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 23:43:06] 2025-11-27 04:42:12,512 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 23:43:06] 2025-11-27 04:42:12,512 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 23:43:06] 2025-11-27 04:42:12,513 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 23:43:06] 2025-11-27 04:42:12,513 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 23:43:06] 2025-11-27 04:42:12,513 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 23:43:06] 2025-11-27 04:42:12,516 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 23:43:06] 2025-11-27 04:42:12,517 | INFO     | job 6896577506 has completed (purged errors)
[2025-11-26 23:43:06] 2025-11-27 04:42:12,517 | INFO     | overall cleanup function is called
[2025-11-26 23:43:06] 2025-11-27 04:42:13,560 | INFO     | --- collectZombieJob: --- 10, [2564685]
[2025-11-26 23:43:06] 2025-11-27 04:42:13,560 | INFO     | zombie collector waiting for pid 2564685
[2025-11-26 23:43:06] 2025-11-27 04:42:13,561 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 23:43:06] 2025-11-27 04:42:13,561 | INFO     | collected zombie processes
[2025-11-26 23:43:06] 2025-11-27 04:42:13,561 | INFO     | will attempt to kill all subprocesses of pid=2564685
[2025-11-26 23:43:06] 2025-11-27 04:42:14,475 | INFO     | process IDs to be killed: [2564685] (in reverse order)
[2025-11-26 23:43:06] 2025-11-27 04:42:14,725 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 23:43:06] 2025-11-27 04:42:14,725 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 23:43:06] 2025-11-27 04:42:14,757 | INFO     | did not find any defunct processes belonging to 2564685
[2025-11-26 23:43:06] 2025-11-27 04:42:14,790 | INFO     | did not find any defunct processes belonging to 2564685
[2025-11-26 23:43:06] 2025-11-27 04:42:14,801 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 23:43:06] 2025-11-27 04:42:14,809 | INFO     | ready for new job
[2025-11-26 23:43:06] 2025-11-27 04:42:14,809 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 23:43:06] 2025-11-27 04:42:14,817 | INFO     | ***************************************
[2025-11-26 23:43:06] 2025-11-27 04:42:14,818 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 23:43:06] 2025-11-27 04:42:14,818 | INFO     | ***************************************
[2025-11-26 23:43:06] 2025-11-27 04:42:14,818 | INFO     | 
[2025-11-26 23:43:06] 2025-11-27 04:42:14,823 | INFO     | architecture information:
[2025-11-26 23:43:06] 2025-11-27 04:42:14,824 | INFO     | executing command: cat /etc/os-release
[2025-11-26 23:43:06] 2025-11-27 04:42:14,850 | INFO     | cat /etc/os-release:
[2025-11-26 23:43:06] NAME="CentOS Linux"
[2025-11-26 23:43:06] VERSION="7 (Core)"
[2025-11-26 23:43:06] ID="centos"
[2025-11-26 23:43:06] ID_LIKE="rhel fedora"
[2025-11-26 23:43:06] VERSION_ID="7"
[2025-11-26 23:43:06] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 23:43:06] ANSI_COLOR="0;31"
[2025-11-26 23:43:06] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 23:43:06] HOME_URL="https://www.centos.org/"
[2025-11-26 23:43:06] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 23:43:06] 
[2025-11-26 23:43:06] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 23:43:06] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 23:43:06] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 23:43:06] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 23:43:06] 
[2025-11-26 23:43:06] 2025-11-27 04:42:14,850 | INFO     | ***************************************
[2025-11-26 23:43:06] 2025-11-27 04:42:15,358 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-26 23:43:06] 2025-11-27 04:42:15,383 | INFO     | sufficient remaining disk space (84950384640 B)
[2025-11-26 23:43:06] 2025-11-27 04:42:15,383 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 23:43:06] 2025-11-27 04:42:15,384 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 23:43:06] 2025-11-27 04:42:15,384 | INFO     | update_server=False
[2025-11-26 23:43:06] 2025-11-27 04:42:15,384 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 23:43:06] 2025-11-27 04:42:15,384 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 23:43:06] 2025-11-27 04:42:15,384 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 23:43:06] 2025-11-27 04:42:15,395 | INFO     | all data control threads have been joined
[2025-11-26 23:43:06] 2025-11-27 04:42:15,396 | INFO     | all job control threads have been joined
[2025-11-26 23:43:06] 2025-11-27 04:42:15,644 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 23:43:06] 2025-11-27 04:42:15,644 | INFO     | aborting loop
[2025-11-26 23:43:06] 2025-11-27 04:42:16,393 | INFO     | [job] retrieve thread has finished
[2025-11-26 23:43:06] 2025-11-27 04:42:16,402 | INFO     | [data] control thread has finished
[2025-11-26 23:43:06] 2025-11-27 04:42:16,406 | INFO     | [job] control thread has finished
[2025-11-26 23:43:06] 2025-11-27 04:42:16,409 | INFO     | all payload control threads have been joined
[2025-11-26 23:43:06] 2025-11-27 04:42:16,636 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 23:43:06] 2025-11-27 04:42:16,650 | INFO     | [job] job monitor thread has finished
[2025-11-26 23:43:06] 2025-11-27 04:42:16,970 | INFO     | [payload] validate_post thread has finished
[2025-11-26 23:43:06] 2025-11-27 04:42:17,103 | INFO     | [payload] failed_post thread has finished
[2025-11-26 23:43:06] 2025-11-27 04:42:17,131 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 23:43:06] 2025-11-27 04:42:17,173 | INFO     | [data] copytool_in thread has finished
[2025-11-26 23:43:06] 2025-11-27 04:42:17,186 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 23:43:06] 2025-11-27 04:42:17,393 | INFO     | [data] copytool_out thread has finished
[2025-11-26 23:43:06] 2025-11-27 04:42:17,415 | INFO     | [payload] control thread has finished
[2025-11-26 23:43:06] 2025-11-27 04:42:17,443 | INFO     | [job] validate thread has finished
[2025-11-26 23:43:06] 2025-11-27 04:42:17,451 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 23:43:06] 2025-11-27 04:42:17,459 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 23:43:06] 2025-11-27 04:42:18,135 | INFO     | [job] queue monitor thread has finished
[2025-11-26 23:43:06] 2025-11-27 04:42:19,402 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 23:43:06] 2025-11-27 04:42:46,880 | INFO     | PID=2516221 has CPU usage=11.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-26 23:43:06] 2025-11-27 04:42:46,880 | INFO     | .. there are 76 such processes running
[2025-11-26 23:43:06] 2025-11-27 04:42:46,880 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 23:43:06] 2025-11-27 04:42:46,880 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 23:43:06] 2025-11-27 04:42:46,880 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 23:43:06] 2025-11-27 04:42:59,327 | INFO     | [monitor] cgroup control has ended
[2025-11-26 23:43:06] 2025-11-27 04:43:01,020 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140255013087040)>', '<ExcThread(monitor, started 140254656829184)>']
[2025-11-26 23:43:06] 2025-11-27 04:43:01,991 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 23:43:06] 2025-11-27 04:43:01,992 | INFO     | [monitor] control thread has ended
[2025-11-26 23:43:06] 2025-11-27 04:43:06,046 | INFO     | all workflow threads have been joined
[2025-11-26 23:43:06] 2025-11-27 04:43:06,047 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 23:43:06] 2025-11-27 04:43:06,047 | INFO     | traces error code: 0
[2025-11-26 23:43:06] 2025-11-27 04:43:06,047 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 23:43:06] 2025-11-27 04:43:06,300 [wrapper] ==== pilot stdout END ====
[2025-11-26 23:43:06] 2025-11-27 04:43:06,307 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 23:43:06] 2025-11-27 04:43:06,310 [wrapper] pilotpid: 2516221
[2025-11-26 23:43:06] 2025-11-27 04:43:06,315 [wrapper] Pilot exit status: 0
[2025-11-26 23:43:06] 2025-11-27 04:43:06,345 [wrapper] pandaids: 6896577506 6896577506
[2025-11-26 23:43:06] 2025-11-27 04:43:06,540 [wrapper] cleanup supervisor_pilot 2913264 2516222
[2025-11-26 23:43:06] 2025-11-27 04:43:06,547 [wrapper] Test setup, not cleaning
[2025-11-26 23:43:06] 2025-11-27 04:43:06,554 [wrapper] apfmon messages muted
[2025-11-26 23:43:06] 2025-11-27 04:43:06,558 [wrapper] ==== wrapper stdout END ====
[2025-11-26 23:43:06] 2025-11-27 04:43:06,562 [wrapper] ==== wrapper stderr END ====
[2025-11-26 23:43:06]  *** Error codes and diagnostics ***
[2025-11-26 23:43:06]     "exeErrorCode": 0,
[2025-11-26 23:43:06]     "exeErrorDiag": "",
[2025-11-26 23:43:06]     "pilotErrorCode": 0,
[2025-11-26 23:43:06]     "pilotErrorDiag": "",
[2025-11-26 23:43:06]  *** Listing of results directory ***
[2025-11-26 23:43:06] total 1713636
[2025-11-26 23:43:06] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-26 23:43:06] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 00:11 queuedata.json
[2025-11-26 23:43:06] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 00:12 pilot3.tar.gz
[2025-11-26 23:43:06] -rwx------. 1 boincer umatlas     36292 Nov 25 00:15 runpilot2-wrapper.sh
[2025-11-26 23:43:06] -rw-r--r--. 1 boincer umatlas       100 Nov 26 09:11 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 23:43:06] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 09:11 run_atlas
[2025-11-26 23:43:06] -rw-r--r--. 1 boincer umatlas       105 Nov 26 09:11 job.xml
[2025-11-26 23:43:06] -rw-r--r--. 3 boincer umatlas 409129247 Nov 26 09:11 EVNT.47483658._002093.pool.root.1
[2025-11-26 23:43:06] -rw-r--r--. 3 boincer umatlas 409129247 Nov 26 09:11 ATLAS.root_0
[2025-11-26 23:43:06] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 09:11 start_atlas.sh
[2025-11-26 23:43:06] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 09:11 shared
[2025-11-26 23:43:06] -rw-r--r--. 2 boincer umatlas    590102 Nov 26 09:11 input.tar.gz
[2025-11-26 23:43:06] -rw-r--r--. 1 boincer umatlas         0 Nov 26 09:11 boinc_lockfile
[2025-11-26 23:43:06] -rw-r--r--. 1 boincer umatlas      2784 Nov 26 13:41 pandaJob.out
[2025-11-26 23:43:06] -rw-------. 1 boincer umatlas        57 Nov 26 13:41 setup.sh.local
[2025-11-26 23:43:06] -rw-------. 1 boincer umatlas    991522 Nov 26 13:41 agis_schedconf.cvmfs.json
[2025-11-26 23:43:06] -rw-r--r--. 1 boincer umatlas       533 Nov 26 23:20 boinc_task_state.xml
[2025-11-26 23:43:06] -rw-r--r--. 1 boincer umatlas      6948 Nov 26 23:36 init_data.xml
[2025-11-26 23:43:06] -rw-------. 1 boincer umatlas 919727047 Nov 26 23:41 HITS.47556161._000762.pool.root.1
[2025-11-26 23:43:06] -rw-------. 1 boincer umatlas        96 Nov 26 23:41 pilot_heartbeat.json
[2025-11-26 23:43:06] -rw-------. 1 boincer umatlas      1073 Nov 26 23:41 memory_monitor_summary.json
[2025-11-26 23:43:06] -rw-------. 1 boincer umatlas   1516240 Nov 26 23:42 agis_ddmendpoints.agis.ALL.json
[2025-11-26 23:43:06] -rw-------. 1 boincer umatlas   2145710 Nov 26 23:42 log.47556161._000762.job.log.tgz.1
[2025-11-26 23:43:06] -rw-------. 1 boincer umatlas      8647 Nov 26 23:42 heartbeat.json
[2025-11-26 23:43:06] -rw-r--r--. 1 boincer umatlas        29 Nov 26 23:43 wrapper_checkpoint.txt
[2025-11-26 23:43:06] -rw-------. 1 boincer umatlas      4825 Nov 26 23:43 pilotlog.txt
[2025-11-26 23:43:06] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 23:43 boinc_mmap_file
[2025-11-26 23:43:06] -rw-------. 1 boincer umatlas   4278873 Nov 26 23:43 log.47556161._000762.job.log.1
[2025-11-26 23:43:06] -rw-------. 1 boincer umatlas       353 Nov 26 23:43 output.list
[2025-11-26 23:43:06] -rw-r--r--. 1 boincer umatlas       620 Nov 26 23:43 runtime_log
[2025-11-26 23:43:06] -rw-------. 1 boincer umatlas   6440960 Nov 26 23:43 result.tar.gz
[2025-11-26 23:43:06] -rw-r--r--. 1 boincer umatlas      9425 Nov 26 23:43 runtime_log.err
[2025-11-26 23:43:06] -rw-------. 1 boincer umatlas       790 Nov 26 23:43 74HLDmdZ0h8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm78LKDmw2lHHn.diag
[2025-11-26 23:43:06] -rw-r--r--. 1 boincer umatlas     23303 Nov 26 23:43 stderr.txt
[2025-11-26 23:43:06] HITS file was successfully produced:
[2025-11-26 23:43:06] -rw-------. 1 boincer umatlas 919727047 Nov 26 23:41 shared/HITS.pool.root.1
[2025-11-26 23:43:06]  *** Contents of shared directory: ***
[2025-11-26 23:43:06] total 1304612
[2025-11-26 23:43:06] -rw-r--r--. 3 boincer umatlas 409129247 Nov 26 09:11 ATLAS.root_0
[2025-11-26 23:43:06] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 09:11 start_atlas.sh
[2025-11-26 23:43:06] -rw-r--r--. 2 boincer umatlas    590102 Nov 26 09:11 input.tar.gz
[2025-11-26 23:43:06] -rw-------. 1 boincer umatlas 919727047 Nov 26 23:41 HITS.pool.root.1
[2025-11-26 23:43:06] -rw-------. 1 boincer umatlas   6440960 Nov 26 23:43 result.tar.gz
23:43:28 (2490019): run_atlas exited; CPU time 200113.959905
23:43:28 (2490019): called boinc_finish(0)

</stderr_txt>
]]>

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