Stderr output

<core_client_version>8.2.6</core_client_version>
<![CDATA[
<stderr_txt>
21:51:19 (108905): wrapper (7.7.26015): starting
21:51:19 (108905): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 07:46:45] Arguments: --nthreads 8
[2025-11-27 07:46:45] Threads: 8
[2025-11-27 07:46:45] Checking for CVMFS
[2025-11-27 07:46:45] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 07:46:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 07:46:45] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 07:46:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 07:46:45] 2.13.2.0 109044 0 24868 153323 3 1 1362810 4194304 0 130560 0 0 100.000 0 0 http://s1swinburne-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
[2025-11-27 07:46:45] CVMFS is ok
[2025-11-27 07:46:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 07:46:45] Small home clusters do not require a local http proxy but it is suggested if
[2025-11-27 07:46:45] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-11-27 07:46:45] Further information can be found at the LHC@home message board.
[2025-11-27 07:46:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 07:46:45] Checking for apptainer binary...
[2025-11-27 07:46:45] Using apptainer found in PATH at /usr/local/bin/apptainer
[2025-11-27 07:46:45] Running /usr/local/bin/apptainer --version
[2025-11-27 07:46:45] apptainer version 1.4.2+328-gce6609921
[2025-11-27 07:46:45] Checking apptainer works with /usr/local/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 07:46:45] ducatixeon3-PowerEdge-T620
[2025-11-27 07:46:45] apptainer works
[2025-11-27 07:46:45] Set ATHENA_PROC_NUMBER=8
[2025-11-27 07:46:45] Set ATHENA_CORE_NUMBER=8
[2025-11-27 07:46:45] Starting ATLAS job with PandaID=6891558580
[2025-11-27 07:46:45] Running command: /usr/local/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/13 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 07:46:45]  *** The last 200 lines of the pilot log: ***
[2025-11-27 07:46:45] 2025-11-26 23:45:26,667 | INFO     | time since job start (35620s) is within the limit (172800.0s)
[2025-11-27 07:46:45] 2025-11-26 23:45:26,679 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-27 07:46:45] 2025-11-26 23:45:28,672 | INFO     | time since job start (35622s) is within the limit (172800.0s)
[2025-11-27 07:46:45] 2025-11-26 23:45:28,691 | INFO     | monitor loop #2605: job 0:6891558580 is in state 'finished'
[2025-11-27 07:46:45] 2025-11-26 23:45:28,691 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 07:46:45] 2025-11-26 23:45:30,677 | INFO     | time since job start (35624s) is within the limit (172800.0s)
[2025-11-27 07:46:45] 2025-11-26 23:45:31,194 | INFO     | monitor loop #2606: job 0:6891558580 is in state 'finished'
[2025-11-27 07:46:45] 2025-11-26 23:45:31,194 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 07:46:45] 2025-11-26 23:45:32,682 | INFO     | time since job start (35626s) is within the limit (172800.0s)
[2025-11-27 07:46:45] 2025-11-26 23:45:33,697 | INFO     | monitor loop #2607: job 0:6891558580 is in state 'finished'
[2025-11-27 07:46:45] 2025-11-26 23:45:33,697 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 07:46:45] 2025-11-26 23:45:34,688 | INFO     | time since job start (35628s) is within the limit (172800.0s)
[2025-11-27 07:46:45] 2025-11-26 23:45:36,200 | INFO     | monitor loop #2608: job 0:6891558580 is in state 'finished'
[2025-11-27 07:46:45] 2025-11-26 23:45:36,201 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 07:46:45] 2025-11-26 23:45:36,693 | INFO     | time since job start (35630s) is within the limit (172800.0s)
[2025-11-27 07:46:45] 2025-11-26 23:45:38,561 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-27 07:46:45] 2025-11-26 23:45:38,566 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2262.3653249999998
[2025-11-27 07:46:45] 2025-11-26 23:45:38,570 | INFO     | using path: /var/lib/boinc-client/slots/13/PanDA_Pilot-6891558580/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 07:46:45] 2025-11-26 23:45:38,570 | INFO     | extracted standard info from prmon json
[2025-11-27 07:46:45] 2025-11-26 23:45:38,570 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 07:46:45] 2025-11-26 23:45:38,571 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 07:46:45] 2025-11-26 23:45:38,578 | INFO     | fitting pss+swap vs Time
[2025-11-27 07:46:45] 2025-11-26 23:45:38,578 | INFO     | sum of square deviations: 61761195210.0
[2025-11-27 07:46:45] 2025-11-26 23:45:38,584 | INFO     | sum of deviations: 701777626310.9999
[2025-11-27 07:46:45] 2025-11-26 23:45:38,584 | INFO     | mean x: 1764182911.5
[2025-11-27 07:46:45] 2025-11-26 23:45:38,584 | INFO     | mean y: 2858864.3938356163
[2025-11-27 07:46:45] 2025-11-26 23:45:38,585 | INFO     | intersect: -20043127807.354362
[2025-11-27 07:46:45] 2025-11-26 23:45:38,585 | INFO     | chi2: 12.946187717791075
[2025-11-27 07:46:45] 2025-11-26 23:45:38,586 | INFO     | sum of square deviations: 60188402930.0
[2025-11-27 07:46:45] 2025-11-26 23:45:38,591 | INFO     | sum of deviations: 892717355383.9999
[2025-11-27 07:46:45] 2025-11-26 23:45:38,591 | INFO     | mean x: 1764182759.0
[2025-11-27 07:46:45] 2025-11-26 23:45:38,591 | INFO     | mean y: 2877373.4732297063
[2025-11-27 07:46:45] 2025-11-26 23:45:38,592 | INFO     | intersect: -26163568160.231655
[2025-11-27 07:46:45] 2025-11-26 23:45:38,592 | INFO     | chi2: 9.844884033481973
[2025-11-27 07:46:45] 2025-11-26 23:45:38,592 | INFO     | current chi2=9.844884033481973 (change=23.95534308564975 %)
[2025-11-27 07:46:45] 2025-11-26 23:45:38,592 | INFO     | right removable region: 578
[2025-11-27 07:46:45] 2025-11-26 23:45:38,593 | INFO     | sum of square deviations: 60188402930.0
[2025-11-27 07:46:45] 2025-11-26 23:45:38,598 | INFO     | sum of deviations: 505387081685.9999
[2025-11-27 07:46:45] 2025-11-26 23:45:38,598 | INFO     | mean x: 1764183064.0
[2025-11-27 07:46:45] 2025-11-26 23:45:38,599 | INFO     | mean y: 2877895.8670120896
[2025-11-27 07:46:45] 2025-11-26 23:45:38,599 | INFO     | intersect: -14810529452.916842
[2025-11-27 07:46:45] 2025-11-26 23:45:38,599 | INFO     | chi2: 9.920320335153662
[2025-11-27 07:46:45] 2025-11-26 23:45:38,599 | INFO     | current chi2=9.920320335153662 (change=23.372651846220084 %)
[2025-11-27 07:46:45] 2025-11-26 23:45:38,599 | INFO     | left removable region: 10
[2025-11-27 07:46:45] 2025-11-26 23:45:38,600 | INFO     | sum of square deviations: 56822728662.0
[2025-11-27 07:46:45] 2025-11-26 23:45:38,605 | INFO     | sum of deviations: 565919579546.5
[2025-11-27 07:46:45] 2025-11-26 23:45:38,605 | INFO     | mean x: 1764183033.5
[2025-11-27 07:46:45] 2025-11-26 23:45:38,605 | INFO     | mean y: 2917514.63556338
[2025-11-27 07:46:45] 2025-11-26 23:45:38,606 | INFO     | intersect: -17567265123.02182
[2025-11-27 07:46:45] 2025-11-26 23:45:38,606 | INFO     | chi2: 4.068432507733724
[2025-11-27 07:46:45] 2025-11-26 23:45:38,606 | INFO     | current memory leak: 9.96 B/s (using 568 data points, chi2=4.07)
[2025-11-27 07:46:45] 2025-11-26 23:45:38,607 | INFO     | could have reported an average CPU frequency of 2476 MHz (23 samples)
[2025-11-27 07:46:45] 2025-11-26 23:45:38,607 | INFO     | ..............................
[2025-11-27 07:46:45] 2025-11-26 23:45:38,607 | INFO     | . Timing measurements:
[2025-11-27 07:46:45] 2025-11-26 23:45:38,607 | INFO     | . get job = 0 s
[2025-11-27 07:46:45] 2025-11-26 23:45:38,607 | INFO     | . initial setup = 6 s
[2025-11-27 07:46:45] 2025-11-26 23:45:38,607 | INFO     | . payload setup = 5 s
[2025-11-27 07:46:45] 2025-11-26 23:45:38,607 | INFO     | . stage-in = 0 s
[2025-11-27 07:46:45] 2025-11-26 23:45:38,607 | INFO     | . payload execution = 35586 s
[2025-11-27 07:46:45] 2025-11-26 23:45:38,607 | INFO     | . stage-out = 6 s
[2025-11-27 07:46:45] 2025-11-26 23:45:38,608 | INFO     | . log creation = 0 s
[2025-11-27 07:46:45] 2025-11-26 23:45:38,608 | INFO     | ..............................
[2025-11-27 07:46:45] 2025-11-26 23:45:38,698 | INFO     | time since job start (35632s) is within the limit (172800.0s)
[2025-11-27 07:46:45] 2025-11-26 23:45:39,167 | INFO     | 
[2025-11-27 07:46:45] 2025-11-26 23:45:39,167 | INFO     | job summary report
[2025-11-27 07:46:45] 2025-11-26 23:45:39,167 | INFO     | --------------------------------------------------
[2025-11-27 07:46:45] 2025-11-26 23:45:39,168 | INFO     | PanDA job id: 6891558580
[2025-11-27 07:46:45] 2025-11-26 23:45:39,168 | INFO     | task id: 47493068
[2025-11-27 07:46:45] 2025-11-26 23:45:39,168 | INFO     | errors: (none)
[2025-11-27 07:46:45] 2025-11-26 23:45:39,168 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 07:46:45] 2025-11-26 23:45:39,168 | INFO     | pilot state: finished 
[2025-11-27 07:46:45] 2025-11-26 23:45:39,168 | INFO     | transexitcode: 0
[2025-11-27 07:46:45] 2025-11-26 23:45:39,169 | INFO     | exeerrorcode: 0
[2025-11-27 07:46:45] 2025-11-26 23:45:39,169 | INFO     | exeerrordiag: 
[2025-11-27 07:46:45] 2025-11-26 23:45:39,169 | INFO     | exitcode: 0
[2025-11-27 07:46:45] 2025-11-26 23:45:39,169 | INFO     | exitmsg: OK
[2025-11-27 07:46:45] 2025-11-26 23:45:39,169 | INFO     | cpuconsumptiontime: 273674 s
[2025-11-27 07:46:45] 2025-11-26 23:45:39,169 | INFO     | nevents: 1000
[2025-11-27 07:46:45] 2025-11-26 23:45:39,169 | INFO     | neventsw: 0
[2025-11-27 07:46:45] 2025-11-26 23:45:39,169 | INFO     | pid: 119971
[2025-11-27 07:46:45] 2025-11-26 23:45:39,170 | INFO     | pgrp: 119971
[2025-11-27 07:46:45] 2025-11-26 23:45:39,170 | INFO     | corecount: 8
[2025-11-27 07:46:45] 2025-11-26 23:45:39,170 | INFO     | event service: False
[2025-11-27 07:46:45] 2025-11-26 23:45:39,170 | INFO     | sizes: {0: 2284308, 3: 2284570, 11: 2284598, 35595: 2325930, 35602: 2334940, 35605: 2334996, 35618: 2335370}
[2025-11-27 07:46:45] 2025-11-26 23:45:39,170 | INFO     | --------------------------------------------------
[2025-11-27 07:46:45] 2025-11-26 23:45:39,170 | INFO     | 
[2025-11-27 07:46:45] 2025-11-26 23:45:39,171 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/13
[2025-11-27 07:46:45] 2025-11-26 23:45:39,187 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 07:46:45] 2025-11-26 23:45:39,188 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 07:46:45] 2025-11-26 23:45:39,188 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 07:46:45] 2025-11-26 23:45:39,188 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 07:46:45] 2025-11-26 23:45:39,188 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 07:46:45] 2025-11-26 23:45:39,188 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 07:46:45] 2025-11-26 23:45:39,188 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 07:46:45] 2025-11-26 23:45:39,188 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 07:46:45] 2025-11-26 23:45:39,188 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 07:46:45] 2025-11-26 23:45:39,188 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 07:46:45] 2025-11-26 23:45:39,188 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 07:46:45] 2025-11-26 23:45:39,188 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 07:46:45] 2025-11-26 23:45:39,189 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 07:46:45] 2025-11-26 23:45:39,189 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 07:46:45] 2025-11-26 23:45:39,189 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 07:46:45] 2025-11-26 23:45:39,189 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 07:46:45] 2025-11-26 23:45:39,189 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 07:46:45] 2025-11-26 23:45:39,189 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 07:46:45] 2025-11-26 23:45:39,189 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 07:46:45] 2025-11-26 23:45:39,189 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 07:46:45] 2025-11-26 23:45:39,189 | INFO     | job 6891558580 has completed (purged errors)
[2025-11-27 07:46:45] 2025-11-26 23:45:39,189 | INFO     | overall cleanup function is called
[2025-11-27 07:46:45] 2025-11-26 23:45:40,203 | INFO     | --- collectZombieJob: --- 10, [119971]
[2025-11-27 07:46:45] 2025-11-26 23:45:40,204 | INFO     | zombie collector waiting for pid 119971
[2025-11-27 07:46:45] 2025-11-26 23:45:40,204 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 07:46:45] 2025-11-26 23:45:40,204 | INFO     | collected zombie processes
[2025-11-27 07:46:45] 2025-11-26 23:45:40,204 | INFO     | will attempt to kill all subprocesses of pid=119971
[2025-11-27 07:46:45] 2025-11-26 23:45:40,352 | INFO     | process IDs to be killed: [119971] (in reverse order)
[2025-11-27 07:46:45] 2025-11-26 23:45:40,401 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 07:46:45] 2025-11-26 23:45:40,401 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 07:46:45] 2025-11-26 23:45:40,410 | INFO     | did not find any defunct processes belonging to 119971
[2025-11-27 07:46:45] 2025-11-26 23:45:40,417 | INFO     | did not find any defunct processes belonging to 119971
[2025-11-27 07:46:45] 2025-11-26 23:45:40,420 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 07:46:45] 2025-11-26 23:45:40,420 | INFO     | ready for new job
[2025-11-27 07:46:45] 2025-11-26 23:45:40,420 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 07:46:45] 2025-11-26 23:45:40,423 | INFO     | ***************************************
[2025-11-27 07:46:45] 2025-11-26 23:45:40,423 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 07:46:45] 2025-11-26 23:45:40,423 | INFO     | ***************************************
[2025-11-27 07:46:45] 2025-11-26 23:45:40,423 | INFO     | 
[2025-11-27 07:46:45] 2025-11-26 23:45:40,424 | INFO     | architecture information:
[2025-11-27 07:46:45] 2025-11-26 23:45:40,425 | INFO     | executing command: cat /etc/os-release
[2025-11-27 07:46:45] 2025-11-26 23:45:40,436 | INFO     | cat /etc/os-release:
[2025-11-27 07:46:45] NAME="CentOS Linux"
[2025-11-27 07:46:45] VERSION="7 (Core)"
[2025-11-27 07:46:45] ID="centos"
[2025-11-27 07:46:45] ID_LIKE="rhel fedora"
[2025-11-27 07:46:45] VERSION_ID="7"
[2025-11-27 07:46:45] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 07:46:45] ANSI_COLOR="0;31"
[2025-11-27 07:46:45] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 07:46:45] HOME_URL="https://www.centos.org/"
[2025-11-27 07:46:45] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 07:46:45] 
[2025-11-27 07:46:45] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 07:46:45] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 07:46:45] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 07:46:45] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 07:46:45] 
[2025-11-27 07:46:45] 2025-11-26 23:45:40,436 | INFO     | ***************************************
[2025-11-27 07:46:45] 2025-11-26 23:45:40,939 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/13
[2025-11-27 07:46:45] 2025-11-26 23:45:40,952 | INFO     | sufficient remaining disk space (445025091584 B)
[2025-11-27 07:46:45] 2025-11-26 23:45:40,952 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 07:46:45] 2025-11-26 23:45:40,952 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 07:46:45] 2025-11-26 23:45:40,952 | INFO     | update_server=False
[2025-11-27 07:46:45] 2025-11-26 23:45:40,952 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 07:46:45] 2025-11-26 23:45:40,953 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 07:46:45] 2025-11-26 23:45:41,207 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-27 07:46:45] 2025-11-26 23:45:41,207 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-27 07:46:45] 2025-11-26 23:45:41,207 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 07:46:45] 2025-11-26 23:45:41,207 | INFO     | will abort loop
[2025-11-27 07:46:45] 2025-11-26 23:45:41,418 | INFO     | all data control threads have been joined
[2025-11-27 07:46:45] 2025-11-26 23:45:41,506 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 07:46:45] 2025-11-26 23:45:41,919 | INFO     | all payload control threads have been joined
[2025-11-27 07:46:45] 2025-11-26 23:45:41,958 | INFO     | [job] retrieve thread has finished
[2025-11-27 07:46:45] 2025-11-26 23:45:42,092 | INFO     | [job] validate thread has finished
[2025-11-27 07:46:45] 2025-11-26 23:45:42,093 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 07:46:45] 2025-11-26 23:45:42,209 | INFO     | [job] job monitor thread has finished
[2025-11-27 07:46:45] 2025-11-26 23:45:42,234 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 07:46:45] 2025-11-26 23:45:42,322 | INFO     | all job control threads have been joined
[2025-11-27 07:46:45] 2025-11-26 23:45:42,423 | INFO     | [data] control thread has finished
[2025-11-27 07:46:45] 2025-11-26 23:45:42,557 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 07:46:45] 2025-11-26 23:45:42,584 | INFO     | [payload] failed_post thread has finished
[2025-11-27 07:46:45] 2025-11-26 23:45:42,675 | INFO     | [data] copytool_in thread has finished
[2025-11-27 07:46:45] 2025-11-26 23:45:42,920 | INFO     | [payload] control thread has finished
[2025-11-27 07:46:45] 2025-11-26 23:45:43,066 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 07:46:45] 2025-11-26 23:45:43,206 | INFO     | [payload] validate_post thread has finished
[2025-11-27 07:46:45] 2025-11-26 23:45:43,328 | INFO     | [job] control thread has finished
[2025-11-27 07:46:45] 2025-11-26 23:45:43,511 | INFO     | [data] copytool_out thread has finished
[2025-11-27 07:46:45] 2025-11-26 23:45:43,685 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 07:46:45] 2025-11-26 23:45:44,690 | INFO     | [job] queue monitor thread has finished
[2025-11-27 07:46:45] 2025-11-26 23:45:44,959 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 07:46:45] 2025-11-26 23:46:11,994 | INFO     | PID=113266 has CPU usage=3.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-27 07:46:45] 2025-11-26 23:46:11,995 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 07:46:45] 2025-11-26 23:46:11,995 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 07:46:45] 2025-11-26 23:46:11,995 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 07:46:45] 2025-11-26 23:46:36,693 | INFO     | [monitor] cgroup control has ended
[2025-11-27 07:46:45] 2025-11-26 23:46:38,791 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 134116433479488)>', '<ExcThread(monitor, started 134115588306688)>']
[2025-11-27 07:46:45] 2025-11-26 23:46:39,125 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 07:46:45] 2025-11-26 23:46:39,125 | INFO     | [monitor] control thread has ended
[2025-11-27 07:46:45] 2025-11-26 23:46:43,816 | INFO     | all workflow threads have been joined
[2025-11-27 07:46:45] 2025-11-26 23:46:43,816 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 07:46:45] 2025-11-26 23:46:43,816 | INFO     | traces error code: 0
[2025-11-27 07:46:45] 2025-11-26 23:46:43,817 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 07:46:45] 2025-11-26 23:46:43,897 [wrapper] ==== pilot stdout END ====
[2025-11-27 07:46:45] 2025-11-26 23:46:43,901 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 07:46:45] 2025-11-26 23:46:43,904 [wrapper] pilotpid: 113266
[2025-11-27 07:46:45] 2025-11-26 23:46:43,906 [wrapper] Pilot exit status: 0
[2025-11-27 07:46:45] 2025-11-26 23:46:43,914 [wrapper] pandaids: 6891558580
[2025-11-27 07:46:45] 2025-11-26 23:46:43,945 [wrapper] cleanup supervisor_pilot  198846 113267
[2025-11-27 07:46:45] 2025-11-26 23:46:43,948 [wrapper] Test setup, not cleaning
[2025-11-27 07:46:45] 2025-11-26 23:46:43,950 [wrapper] apfmon messages muted
[2025-11-27 07:46:45] 2025-11-26 23:46:43,952 [wrapper] ==== wrapper stdout END ====
[2025-11-27 07:46:45] 2025-11-26 23:46:43,954 [wrapper] ==== wrapper stderr END ====
[2025-11-27 07:46:45]  *** Error codes and diagnostics ***
[2025-11-27 07:46:45]     "exeErrorCode": 0,
[2025-11-27 07:46:45]     "exeErrorDiag": "",
[2025-11-27 07:46:45]     "pilotErrorCode": 0,
[2025-11-27 07:46:45]     "pilotErrorDiag": "",
[2025-11-27 07:46:45]  *** Listing of results directory ***
[2025-11-27 07:46:45] total 1328352
[2025-11-27 07:46:45] -rw-r--r-- 1 boinc boinc    576529 Nov 18 23:15 pilot3.tar.gz
[2025-11-27 07:46:45] -rwx------ 1 boinc boinc     36292 Nov 18 23:24 runpilot2-wrapper.sh
[2025-11-27 07:46:45] -rw-r--r-- 1 boinc boinc      5112 Nov 18 23:24 queuedata.json
[2025-11-27 07:46:45] -rw-r--r-- 1 boinc boinc       100 Nov 26 21:51 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 07:46:45] -rwxr-xr-x 1 boinc boinc      7986 Nov 26 21:51 run_atlas
[2025-11-27 07:46:45] -rw-r--r-- 1 boinc boinc       105 Nov 26 21:51 job.xml
[2025-11-27 07:46:45] -rw-r--r-- 2 boinc boinc 409688972 Nov 26 21:51 EVNT.47493065._000068.pool.root.1
[2025-11-27 07:46:45] -rw-r--r-- 2 boinc boinc     15120 Nov 26 21:51 start_atlas.sh
[2025-11-27 07:46:45] drwxrwx--x 2 boinc boinc      4096 Nov 26 21:51 shared
[2025-11-27 07:46:45] -rw-r--r-- 2 boinc boinc    590093 Nov 26 21:51 input.tar.gz
[2025-11-27 07:46:45] -rw-r--r-- 1 boinc boinc      6013 Nov 26 21:51 init_data.xml
[2025-11-27 07:46:45] -rw-r--r-- 1 boinc boinc         0 Nov 26 21:51 boinc_setup_complete
[2025-11-27 07:46:45] -rw-r--r-- 1 boinc boinc       110 Nov 26 21:51 stderr.txt
[2025-11-27 07:46:45] -rw-r--r-- 1 boinc boinc         0 Nov 26 21:51 boinc_lockfile
[2025-11-27 07:46:45] -rw-r--r-- 1 boinc boinc      2771 Nov 26 21:51 pandaJob.out
[2025-11-27 07:46:45] -rw------- 1 boinc boinc    991830 Nov 26 21:51 agis_schedconf.cvmfs.json
[2025-11-27 07:46:45] drwx------ 5 boinc boinc      4096 Nov 26 21:51 pilot3
[2025-11-27 07:46:45] -rw-r--r-- 1 boinc boinc       532 Nov 27 07:33 boinc_task_state.xml
[2025-11-27 07:46:45] -rw------- 1 boinc boinc 933049511 Nov 27 07:44 HITS.47493068._000679.pool.root.1
[2025-11-27 07:46:45] -rw------- 1 boinc boinc      1044 Nov 27 07:45 memory_monitor_summary.json
[2025-11-27 07:46:45] -rw------- 1 boinc boinc   1516240 Nov 27 07:45 agis_ddmendpoints.agis.ALL.json
[2025-11-27 07:46:45] -rw------- 1 boinc boinc   1849285 Nov 27 07:45 log.47493068._000679.job.log.tgz.1
[2025-11-27 07:46:45] -rw------- 1 boinc boinc      8637 Nov 27 07:45 heartbeat.json
[2025-11-27 07:46:45] -rw------- 1 boinc boinc        95 Nov 27 07:46 pilot_heartbeat.json
[2025-11-27 07:46:45] -rw-r--r-- 1 boinc boinc      8192 Nov 27 07:46 boinc_mmap_file
[2025-11-27 07:46:45] -rw-r--r-- 1 boinc boinc        29 Nov 27 07:46 wrapper_checkpoint.txt
[2025-11-27 07:46:45] -rw------- 1 boinc boinc      4942 Nov 27 07:46 pilotlog.txt
[2025-11-27 07:46:45] -rw------- 1 boinc boinc   4950619 Nov 27 07:46 log.47493068._000679.job.log.1
[2025-11-27 07:46:45] -rw------- 1 boinc boinc       353 Nov 27 07:46 output.list
[2025-11-27 07:46:45] -rw-r--r-- 1 boinc boinc       620 Nov 27 07:46 runtime_log
[2025-11-27 07:46:45] -rw------- 1 boinc boinc   6819840 Nov 27 07:46 result.tar.gz
[2025-11-27 07:46:45] -rw-r--r-- 1 boinc boinc      8865 Nov 27 07:46 runtime_log.err
[2025-11-27 07:46:45] -rw------- 1 boinc boinc       671 Nov 27 07:46 4N4LDmUkcf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmDLFKDmLyoNsm.diag
[2025-11-27 07:46:45] HITS file was successfully produced:
[2025-11-27 07:46:45] -rw------- 1 boinc boinc 933049511 Nov 27 07:44 shared/HITS.pool.root.1
[2025-11-27 07:46:45]  *** Contents of shared directory: ***
[2025-11-27 07:46:45] total 1318532
[2025-11-27 07:46:45] -rw-r--r-- 2 boinc boinc 409688972 Nov 26 21:51 ATLAS.root_0
[2025-11-27 07:46:45] -rw-r--r-- 2 boinc boinc     15120 Nov 26 21:51 start_atlas.sh
[2025-11-27 07:46:45] -rw-r--r-- 2 boinc boinc    590093 Nov 26 21:51 input.tar.gz
[2025-11-27 07:46:45] -rw------- 1 boinc boinc 933049511 Nov 27 07:44 HITS.pool.root.1
[2025-11-27 07:46:45] -rw------- 1 boinc boinc   6819840 Nov 27 07:46 result.tar.gz
07:46:45 (108905): run_atlas exited; CPU time 274338.565346
07:46:45 (108905): called boinc_finish(0)

</stderr_txt>
]]>

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