Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
11:11:41 (2557863): wrapper (7.7.26015): starting
11:11:41 (2557863): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 11:11:41] Arguments: --nthreads 8
[2025-11-26 11:11:41] Threads: 8
[2025-11-26 11:11:41] Checking for CVMFS
[2025-11-26 11:11:41] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 11:11:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 11:11:41] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 11:11:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 11:11:41] 2.13.3.0 12460 30273 351524 153326 2 664 32878431 32935937 60663 16776704 0 305033511 99.640 283988403 37318 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 11:11:41] CVMFS is ok
[2025-11-26 11:11:41] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 11:11:41] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 11:11:41] Further information can be found at the LHC@home message board.
[2025-11-26 11:11:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 11:11:41] Checking for apptainer binary...
[2025-11-26 11:11:41] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 11:11:41] Running /usr/bin/apptainer --version
[2025-11-26 11:11:41] apptainer version 1.4.4-1.el9
[2025-11-26 11:11:41] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 11:11:41] c7-6-31.aglt2.org
[2025-11-26 11:11:41] apptainer works
[2025-11-26 11:11:41] Set ATHENA_PROC_NUMBER=8
[2025-11-26 11:11:41] Set ATHENA_CORE_NUMBER=8
[2025-11-26 11:11:42] Starting ATLAS job with PandaID=6891601605
[2025-11-26 11:11:42] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
23:20:08 (2557863): BOINC client no longer exists - exiting
23:20:08 (2557863): timer handler: client dead, exiting
23:21:23 (1633919): wrapper (7.7.26015): starting
23:21:23 (1633919): wrapper: running run_atlas (--nthreads 11)
[2025-11-26 23:21:23] Arguments: --nthreads 11
[2025-11-26 23:21:23] Threads: 11
[2025-11-26 23:21:23] This job has been restarted, cleaning up previous attempt
[2025-11-26 23:21:23] Checking for CVMFS
[2025-11-26 23:21:23] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 23:21:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 23:21:23] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 23:21:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 23:21:23] 2.13.3.0 12460 31002 334584 153347 2 386 26515591 32935936 54681 16776704 0 323441992 99.643 298805760 36890 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 23:21:23] CVMFS is ok
[2025-11-26 23:21:23] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 23:21:23] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 23:21:23] Further information can be found at the LHC@home message board.
[2025-11-26 23:21:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 23:21:23] Checking for apptainer binary...
[2025-11-26 23:21:23] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 23:21:23] Running /usr/bin/apptainer --version
[2025-11-26 23:21:23] apptainer version 1.4.4-1.el9
[2025-11-26 23:21:23] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 23:21:23] c7-6-31.aglt2.org
[2025-11-26 23:21:23] apptainer works
[2025-11-26 23:21:23] Set ATHENA_PROC_NUMBER=11
[2025-11-26 23:21:23] Set ATHENA_CORE_NUMBER=11
[2025-11-26 23:21:23] Starting ATLAS job with PandaID=6891601605
[2025-11-26 23:21:23] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 12:02:19]  *** The last 200 lines of the pilot log: ***
[2025-11-27 12:02:19] 2025-11-27 17:01:41,732 | INFO     | time since job start (45607s) is within the limit (172800.0s)
[2025-11-27 12:02:19] 2025-11-27 17:01:42,043 | INFO     | monitor loop #1760: job 0:6891601605 is in state 'finished'
[2025-11-27 12:02:19] 2025-11-27 17:01:42,044 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 12:02:19] 2025-11-27 17:01:43,011 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 12:02:19] 2025-11-27 17:01:43,025 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3420.3160833333327
[2025-11-27 12:02:19] 2025-11-27 17:01:43,041 | INFO     | using path: /tmp/boinchome/slots/7/PanDA_Pilot-6891601605/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 12:02:19] 2025-11-27 17:01:43,041 | INFO     | extracted standard info from prmon json
[2025-11-27 12:02:19] 2025-11-27 17:01:43,042 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 12:02:19] 2025-11-27 17:01:43,042 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 12:02:19] 2025-11-27 17:01:43,052 | INFO     | fitting pss+swap vs Time
[2025-11-27 12:02:19] 2025-11-27 17:01:43,053 | INFO     | sum of square deviations: 129249871903.97844
[2025-11-27 12:02:19] 2025-11-27 17:01:43,069 | INFO     | sum of deviations: 1430724950574.8699
[2025-11-27 12:02:19] 2025-11-27 17:01:43,069 | INFO     | mean x: 1764240077.4390898
[2025-11-27 12:02:19] 2025-11-27 17:01:43,070 | INFO     | mean y: 3477620.6345381527
[2025-11-27 12:02:19] 2025-11-27 17:01:43,070 | INFO     | intersect: -19525689104.354305
[2025-11-27 12:02:19] 2025-11-27 17:01:43,070 | INFO     | chi2: 6.216501097213202
[2025-11-27 12:02:19] 2025-11-27 17:01:43,071 | INFO     | sum of square deviations: 126672095616.05392
[2025-11-27 12:02:19] 2025-11-27 17:01:43,081 | INFO     | sum of deviations: 1730403360372.6833
[2025-11-27 12:02:19] 2025-11-27 17:01:43,081 | INFO     | mean x: 1764239924.948787
[2025-11-27 12:02:19] 2025-11-27 17:01:43,081 | INFO     | mean y: 3495340.149595687
[2025-11-27 12:02:19] 2025-11-27 17:01:43,081 | INFO     | intersect: -24096892987.586617
[2025-11-27 12:02:19] 2025-11-27 17:01:43,082 | INFO     | chi2: 3.0711614654411803
[2025-11-27 12:02:19] 2025-11-27 17:01:43,082 | INFO     | current chi2=3.0711614654411803 (change=50.596623125861704 %)
[2025-11-27 12:02:19] 2025-11-27 17:01:43,083 | INFO     | sum of square deviations: 124128741448.81676
[2025-11-27 12:02:19] 2025-11-27 17:01:43,092 | INFO     | sum of deviations: 1816369462315.236
[2025-11-27 12:02:19] 2025-11-27 17:01:43,093 | INFO     | mean x: 1764239772.4559023
[2025-11-27 12:02:19] 2025-11-27 17:01:43,093 | INFO     | mean y: 3500481.130257802
[2025-11-27 12:02:19] 2025-11-27 17:01:43,093 | INFO     | intersect: -25812528985.43958
[2025-11-27 12:02:19] 2025-11-27 17:01:43,093 | INFO     | chi2: 2.5738347388764753
[2025-11-27 12:02:19] 2025-11-27 17:01:43,094 | INFO     | current chi2=2.5738347388764753 (change=16.19344121632702 %)
[2025-11-27 12:02:19] 2025-11-27 17:01:43,094 | INFO     | right removable region: 736
[2025-11-27 12:02:19] 2025-11-27 17:01:43,094 | INFO     | sum of square deviations: 126671530637.84344
[2025-11-27 12:02:19] 2025-11-27 17:01:43,104 | INFO     | sum of deviations: 1199860390817.6296
[2025-11-27 12:02:19] 2025-11-27 17:01:43,104 | INFO     | mean x: 1764240229.9460917
[2025-11-27 12:02:19] 2025-11-27 17:01:43,104 | INFO     | mean y: 3491251.665768194
[2025-11-27 12:02:19] 2025-11-27 17:01:43,105 | INFO     | intersect: -16707777343.101574
[2025-11-27 12:02:19] 2025-11-27 17:01:43,105 | INFO     | chi2: 4.258120724024737
[2025-11-27 12:02:19] 2025-11-27 17:01:43,105 | INFO     | current chi2=4.258120724024737 (change=31.502936178461997 %)
[2025-11-27 12:02:19] 2025-11-27 17:01:43,106 | INFO     | sum of square deviations: 124127837804.3422
[2025-11-27 12:02:19] 2025-11-27 17:01:43,116 | INFO     | sum of deviations: 1102378130378.0017
[2025-11-27 12:02:19] 2025-11-27 17:01:43,117 | INFO     | mean x: 1764240382.4491181
[2025-11-27 12:02:19] 2025-11-27 17:01:43,117 | INFO     | mean y: 3497095.0
[2025-11-27 12:02:19] 2025-11-27 17:01:43,117 | INFO     | intersect: -15664704726.1518
[2025-11-27 12:02:19] 2025-11-27 17:01:43,118 | INFO     | chi2: 4.075879450525348
[2025-11-27 12:02:19] 2025-11-27 17:01:43,118 | INFO     | current chi2=4.075879450525348 (change=4.279852200318454 %)
[2025-11-27 12:02:19] 2025-11-27 17:01:43,118 | INFO     | left removable region: 20
[2025-11-27 12:02:19] 2025-11-27 17:01:43,118 | INFO     | sum of square deviations: 113816842352.38408
[2025-11-27 12:02:19] 2025-11-27 17:01:43,127 | INFO     | sum of deviations: 1335128013712.3389
[2025-11-27 12:02:19] 2025-11-27 17:01:43,127 | INFO     | mean x: 1764240351.9706705
[2025-11-27 12:02:19] 2025-11-27 17:01:43,127 | INFO     | mean y: 3529629.2541899444
[2025-11-27 12:02:19] 2025-11-27 17:01:43,127 | INFO     | intersect: -20691884758.934727
[2025-11-27 12:02:19] 2025-11-27 17:01:43,128 | INFO     | chi2: 0.2647854591545673
[2025-11-27 12:02:19] 2025-11-27 17:01:43,128 | INFO     | current memory leak: 11.73 B/s (using 716 data points, chi2=0.26)
[2025-11-27 12:02:19] 2025-11-27 17:01:43,129 | INFO     | could have reported an average CPU frequency of 3408 MHz (28 samples)
[2025-11-27 12:02:19] 2025-11-27 17:01:43,129 | INFO     | ..............................
[2025-11-27 12:02:19] 2025-11-27 17:01:43,130 | INFO     | . Timing measurements:
[2025-11-27 12:02:19] 2025-11-27 17:01:43,130 | INFO     | . get job = 0 s
[2025-11-27 12:02:19] 2025-11-27 17:01:43,130 | INFO     | . initial setup = 2 s
[2025-11-27 12:02:19] 2025-11-27 17:01:43,130 | INFO     | . payload setup = 6 s
[2025-11-27 12:02:19] 2025-11-27 17:01:43,130 | INFO     | . stage-in = 0 s
[2025-11-27 12:02:19] 2025-11-27 17:01:43,130 | INFO     | . payload execution = 45567 s
[2025-11-27 12:02:19] 2025-11-27 17:01:43,130 | INFO     | . stage-out = 3 s
[2025-11-27 12:02:19] 2025-11-27 17:01:43,130 | INFO     | . log creation = 0 s
[2025-11-27 12:02:19] 2025-11-27 17:01:43,130 | INFO     | ..............................
[2025-11-27 12:02:19] 2025-11-27 17:01:43,200 | INFO     | 
[2025-11-27 12:02:19] 2025-11-27 17:01:43,201 | INFO     | job summary report
[2025-11-27 12:02:19] 2025-11-27 17:01:43,201 | INFO     | --------------------------------------------------
[2025-11-27 12:02:19] 2025-11-27 17:01:43,202 | INFO     | PanDA job id: 6891601605
[2025-11-27 12:02:19] 2025-11-27 17:01:43,202 | INFO     | task id: 47493068
[2025-11-27 12:02:19] 2025-11-27 17:01:43,202 | INFO     | errors: (none)
[2025-11-27 12:02:19] 2025-11-27 17:01:43,202 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 12:02:19] 2025-11-27 17:01:43,202 | INFO     | pilot state: finished 
[2025-11-27 12:02:19] 2025-11-27 17:01:43,202 | INFO     | transexitcode: 0
[2025-11-27 12:02:19] 2025-11-27 17:01:43,202 | INFO     | exeerrorcode: 0
[2025-11-27 12:02:19] 2025-11-27 17:01:43,202 | INFO     | exeerrordiag: 
[2025-11-27 12:02:19] 2025-11-27 17:01:43,202 | INFO     | exitcode: 0
[2025-11-27 12:02:19] 2025-11-27 17:01:43,202 | INFO     | exitmsg: OK
[2025-11-27 12:02:19] 2025-11-27 17:01:43,202 | INFO     | cpuconsumptiontime: 181768 s
[2025-11-27 12:02:19] 2025-11-27 17:01:43,202 | INFO     | nevents: 1000
[2025-11-27 12:02:19] 2025-11-27 17:01:43,202 | INFO     | neventsw: 0
[2025-11-27 12:02:19] 2025-11-27 17:01:43,202 | INFO     | pid: 1710118
[2025-11-27 12:02:19] 2025-11-27 17:01:43,203 | INFO     | pgrp: 1710118
[2025-11-27 12:02:19] 2025-11-27 17:01:43,203 | INFO     | corecount: 11
[2025-11-27 12:02:19] 2025-11-27 17:01:43,203 | INFO     | event service: False
[2025-11-27 12:02:19] 2025-11-27 17:01:43,203 | INFO     | sizes: {0: 2284304, 5: 2284566, 11: 2284622, 45578: 2328264, 45582: 2337258, 45584: 2337314, 45593: 2337688}
[2025-11-27 12:02:19] 2025-11-27 17:01:43,203 | INFO     | --------------------------------------------------
[2025-11-27 12:02:19] 2025-11-27 17:01:43,203 | INFO     | 
[2025-11-27 12:02:19] 2025-11-27 17:01:43,203 | INFO     | executing command: ls -lF /tmp/boinchome/slots/7
[2025-11-27 12:02:19] 2025-11-27 17:01:43,250 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 12:02:19] 2025-11-27 17:01:43,250 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 12:02:19] 2025-11-27 17:01:43,250 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 12:02:19] 2025-11-27 17:01:43,250 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 12:02:19] 2025-11-27 17:01:43,250 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 12:02:19] 2025-11-27 17:01:43,251 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 12:02:19] 2025-11-27 17:01:43,251 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 12:02:19] 2025-11-27 17:01:43,251 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 12:02:19] 2025-11-27 17:01:43,251 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 12:02:19] 2025-11-27 17:01:43,251 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 12:02:19] 2025-11-27 17:01:43,251 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 12:02:19] 2025-11-27 17:01:43,251 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 12:02:19] 2025-11-27 17:01:43,251 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 12:02:19] 2025-11-27 17:01:43,251 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 12:02:19] 2025-11-27 17:01:43,251 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 12:02:19] 2025-11-27 17:01:43,251 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 12:02:19] 2025-11-27 17:01:43,251 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 12:02:19] 2025-11-27 17:01:43,251 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 12:02:19] 2025-11-27 17:01:43,251 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 12:02:19] 2025-11-27 17:01:43,251 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 12:02:19] 2025-11-27 17:01:43,252 | INFO     | job 6891601605 has completed (purged errors)
[2025-11-27 12:02:19] 2025-11-27 17:01:43,252 | INFO     | overall cleanup function is called
[2025-11-27 12:02:19] 2025-11-27 17:01:44,270 | INFO     | --- collectZombieJob: --- 10, [1710118]
[2025-11-27 12:02:19] 2025-11-27 17:01:44,270 | INFO     | zombie collector waiting for pid 1710118
[2025-11-27 12:02:19] 2025-11-27 17:01:44,271 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 12:02:19] 2025-11-27 17:01:44,271 | INFO     | collected zombie processes
[2025-11-27 12:02:19] 2025-11-27 17:01:44,271 | INFO     | will attempt to kill all subprocesses of pid=1710118
[2025-11-27 12:02:19] 2025-11-27 17:01:45,293 | INFO     | process IDs to be killed: [1710118] (in reverse order)
[2025-11-27 12:02:19] 2025-11-27 17:01:45,602 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 12:02:19] 2025-11-27 17:01:45,602 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 12:02:19] 2025-11-27 17:01:45,632 | INFO     | did not find any defunct processes belonging to 1710118
[2025-11-27 12:02:19] 2025-11-27 17:01:45,655 | INFO     | did not find any defunct processes belonging to 1710118
[2025-11-27 12:02:19] 2025-11-27 17:01:45,656 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 12:02:19] 2025-11-27 17:01:45,656 | INFO     | ready for new job
[2025-11-27 12:02:19] 2025-11-27 17:01:45,656 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 12:02:19] 2025-11-27 17:01:45,659 | INFO     | ***************************************
[2025-11-27 12:02:19] 2025-11-27 17:01:45,659 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 12:02:19] 2025-11-27 17:01:45,659 | INFO     | ***************************************
[2025-11-27 12:02:19] 2025-11-27 17:01:45,659 | INFO     | 
[2025-11-27 12:02:19] 2025-11-27 17:01:45,662 | INFO     | architecture information:
[2025-11-27 12:02:19] 2025-11-27 17:01:45,663 | INFO     | executing command: cat /etc/os-release
[2025-11-27 12:02:19] 2025-11-27 17:01:45,678 | INFO     | cat /etc/os-release:
[2025-11-27 12:02:19] NAME="CentOS Linux"
[2025-11-27 12:02:19] VERSION="7 (Core)"
[2025-11-27 12:02:19] ID="centos"
[2025-11-27 12:02:19] ID_LIKE="rhel fedora"
[2025-11-27 12:02:19] VERSION_ID="7"
[2025-11-27 12:02:19] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 12:02:19] ANSI_COLOR="0;31"
[2025-11-27 12:02:19] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 12:02:19] HOME_URL="https://www.centos.org/"
[2025-11-27 12:02:19] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 12:02:19] 
[2025-11-27 12:02:19] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 12:02:19] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 12:02:19] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 12:02:19] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 12:02:19] 
[2025-11-27 12:02:19] 2025-11-27 17:01:45,678 | INFO     | ***************************************
[2025-11-27 12:02:19] 2025-11-27 17:01:46,181 | INFO     | executing command: df -mP /tmp/boinchome/slots/7
[2025-11-27 12:02:19] 2025-11-27 17:01:46,202 | INFO     | sufficient remaining disk space (65487765504 B)
[2025-11-27 12:02:19] 2025-11-27 17:01:46,202 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 12:02:19] 2025-11-27 17:01:46,202 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 12:02:19] 2025-11-27 17:01:46,202 | INFO     | update_server=False
[2025-11-27 12:02:19] 2025-11-27 17:01:46,202 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 12:02:19] 2025-11-27 17:01:46,202 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 12:02:19] 2025-11-27 17:01:46,203 | INFO     | aborting loop
[2025-11-27 12:02:19] 2025-11-27 17:01:46,302 | INFO     | all payload control threads have been joined
[2025-11-27 12:02:19] 2025-11-27 17:01:46,508 | INFO     | all data control threads have been joined
[2025-11-27 12:02:19] 2025-11-27 17:01:46,508 | INFO     | all job control threads have been joined
[2025-11-27 12:02:19] 2025-11-27 17:01:47,216 | INFO     | [job] retrieve thread has finished
[2025-11-27 12:02:19] 2025-11-27 17:01:47,217 | INFO     | [job] job monitor thread has finished
[2025-11-27 12:02:19] 2025-11-27 17:01:47,290 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 12:02:19] 2025-11-27 17:01:47,293 | INFO     | [job] validate thread has finished
[2025-11-27 12:02:19] 2025-11-27 17:01:47,308 | INFO     | [payload] control thread has finished
[2025-11-27 12:02:19] 2025-11-27 17:01:47,513 | INFO     | [data] control thread has finished
[2025-11-27 12:02:19] 2025-11-27 17:01:47,514 | INFO     | [job] control thread has finished
[2025-11-27 12:02:19] 2025-11-27 17:01:47,606 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 12:02:19] 2025-11-27 17:01:47,610 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 12:02:19] 2025-11-27 17:01:47,611 | INFO     | [data] copytool_in thread has finished
[2025-11-27 12:02:19] 2025-11-27 17:01:47,692 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 12:02:19] 2025-11-27 17:01:48,144 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 12:02:19] 2025-11-27 17:01:48,222 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 12:02:19] 2025-11-27 17:01:48,698 | INFO     | [payload] failed_post thread has finished
[2025-11-27 12:02:19] 2025-11-27 17:01:48,799 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 12:02:19] 2025-11-27 17:01:48,803 | INFO     | [payload] validate_post thread has finished
[2025-11-27 12:02:19] 2025-11-27 17:01:49,228 | INFO     | [job] queue monitor thread has finished
[2025-11-27 12:02:19] 2025-11-27 17:01:49,706 | INFO     | [data] copytool_out thread has finished
[2025-11-27 12:02:19] 2025-11-27 17:01:52,805 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 12:02:19] 2025-11-27 17:02:12,311 | INFO     | [monitor] cgroup control has ended
[2025-11-27 12:02:19] 2025-11-27 17:02:13,614 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140183177725760)>', '<ExcThread(monitor, started 140182539978496)>']
[2025-11-27 12:02:19] 2025-11-27 17:02:15,769 | INFO     | PID=1656865 has CPU usage=8.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 12:02:19] 2025-11-27 17:02:15,769 | INFO     | .. there are 91 such processes running
[2025-11-27 12:02:19] 2025-11-27 17:02:15,770 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 12:02:19] 2025-11-27 17:02:15,770 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 12:02:19] 2025-11-27 17:02:15,770 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 12:02:19] 2025-11-27 17:02:15,770 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 12:02:19] 2025-11-27 17:02:15,770 | INFO     | [monitor] control thread has ended
[2025-11-27 12:02:19] 2025-11-27 17:02:18,643 | INFO     | all workflow threads have been joined
[2025-11-27 12:02:19] 2025-11-27 17:02:18,643 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 12:02:19] 2025-11-27 17:02:18,643 | INFO     | traces error code: 0
[2025-11-27 12:02:19] 2025-11-27 17:02:18,644 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 12:02:19] 2025-11-27 17:02:18,866 [wrapper] ==== pilot stdout END ====
[2025-11-27 12:02:19] 2025-11-27 17:02:18,868 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 12:02:19] 2025-11-27 17:02:18,870 [wrapper] pilotpid: 1656865
[2025-11-27 12:02:19] 2025-11-27 17:02:18,872 [wrapper] Pilot exit status: 0
[2025-11-27 12:02:19] 2025-11-27 17:02:18,885 [wrapper] pandaids: 6891601605 6891601605
[2025-11-27 12:02:19] 2025-11-27 17:02:19,037 [wrapper] cleanup supervisor_pilot  852470 1656866
[2025-11-27 12:02:19] 2025-11-27 17:02:19,039 [wrapper] Test setup, not cleaning
[2025-11-27 12:02:19] 2025-11-27 17:02:19,042 [wrapper] apfmon messages muted
[2025-11-27 12:02:19] 2025-11-27 17:02:19,045 [wrapper] ==== wrapper stdout END ====
[2025-11-27 12:02:19] 2025-11-27 17:02:19,047 [wrapper] ==== wrapper stderr END ====
[2025-11-27 12:02:19]  *** Error codes and diagnostics ***
[2025-11-27 12:02:19]     "exeErrorCode": 0,
[2025-11-27 12:02:19]     "exeErrorDiag": "",
[2025-11-27 12:02:19]     "pilotErrorCode": 0,
[2025-11-27 12:02:19]     "pilotErrorDiag": "",
[2025-11-27 12:02:19]  *** Listing of results directory ***
[2025-11-27 12:02:19] total 1704304
[2025-11-27 12:02:19] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-27 12:02:19] -rw-r--r--. 1 boincer umatlas    576529 Nov 18 13:50 pilot3.tar.gz
[2025-11-27 12:02:19] -rw-r--r--. 1 boincer umatlas      5112 Nov 18 14:11 queuedata.json
[2025-11-27 12:02:19] -rwx------. 1 boincer umatlas     36292 Nov 18 14:13 runpilot2-wrapper.sh
[2025-11-27 12:02:19] -rw-r--r--. 1 boincer umatlas       100 Nov 26 11:11 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 12:02:19] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 11:11 run_atlas
[2025-11-27 12:02:19] -rw-r--r--. 1 boincer umatlas       105 Nov 26 11:11 job.xml
[2025-11-27 12:02:19] -rw-r--r--. 3 boincer umatlas 407962941 Nov 26 11:11 EVNT.47493065._000836.pool.root.1
[2025-11-27 12:02:19] -rw-r--r--. 3 boincer umatlas 407962941 Nov 26 11:11 ATLAS.root_0
[2025-11-27 12:02:19] -rw-r--r--. 2 boincer umatlas     15120 Nov 26 11:11 start_atlas.sh
[2025-11-27 12:02:19] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 11:11 shared
[2025-11-27 12:02:19] -rw-r--r--. 2 boincer umatlas    590098 Nov 26 11:11 input.tar.gz
[2025-11-27 12:02:19] -rw-r--r--. 1 boincer umatlas         0 Nov 26 11:11 boinc_lockfile
[2025-11-27 12:02:19] -rw-r--r--. 1 boincer umatlas      2773 Nov 26 23:21 pandaJob.out
[2025-11-27 12:02:19] -rw-------. 1 boincer umatlas    991570 Nov 26 23:21 agis_schedconf.cvmfs.json
[2025-11-27 12:02:19] -rw-r--r--. 1 boincer umatlas       533 Nov 27 11:50 boinc_task_state.xml
[2025-11-27 12:02:19] -rw-r--r--. 1 boincer umatlas      6946 Nov 27 11:54 init_data.xml
[2025-11-27 12:02:19] -rw-------. 1 boincer umatlas 912179445 Nov 27 12:00 HITS.47493068._007009.pool.root.1
[2025-11-27 12:02:19] -rw-------. 1 boincer umatlas      1071 Nov 27 12:01 memory_monitor_summary.json
[2025-11-27 12:02:19] -rw-------. 1 boincer umatlas   1516240 Nov 27 12:01 agis_ddmendpoints.agis.ALL.json
[2025-11-27 12:02:19] -rw-------. 1 boincer umatlas   2168349 Nov 27 12:01 log.47493068._007009.job.log.tgz.1
[2025-11-27 12:02:19] -rw-------. 1 boincer umatlas      8616 Nov 27 12:01 heartbeat.json
[2025-11-27 12:02:19] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 12:02 boinc_mmap_file
[2025-11-27 12:02:19] -rw-r--r--. 1 boincer umatlas        29 Nov 27 12:02 wrapper_checkpoint.txt
[2025-11-27 12:02:19] -rw-------. 1 boincer umatlas        96 Nov 27 12:02 pilot_heartbeat.json
[2025-11-27 12:02:19] -rw-------. 1 boincer umatlas      4824 Nov 27 12:02 pilotlog.txt
[2025-11-27 12:02:19] -rw-------. 1 boincer umatlas   4416631 Nov 27 12:02 log.47493068._007009.job.log.1
[2025-11-27 12:02:19] -rw-------. 1 boincer umatlas       353 Nov 27 12:02 output.list
[2025-11-27 12:02:19] -rw-r--r--. 1 boincer umatlas       620 Nov 27 12:02 runtime_log
[2025-11-27 12:02:19] -rw-------. 1 boincer umatlas   6604800 Nov 27 12:02 result.tar.gz
[2025-11-27 12:02:19] -rw-r--r--. 1 boincer umatlas      8786 Nov 27 12:02 runtime_log.err
[2025-11-27 12:02:19] -rw-------. 1 boincer umatlas       788 Nov 27 12:02 G2DNDmwJgf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmJQGKDmTyE9Jm.diag
[2025-11-27 12:02:19] -rw-r--r--. 1 boincer umatlas     23616 Nov 27 12:02 stderr.txt
[2025-11-27 12:02:19] HITS file was successfully produced:
[2025-11-27 12:02:19] -rw-------. 1 boincer umatlas 912179445 Nov 27 12:00 shared/HITS.pool.root.1
[2025-11-27 12:02:19]  *** Contents of shared directory: ***
[2025-11-27 12:02:19] total 1296264
[2025-11-27 12:02:19] -rw-r--r--. 3 boincer umatlas 407962941 Nov 26 11:11 ATLAS.root_0
[2025-11-27 12:02:19] -rw-r--r--. 2 boincer umatlas     15120 Nov 26 11:11 start_atlas.sh
[2025-11-27 12:02:19] -rw-r--r--. 2 boincer umatlas    590098 Nov 26 11:11 input.tar.gz
[2025-11-27 12:02:19] -rw-------. 1 boincer umatlas 912179445 Nov 27 12:00 HITS.pool.root.1
[2025-11-27 12:02:19] -rw-------. 1 boincer umatlas   6604800 Nov 27 12:02 result.tar.gz
12:02:20 (1633919): run_atlas exited; CPU time 182463.948460
12:02:20 (1633919): called boinc_finish(0)

</stderr_txt>
]]>

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