Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
08:20:08 (1780734): wrapper (7.7.26015): starting
08:20:08 (1780734): wrapper: running run_atlas (--nthreads 9)
[2025-11-26 08:20:08] Arguments: --nthreads 9
[2025-11-26 08:20:08] Threads: 9
[2025-11-26 08:20:08] Checking for CVMFS
[2025-11-26 08:20:08] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 08:20:08] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 08:20:08] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 08:20:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 08:20:08] 2.13.3.0 1933508 27304 232512 153323 0 313 22990299 32503808 46959 16776704 0 162591819 99.530 190871846 38036 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 08:20:08] CVMFS is ok
[2025-11-26 08:20:08] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 08:20:08] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 08:20:08] Further information can be found at the LHC@home message board.
[2025-11-26 08:20:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 08:20:08] Checking for apptainer binary...
[2025-11-26 08:20:08] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 08:20:08] Running /usr/bin/apptainer --version
[2025-11-26 08:20:08] apptainer version 1.4.4-1.el9
[2025-11-26 08:20:08] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 08:20:08] c7-3-16.aglt2.org
[2025-11-26 08:20:08] apptainer works
[2025-11-26 08:20:08] Set ATHENA_PROC_NUMBER=9
[2025-11-26 08:20:08] Set ATHENA_CORE_NUMBER=9
[2025-11-26 08:20:09] Starting ATLAS job with PandaID=6896577552
[2025-11-26 08:20:09] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
16:49:06 (3068076): wrapper (7.7.26015): starting
16:49:06 (3068076): wrapper: running run_atlas (--nthreads 10)
[2025-11-26 16:49:06] Arguments: --nthreads 10
[2025-11-26 16:49:06] Threads: 10
[2025-11-26 16:49:06] This job has been restarted, cleaning up previous attempt
[2025-11-26 16:49:06] Checking for CVMFS
[2025-11-26 16:49:06] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 16:49:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 16:49:06] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 16:49:06] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 16:49:06] 2.13.3.0 1933508 27813 341072 153335 0 686 31997761 32503808 53695 16776704 0 172343951 99.540 197399577 37666 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 16:49:06] CVMFS is ok
[2025-11-26 16:49:06] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 16:49:06] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 16:49:06] Further information can be found at the LHC@home message board.
[2025-11-26 16:49:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 16:49:06] Checking for apptainer binary...
[2025-11-26 16:49:06] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 16:49:06] Running /usr/bin/apptainer --version
[2025-11-26 16:49:07] apptainer version 1.4.4-1.el9
[2025-11-26 16:49:07] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 16:49:07] c7-3-16.aglt2.org
[2025-11-26 16:49:07] apptainer works
[2025-11-26 16:49:07] Set ATHENA_PROC_NUMBER=10
[2025-11-26 16:49:07] Set ATHENA_CORE_NUMBER=10
[2025-11-26 16:49:07] Starting ATLAS job with PandaID=6896577552
[2025-11-26 16:49:07] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
18:20:16 (3068076): BOINC client no longer exists - exiting
18:20:16 (3068076): timer handler: client dead, exiting
18:29:53 (66948): wrapper (7.7.26015): starting
18:29:53 (66948): wrapper: running run_atlas (--nthreads 10)
[2025-11-26 18:29:53] Arguments: --nthreads 10
[2025-11-26 18:29:53] Threads: 10
[2025-11-26 18:29:53] This job has been restarted, cleaning up previous attempt
[2025-11-26 18:29:53] Checking for CVMFS
[2025-11-26 18:29:53] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 18:29:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 18:29:53] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 18:29:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 18:29:53] 2.13.3.0 1933508 27913 319320 153340 0 165 31198774 32503808 54073 16776704 0 175435882 99.537 202278147 37380 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 18:29:53] CVMFS is ok
[2025-11-26 18:29:53] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 18:29:53] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 18:29:53] Further information can be found at the LHC@home message board.
[2025-11-26 18:29:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 18:29:53] Checking for apptainer binary...
[2025-11-26 18:29:53] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 18:29:53] Running /usr/bin/apptainer --version
[2025-11-26 18:29:53] apptainer version 1.4.4-1.el9
[2025-11-26 18:29:53] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 18:29:53] c7-3-16.aglt2.org
[2025-11-26 18:29:53] apptainer works
[2025-11-26 18:29:53] Set ATHENA_PROC_NUMBER=10
[2025-11-26 18:29:53] Set ATHENA_CORE_NUMBER=10
[2025-11-26 18:29:53] Starting ATLAS job with PandaID=6896577552
[2025-11-26 18:29:53] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 12:12:59]  *** The last 200 lines of the pilot log: ***
[2025-11-27 12:12:59] 2025-11-27 17:12:12,645 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 12:12:59] 2025-11-27 17:12:14,011 | INFO     | PID=93290 has CPU usage=19.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-27 12:12:59] 2025-11-27 17:12:14,011 | INFO     | .. there are 96 such processes running
[2025-11-27 12:12:59] 2025-11-27 17:12:14,409 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 12:12:59] 2025-11-27 17:12:14,415 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3308.4403333333325
[2025-11-27 12:12:59] 2025-11-27 17:12:14,431 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6896577552/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 12:12:59] 2025-11-27 17:12:14,432 | INFO     | extracted standard info from prmon json
[2025-11-27 12:12:59] 2025-11-27 17:12:14,432 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 12:12:59] 2025-11-27 17:12:14,432 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 12:12:59] 2025-11-27 17:12:14,447 | INFO     | fitting pss+swap vs Time
[2025-11-27 12:12:59] 2025-11-27 17:12:14,464 | INFO     | sum of square deviations: 353852263483.6212
[2025-11-27 12:12:59] 2025-11-27 17:12:14,533 | INFO     | sum of deviations: 2493078944675.9985
[2025-11-27 12:12:59] 2025-11-27 17:12:14,534 | INFO     | mean x: 1764231672.9052632
[2025-11-27 12:12:59] 2025-11-27 17:12:14,534 | INFO     | mean y: 3351610.1818181816
[2025-11-27 12:12:59] 2025-11-27 17:12:14,534 | INFO     | intersect: -12426606570.527157
[2025-11-27 12:12:59] 2025-11-27 17:12:14,535 | INFO     | chi2: 7.3661842622318705
[2025-11-27 12:12:59] 2025-11-27 17:12:14,535 | INFO     | sum of square deviations: 348797536299.5035
[2025-11-27 12:12:59] 2025-11-27 17:12:14,554 | INFO     | sum of deviations: 2938570658468.7993
[2025-11-27 12:12:59] 2025-11-27 17:12:14,554 | INFO     | mean x: 1764231520.4096153
[2025-11-27 12:12:59] 2025-11-27 17:12:14,554 | INFO     | mean y: 3365049.2
[2025-11-27 12:12:59] 2025-11-27 17:12:14,554 | INFO     | intersect: -14860039766.165014
[2025-11-27 12:12:59] 2025-11-27 17:12:14,555 | INFO     | chi2: 3.6735114295814157
[2025-11-27 12:12:59] 2025-11-27 17:12:14,555 | INFO     | current chi2=3.6735114295814157 (change=50.130063289125715 %)
[2025-11-27 12:12:59] 2025-11-27 17:12:14,556 | INFO     | sum of square deviations: 343791182115.34674
[2025-11-27 12:12:59] 2025-11-27 17:12:14,577 | INFO     | sum of deviations: 3184025756735.992
[2025-11-27 12:12:59] 2025-11-27 17:12:14,577 | INFO     | mean x: 1764231367.9140096
[2025-11-27 12:12:59] 2025-11-27 17:12:14,577 | INFO     | mean y: 3372523.57294686
[2025-11-27 12:12:59] 2025-11-27 17:12:14,577 | INFO     | intersect: -16336075398.611042
[2025-11-27 12:12:59] 2025-11-27 17:12:14,578 | INFO     | chi2: 2.3887412769193332
[2025-11-27 12:12:59] 2025-11-27 17:12:14,578 | INFO     | current chi2=2.3887412769193332 (change=34.973898333793336 %)
[2025-11-27 12:12:59] 2025-11-27 17:12:14,579 | INFO     | sum of square deviations: 338832905356.4863
[2025-11-27 12:12:59] 2025-11-27 17:12:14,608 | INFO     | sum of deviations: 3250952597395.301
[2025-11-27 12:12:59] 2025-11-27 17:12:14,608 | INFO     | mean x: 1764231215.4174757
[2025-11-27 12:12:59] 2025-11-27 17:12:14,608 | INFO     | mean y: 3374574.1388349514
[2025-11-27 12:12:59] 2025-11-27 17:12:14,625 | INFO     | intersect: -16923647452.051506
[2025-11-27 12:12:59] 2025-11-27 17:12:14,627 | INFO     | chi2: 2.057890540076322
[2025-11-27 12:12:59] 2025-11-27 17:12:14,629 | INFO     | current chi2=2.057890540076322 (change=13.850421560500545 %)
[2025-11-27 12:12:59] 2025-11-27 17:12:14,629 | INFO     | right removable region: 1029
[2025-11-27 12:12:59] 2025-11-27 17:12:14,630 | INFO     | sum of square deviations: 348797086609.13824
[2025-11-27 12:12:59] 2025-11-27 17:12:14,651 | INFO     | sum of deviations: 2220654088983.4805
[2025-11-27 12:12:59] 2025-11-27 17:12:14,651 | INFO     | mean x: 1764231825.4076922
[2025-11-27 12:12:59] 2025-11-27 17:12:14,651 | INFO     | mean y: 3359816.6403846154
[2025-11-27 12:12:59] 2025-11-27 17:12:14,651 | INFO     | intersect: -11228811458.335337
[2025-11-27 12:12:59] 2025-11-27 17:12:14,652 | INFO     | chi2: 5.7453313000355966
[2025-11-27 12:12:59] 2025-11-27 17:12:14,652 | INFO     | current chi2=5.7453313000355966 (change=22.003969823382803 %)
[2025-11-27 12:12:59] 2025-11-27 17:12:14,652 | INFO     | left removable region: 10
[2025-11-27 12:12:59] 2025-11-27 17:12:14,653 | INFO     | sum of square deviations: 328092428652.23956
[2025-11-27 12:12:59] 2025-11-27 17:12:14,684 | INFO     | sum of deviations: 2842057114813.083
[2025-11-27 12:12:59] 2025-11-27 17:12:14,684 | INFO     | mean x: 1764231489.9185476
[2025-11-27 12:12:59] 2025-11-27 17:12:14,684 | INFO     | mean y: 3386765.000981354
[2025-11-27 12:12:59] 2025-11-27 17:12:14,684 | INFO     | intersect: -15279034346.322239
[2025-11-27 12:12:59] 2025-11-27 17:12:14,685 | INFO     | chi2: 0.2591737369755502
[2025-11-27 12:12:59] 2025-11-27 17:12:14,685 | INFO     | current memory leak: 8.66 B/s (using 1019 data points, chi2=0.26)
[2025-11-27 12:12:59] 2025-11-27 17:12:14,687 | INFO     | could have reported an average CPU frequency of 3304 MHz (39 samples)
[2025-11-27 12:12:59] 2025-11-27 17:12:14,687 | INFO     | ..............................
[2025-11-27 12:12:59] 2025-11-27 17:12:14,687 | INFO     | . Timing measurements:
[2025-11-27 12:12:59] 2025-11-27 17:12:14,687 | INFO     | . get job = 0 s
[2025-11-27 12:12:59] 2025-11-27 17:12:14,687 | INFO     | . initial setup = 0 s
[2025-11-27 12:12:59] 2025-11-27 17:12:14,687 | INFO     | . payload setup = 6 s
[2025-11-27 12:12:59] 2025-11-27 17:12:14,687 | INFO     | . stage-in = 0 s
[2025-11-27 12:12:59] 2025-11-27 17:12:14,687 | INFO     | . payload execution = 63691 s
[2025-11-27 12:12:59] 2025-11-27 17:12:14,688 | INFO     | . stage-out = 4 s
[2025-11-27 12:12:59] 2025-11-27 17:12:14,688 | INFO     | . log creation = 1 s
[2025-11-27 12:12:59] 2025-11-27 17:12:14,688 | INFO     | ..............................
[2025-11-27 12:12:59] 2025-11-27 17:12:14,770 | INFO     | 
[2025-11-27 12:12:59] 2025-11-27 17:12:14,771 | INFO     | job summary report
[2025-11-27 12:12:59] 2025-11-27 17:12:14,772 | INFO     | --------------------------------------------------
[2025-11-27 12:12:59] 2025-11-27 17:12:14,772 | INFO     | PanDA job id: 6896577552
[2025-11-27 12:12:59] 2025-11-27 17:12:14,772 | INFO     | task id: 47556161
[2025-11-27 12:12:59] 2025-11-27 17:12:14,772 | INFO     | errors: (none)
[2025-11-27 12:12:59] 2025-11-27 17:12:14,772 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 12:12:59] 2025-11-27 17:12:14,772 | INFO     | pilot state: finished 
[2025-11-27 12:12:59] 2025-11-27 17:12:14,772 | INFO     | transexitcode: 0
[2025-11-27 12:12:59] 2025-11-27 17:12:14,772 | INFO     | exeerrorcode: 0
[2025-11-27 12:12:59] 2025-11-27 17:12:14,772 | INFO     | exeerrordiag: 
[2025-11-27 12:12:59] 2025-11-27 17:12:14,772 | INFO     | exitcode: 0
[2025-11-27 12:12:59] 2025-11-27 17:12:14,772 | INFO     | exitmsg: OK
[2025-11-27 12:12:59] 2025-11-27 17:12:14,772 | INFO     | cpuconsumptiontime: 190653 s
[2025-11-27 12:12:59] 2025-11-27 17:12:14,772 | INFO     | nevents: 1000
[2025-11-27 12:12:59] 2025-11-27 17:12:14,772 | INFO     | neventsw: 0
[2025-11-27 12:12:59] 2025-11-27 17:12:14,772 | INFO     | pid: 141665
[2025-11-27 12:12:59] 2025-11-27 17:12:14,772 | INFO     | pgrp: 141665
[2025-11-27 12:12:59] 2025-11-27 17:12:14,772 | INFO     | corecount: 10
[2025-11-27 12:12:59] 2025-11-27 17:12:14,772 | INFO     | event service: False
[2025-11-27 12:12:59] 2025-11-27 17:12:14,772 | INFO     | sizes: {0: 2284211, 1: 2284211, 5: 2284501, 11: 2284557, 63701: 2339656, 63707: 2348678, 63710: 2348862, 63717: 2349108}
[2025-11-27 12:12:59] 2025-11-27 17:12:14,772 | INFO     | --------------------------------------------------
[2025-11-27 12:12:59] 2025-11-27 17:12:14,773 | INFO     | 
[2025-11-27 12:12:59] 2025-11-27 17:12:14,773 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-27 12:12:59] 2025-11-27 17:12:14,846 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 12:12:59] 2025-11-27 17:12:14,846 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 12:12:59] 2025-11-27 17:12:14,846 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 12:12:59] 2025-11-27 17:12:14,847 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 12:12:59] 2025-11-27 17:12:14,847 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 12:12:59] 2025-11-27 17:12:14,847 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 12:12:59] 2025-11-27 17:12:14,847 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 12:12:59] 2025-11-27 17:12:14,847 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 12:12:59] 2025-11-27 17:12:14,847 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 12:12:59] 2025-11-27 17:12:14,847 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 12:12:59] 2025-11-27 17:12:14,847 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 12:12:59] 2025-11-27 17:12:14,847 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 12:12:59] 2025-11-27 17:12:14,847 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 12:12:59] 2025-11-27 17:12:14,847 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 12:12:59] 2025-11-27 17:12:14,847 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 12:12:59] 2025-11-27 17:12:14,847 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 12:12:59] 2025-11-27 17:12:14,847 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 12:12:59] 2025-11-27 17:12:14,847 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 12:12:59] 2025-11-27 17:12:14,847 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 12:12:59] 2025-11-27 17:12:14,848 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 12:12:59] 2025-11-27 17:12:14,848 | INFO     | job 6896577552 has completed (purged errors)
[2025-11-27 12:12:59] 2025-11-27 17:12:14,848 | INFO     | overall cleanup function is called
[2025-11-27 12:12:59] 2025-11-27 17:12:15,872 | INFO     | --- collectZombieJob: --- 10, [141665]
[2025-11-27 12:12:59] 2025-11-27 17:12:15,873 | INFO     | zombie collector waiting for pid 141665
[2025-11-27 12:12:59] 2025-11-27 17:12:15,873 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 12:12:59] 2025-11-27 17:12:15,873 | INFO     | collected zombie processes
[2025-11-27 12:12:59] 2025-11-27 17:12:15,873 | INFO     | will attempt to kill all subprocesses of pid=141665
[2025-11-27 12:12:59] 2025-11-27 17:12:16,951 | INFO     | process IDs to be killed: [141665] (in reverse order)
[2025-11-27 12:12:59] 2025-11-27 17:12:17,207 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 12:12:59] 2025-11-27 17:12:17,207 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 12:12:59] 2025-11-27 17:12:17,249 | INFO     | did not find any defunct processes belonging to 141665
[2025-11-27 12:12:59] 2025-11-27 17:12:17,295 | INFO     | did not find any defunct processes belonging to 141665
[2025-11-27 12:12:59] 2025-11-27 17:12:17,304 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 12:12:59] 2025-11-27 17:12:17,305 | INFO     | ready for new job
[2025-11-27 12:12:59] 2025-11-27 17:12:17,305 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 12:12:59] 2025-11-27 17:12:17,310 | INFO     | ***************************************
[2025-11-27 12:12:59] 2025-11-27 17:12:17,310 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 12:12:59] 2025-11-27 17:12:17,310 | INFO     | ***************************************
[2025-11-27 12:12:59] 2025-11-27 17:12:17,310 | INFO     | 
[2025-11-27 12:12:59] 2025-11-27 17:12:17,362 | INFO     | architecture information:
[2025-11-27 12:12:59] 2025-11-27 17:12:17,381 | INFO     | executing command: cat /etc/os-release
[2025-11-27 12:12:59] 2025-11-27 17:12:17,399 | INFO     | cat /etc/os-release:
[2025-11-27 12:12:59] NAME="CentOS Linux"
[2025-11-27 12:12:59] VERSION="7 (Core)"
[2025-11-27 12:12:59] ID="centos"
[2025-11-27 12:12:59] ID_LIKE="rhel fedora"
[2025-11-27 12:12:59] VERSION_ID="7"
[2025-11-27 12:12:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 12:12:59] ANSI_COLOR="0;31"
[2025-11-27 12:12:59] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 12:12:59] HOME_URL="https://www.centos.org/"
[2025-11-27 12:12:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 12:12:59] 
[2025-11-27 12:12:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 12:12:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 12:12:59] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 12:12:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 12:12:59] 
[2025-11-27 12:12:59] 2025-11-27 17:12:17,400 | INFO     | ***************************************
[2025-11-27 12:12:59] 2025-11-27 17:12:17,903 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-27 12:12:59] 2025-11-27 17:12:17,939 | INFO     | sufficient remaining disk space (86073409536 B)
[2025-11-27 12:12:59] 2025-11-27 17:12:17,939 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 12:12:59] 2025-11-27 17:12:17,939 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 12:12:59] 2025-11-27 17:12:17,939 | INFO     | update_server=False
[2025-11-27 12:12:59] 2025-11-27 17:12:17,939 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 12:12:59] 2025-11-27 17:12:17,976 | INFO     | all data control threads have been joined
[2025-11-27 12:12:59] 2025-11-27 17:12:17,979 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 12:12:59] 2025-11-27 17:12:18,062 | INFO     | all job control threads have been joined
[2025-11-27 12:12:59] 2025-11-27 17:12:18,310 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 12:12:59] 2025-11-27 17:12:18,710 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 12:12:59] 2025-11-27 17:12:18,711 | INFO     | aborting loop
[2025-11-27 12:12:59] 2025-11-27 17:12:18,874 | INFO     | all payload control threads have been joined
[2025-11-27 12:12:59] 2025-11-27 17:12:18,945 | INFO     | [job] retrieve thread has finished
[2025-11-27 12:12:59] 2025-11-27 17:12:18,965 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 12:12:59] 2025-11-27 17:12:18,983 | INFO     | [data] control thread has finished
[2025-11-27 12:12:59] 2025-11-27 17:12:19,073 | INFO     | [job] control thread has finished
[2025-11-27 12:12:59] 2025-11-27 17:12:19,424 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 12:12:59] 2025-11-27 17:12:19,621 | INFO     | [payload] validate_post thread has finished
[2025-11-27 12:12:59] 2025-11-27 17:12:19,641 | INFO     | [job] validate thread has finished
[2025-11-27 12:12:59] 2025-11-27 17:12:19,716 | INFO     | [job] job monitor thread has finished
[2025-11-27 12:12:59] 2025-11-27 17:12:19,774 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 12:12:59] 2025-11-27 17:12:19,800 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 12:12:59] 2025-11-27 17:12:19,901 | INFO     | [payload] control thread has finished
[2025-11-27 12:12:59] 2025-11-27 17:12:19,923 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 12:12:59] 2025-11-27 17:12:19,991 | INFO     | [data] copytool_out thread has finished
[2025-11-27 12:12:59] 2025-11-27 17:12:20,367 | INFO     | [data] copytool_in thread has finished
[2025-11-27 12:12:59] 2025-11-27 17:12:20,388 | INFO     | [payload] failed_post thread has finished
[2025-11-27 12:12:59] 2025-11-27 17:12:20,806 | INFO     | [job] queue monitor thread has finished
[2025-11-27 12:12:59] 2025-11-27 17:12:22,318 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 12:12:59] 2025-11-27 17:12:47,142 | INFO     | PID=93290 has CPU usage=6.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-27 12:12:59] 2025-11-27 17:12:47,143 | INFO     | .. there are 96 such processes running
[2025-11-27 12:12:59] 2025-11-27 17:12:47,143 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 12:12:59] 2025-11-27 17:12:47,143 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 12:12:59] 2025-11-27 17:12:47,144 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 12:12:59] 2025-11-27 17:12:53,259 | INFO     | [monitor] cgroup control has ended
[2025-11-27 12:12:59] 2025-11-27 17:12:53,477 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140185107367744)>', '<ExcThread(monitor, started 140184620353280)>']
[2025-11-27 12:12:59] 2025-11-27 17:12:54,186 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 12:12:59] 2025-11-27 17:12:54,186 | INFO     | [monitor] control thread has ended
[2025-11-27 12:12:59] 2025-11-27 17:12:58,503 | INFO     | all workflow threads have been joined
[2025-11-27 12:12:59] 2025-11-27 17:12:58,503 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 12:12:59] 2025-11-27 17:12:58,504 | INFO     | traces error code: 0
[2025-11-27 12:12:59] 2025-11-27 17:12:58,504 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 12:12:59] 2025-11-27 17:12:58,753 [wrapper] ==== pilot stdout END ====
[2025-11-27 12:12:59] 2025-11-27 17:12:58,758 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 12:12:59] 2025-11-27 17:12:58,761 [wrapper] pilotpid: 93290
[2025-11-27 12:12:59] 2025-11-27 17:12:58,767 [wrapper] Pilot exit status: 0
[2025-11-27 12:12:59] 2025-11-27 17:12:58,800 [wrapper] pandaids: 6896577552 6896577552 6896577552
[2025-11-27 12:12:59] 2025-11-27 17:12:58,963 [wrapper] cleanup supervisor_pilot  453533 93291
[2025-11-27 12:12:59] 2025-11-27 17:12:58,973 [wrapper] Test setup, not cleaning
[2025-11-27 12:12:59] 2025-11-27 17:12:58,976 [wrapper] apfmon messages muted
[2025-11-27 12:12:59] 2025-11-27 17:12:58,978 [wrapper] ==== wrapper stdout END ====
[2025-11-27 12:12:59] 2025-11-27 17:12:58,980 [wrapper] ==== wrapper stderr END ====
[2025-11-27 12:12:59]  *** Error codes and diagnostics ***
[2025-11-27 12:12:59]     "exeErrorCode": 0,
[2025-11-27 12:12:59]     "exeErrorDiag": "",
[2025-11-27 12:12:59]     "pilotErrorCode": 0,
[2025-11-27 12:12:59]     "pilotErrorDiag": "",
[2025-11-27 12:12:59]  *** Listing of results directory ***
[2025-11-27 12:12:59] total 1713464
[2025-11-27 12:12:59] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-27 12:12:59] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 00:11 queuedata.json
[2025-11-27 12:12:59] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 00:12 pilot3.tar.gz
[2025-11-27 12:12:59] -rwx------. 1 boincer umatlas     36292 Nov 25 00:15 runpilot2-wrapper.sh
[2025-11-27 12:12:59] -rw-r--r--. 1 boincer umatlas       100 Nov 26 08:20 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 12:12:59] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 08:20 run_atlas
[2025-11-27 12:12:59] -rw-r--r--. 1 boincer umatlas       105 Nov 26 08:20 job.xml
[2025-11-27 12:12:59] -rw-r--r--. 3 boincer umatlas 409281486 Nov 26 08:20 EVNT.47483658._002095.pool.root.1
[2025-11-27 12:12:59] -rw-r--r--. 3 boincer umatlas 409281486 Nov 26 08:20 ATLAS.root_0
[2025-11-27 12:12:59] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 08:20 start_atlas.sh
[2025-11-27 12:12:59] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 08:20 shared
[2025-11-27 12:12:59] -rw-r--r--. 2 boincer umatlas    590107 Nov 26 08:20 input.tar.gz
[2025-11-27 12:12:59] -rw-r--r--. 1 boincer umatlas         0 Nov 26 08:20 boinc_lockfile
[2025-11-27 12:12:59] -rw-r--r--. 1 boincer umatlas      2783 Nov 26 18:29 pandaJob.out
[2025-11-27 12:12:59] -rw-------. 1 boincer umatlas        57 Nov 26 18:29 setup.sh.local
[2025-11-27 12:12:59] -rw-------. 1 boincer umatlas    991538 Nov 26 18:30 agis_schedconf.cvmfs.json
[2025-11-27 12:12:59] -rw-r--r--. 1 boincer umatlas       533 Nov 27 11:59 boinc_task_state.xml
[2025-11-27 12:12:59] -rw-r--r--. 1 boincer umatlas      6947 Nov 27 12:03 init_data.xml
[2025-11-27 12:12:59] -rw-------. 1 boincer umatlas 910848482 Nov 27 12:11 HITS.47556161._000783.pool.root.1
[2025-11-27 12:12:59] -rw-------. 1 boincer umatlas      1072 Nov 27 12:11 memory_monitor_summary.json
[2025-11-27 12:12:59] -rw-------. 1 boincer umatlas   1516240 Nov 27 12:12 agis_ddmendpoints.agis.ALL.json
[2025-11-27 12:12:59] -rw-------. 1 boincer umatlas   2405308 Nov 27 12:12 log.47556161._000783.job.log.tgz.1
[2025-11-27 12:12:59] -rw-------. 1 boincer umatlas      8620 Nov 27 12:12 heartbeat.json
[2025-11-27 12:12:59] -rw-------. 1 boincer umatlas        96 Nov 27 12:12 pilot_heartbeat.json
[2025-11-27 12:12:59] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 12:12 boinc_mmap_file
[2025-11-27 12:12:59] -rw-r--r--. 1 boincer umatlas        29 Nov 27 12:12 wrapper_checkpoint.txt
[2025-11-27 12:12:59] -rw-------. 1 boincer umatlas      4822 Nov 27 12:12 pilotlog.txt
[2025-11-27 12:12:59] -rw-------. 1 boincer umatlas   8210824 Nov 27 12:12 log.47556161._000783.job.log.1
[2025-11-27 12:12:59] -rw-------. 1 boincer umatlas       353 Nov 27 12:12 output.list
[2025-11-27 12:12:59] -rw-r--r--. 1 boincer umatlas       620 Nov 27 12:12 runtime_log
[2025-11-27 12:12:59] -rw-------. 1 boincer umatlas  10639360 Nov 27 12:12 result.tar.gz
[2025-11-27 12:12:59] -rw-r--r--. 1 boincer umatlas      9425 Nov 27 12:12 runtime_log.err
[2025-11-27 12:12:59] -rw-------. 1 boincer umatlas       915 Nov 27 12:12 RnjNDmhZ0h8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmN9LKDmcwSBln.diag
[2025-11-27 12:12:59] -rw-r--r--. 1 boincer umatlas     25876 Nov 27 12:12 stderr.txt
[2025-11-27 12:12:59] HITS file was successfully produced:
[2025-11-27 12:12:59] -rw-------. 1 boincer umatlas 910848482 Nov 27 12:11 shared/HITS.pool.root.1
[2025-11-27 12:12:59]  *** Contents of shared directory: ***
[2025-11-27 12:12:59] total 1300192
[2025-11-27 12:12:59] -rw-r--r--. 3 boincer umatlas 409281486 Nov 26 08:20 ATLAS.root_0
[2025-11-27 12:12:59] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 08:20 start_atlas.sh
[2025-11-27 12:12:59] -rw-r--r--. 2 boincer umatlas    590107 Nov 26 08:20 input.tar.gz
[2025-11-27 12:12:59] -rw-------. 1 boincer umatlas 910848482 Nov 27 12:11 HITS.pool.root.1
[2025-11-27 12:12:59] -rw-------. 1 boincer umatlas  10639360 Nov 27 12:12 result.tar.gz
12:13:00 (66948): run_atlas exited; CPU time 192541.081496
12:13:00 (66948): called boinc_finish(0)

</stderr_txt>
]]>

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