Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
13:40:13 (345421): wrapper (7.7.26015): starting
13:40:13 (345421): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 13:40:13] Arguments: --nthreads 8
[2025-11-26 13:40:13] Threads: 8
[2025-11-26 13:40:13] Checking for CVMFS
[2025-11-26 13:40:13] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 13:40:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 13:40:14] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 13:40:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 13:40:15] 2.13.3.0 12004 30376 370484 153331 3 468 32131384 32935937 39506 16776704 0 159170881 99.514 187239040 33352 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 13:40:15] CVMFS is ok
[2025-11-26 13:40:15] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 13:40:15] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 13:40:15] Further information can be found at the LHC@home message board.
[2025-11-26 13:40:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 13:40:15] Checking for apptainer binary...
[2025-11-26 13:40:15] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 13:40:15] Running /usr/bin/apptainer --version
[2025-11-26 13:40:15] apptainer version 1.4.4-1.el9
[2025-11-26 13:40:15] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 13:40:15] c6-12-29-4.aglt2.org
[2025-11-26 13:40:15] apptainer works
[2025-11-26 13:40:16] Set ATHENA_PROC_NUMBER=8
[2025-11-26 13:40:16] Set ATHENA_CORE_NUMBER=8
[2025-11-26 13:40:16] Starting ATLAS job with PandaID=6896577597
[2025-11-26 13:40:16] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 10:50:43]  *** The last 200 lines of the pilot log: ***
[2025-11-27 10:50:43] 2025-11-27 15:49:52,183 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 10:50:43] 2025-11-27 15:49:54,127 | INFO     | time since job start (76118s) is within the limit (172800.0s)
[2025-11-27 10:50:43] 2025-11-27 15:49:54,693 | INFO     | monitor loop #4165: job 0:6896577597 is in state 'finished'
[2025-11-27 10:50:43] 2025-11-27 15:49:54,693 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 10:50:43] 2025-11-27 15:49:56,146 | INFO     | time since job start (76120s) is within the limit (172800.0s)
[2025-11-27 10:50:43] 2025-11-27 15:49:57,212 | INFO     | monitor loop #4166: job 0:6896577597 is in state 'finished'
[2025-11-27 10:50:43] 2025-11-27 15:49:57,213 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 10:50:43] 2025-11-27 15:49:58,156 | INFO     | time since job start (76122s) is within the limit (172800.0s)
[2025-11-27 10:50:43] 2025-11-27 15:49:59,726 | INFO     | monitor loop #4167: job 0:6896577597 is in state 'finished'
[2025-11-27 10:50:43] 2025-11-27 15:49:59,726 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 10:50:43] 2025-11-27 15:50:00,182 | INFO     | time since job start (76124s) is within the limit (172800.0s)
[2025-11-27 10:50:43] 2025-11-27 15:50:02,190 | INFO     | time since job start (76126s) is within the limit (172800.0s)
[2025-11-27 10:50:43] 2025-11-27 15:50:02,240 | INFO     | monitor loop #4168: job 0:6896577597 is in state 'finished'
[2025-11-27 10:50:43] 2025-11-27 15:50:02,243 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 10:50:43] 2025-11-27 15:50:03,686 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 10:50:43] 2025-11-27 15:50:03,739 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2664.6983125000006
[2025-11-27 10:50:43] 2025-11-27 15:50:03,817 | INFO     | using path: /tmp/boinchome/slots/4/PanDA_Pilot-6896577597/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 10:50:43] 2025-11-27 15:50:03,842 | INFO     | extracted standard info from prmon json
[2025-11-27 10:50:43] 2025-11-27 15:50:03,842 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 10:50:43] 2025-11-27 15:50:03,842 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 10:50:43] 2025-11-27 15:50:03,999 | INFO     | fitting pss+swap vs Time
[2025-11-27 10:50:43] 2025-11-27 15:50:04,000 | INFO     | sum of square deviations: 598413308330.1975
[2025-11-27 10:50:43] 2025-11-27 15:50:04,034 | INFO     | sum of deviations: 2713444623980.326
[2025-11-27 10:50:43] 2025-11-27 15:50:04,038 | INFO     | mean x: 1764220560.3228915
[2025-11-27 10:50:43] 2025-11-27 15:50:04,039 | INFO     | mean y: 2922976.9742971887
[2025-11-27 10:50:43] 2025-11-27 15:50:04,039 | INFO     | intersect: -7996756723.133967
[2025-11-27 10:50:43] 2025-11-27 15:50:04,040 | INFO     | chi2: 20.418454516110756
[2025-11-27 10:50:43] 2025-11-27 15:50:04,042 | INFO     | sum of square deviations: 591234996318.192
[2025-11-27 10:50:43] 2025-11-27 15:50:04,223 | INFO     | time since job start (76128s) is within the limit (172800.0s)
[2025-11-27 10:50:43] 2025-11-27 15:50:04,225 | INFO     | sum of deviations: 3124953814071.7065
[2025-11-27 10:50:43] 2025-11-27 15:50:04,225 | INFO     | mean x: 1764220407.8475807
[2025-11-27 10:50:43] 2025-11-27 15:50:04,225 | INFO     | mean y: 2931716.1677419357
[2025-11-27 10:50:43] 2025-11-27 15:50:04,225 | INFO     | intersect: -9321799273.53738
[2025-11-27 10:50:43] 2025-11-27 15:50:04,227 | INFO     | chi2: 17.250893849520388
[2025-11-27 10:50:43] 2025-11-27 15:50:04,227 | INFO     | current chi2=17.250893849520388 (change=15.513224392625165 %)
[2025-11-27 10:50:43] 2025-11-27 15:50:04,227 | INFO     | right removable region: 1239
[2025-11-27 10:50:43] 2025-11-27 15:50:04,292 | INFO     | sum of square deviations: 591230270209.498
[2025-11-27 10:50:43] 2025-11-27 15:50:04,796 | INFO     | monitor loop #4169: job 0:6896577597 is in state 'finished'
[2025-11-27 10:50:43] 2025-11-27 15:50:04,796 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 10:50:43] 2025-11-27 15:50:04,810 | INFO     | sum of deviations: 2222560472808.722
[2025-11-27 10:50:43] 2025-11-27 15:50:04,810 | INFO     | mean x: 1764220712.848387
[2025-11-27 10:50:43] 2025-11-27 15:50:04,810 | INFO     | mean y: 2933399.014516129
[2025-11-27 10:50:43] 2025-11-27 15:50:04,810 | INFO     | intersect: -6629147905.445494
[2025-11-27 10:50:43] 2025-11-27 15:50:04,812 | INFO     | chi2: 16.620254180529013
[2025-11-27 10:50:43] 2025-11-27 15:50:04,812 | INFO     | current chi2=16.620254180529013 (change=18.60180129002835 %)
[2025-11-27 10:50:43] 2025-11-27 15:50:04,812 | INFO     | left removable region: 10
[2025-11-27 10:50:43] 2025-11-27 15:50:04,821 | INFO     | sum of square deviations: 575636039099.8235
[2025-11-27 10:50:43] 2025-11-27 15:50:04,906 | INFO     | sum of deviations: 2354572227167.671
[2025-11-27 10:50:43] 2025-11-27 15:50:04,906 | INFO     | mean x: 1764220682.4035802
[2025-11-27 10:50:43] 2025-11-27 15:50:04,906 | INFO     | mean y: 2951593.2123677786
[2025-11-27 10:50:43] 2025-11-27 15:50:04,906 | INFO     | intersect: -7213387793.526247
[2025-11-27 10:50:43] 2025-11-27 15:50:04,928 | INFO     | chi2: 10.925083747554263
[2025-11-27 10:50:43] 2025-11-27 15:50:04,928 | INFO     | current memory leak: 4.09 B/s (using 1229 data points, chi2=10.93)
[2025-11-27 10:50:43] 2025-11-27 15:50:04,930 | INFO     | could have reported an average CPU frequency of 2628 MHz (45 samples)
[2025-11-27 10:50:43] 2025-11-27 15:50:04,930 | INFO     | ..............................
[2025-11-27 10:50:43] 2025-11-27 15:50:04,930 | INFO     | . Timing measurements:
[2025-11-27 10:50:43] 2025-11-27 15:50:04,930 | INFO     | . get job = 0 s
[2025-11-27 10:50:43] 2025-11-27 15:50:04,930 | INFO     | . initial setup = 4 s
[2025-11-27 10:50:43] 2025-11-27 15:50:04,930 | INFO     | . payload setup = 40 s
[2025-11-27 10:50:43] 2025-11-27 15:50:04,930 | INFO     | . stage-in = 0 s
[2025-11-27 10:50:43] 2025-11-27 15:50:04,930 | INFO     | . payload execution = 75971 s
[2025-11-27 10:50:43] 2025-11-27 15:50:04,930 | INFO     | . stage-out = 11 s
[2025-11-27 10:50:43] 2025-11-27 15:50:04,930 | INFO     | . log creation = 2 s
[2025-11-27 10:50:43] 2025-11-27 15:50:04,930 | INFO     | ..............................
[2025-11-27 10:50:43] 2025-11-27 15:50:05,343 | INFO     | 
[2025-11-27 10:50:43] 2025-11-27 15:50:05,343 | INFO     | job summary report
[2025-11-27 10:50:43] 2025-11-27 15:50:05,344 | INFO     | --------------------------------------------------
[2025-11-27 10:50:43] 2025-11-27 15:50:05,344 | INFO     | PanDA job id: 6896577597
[2025-11-27 10:50:43] 2025-11-27 15:50:05,344 | INFO     | task id: 47556173
[2025-11-27 10:50:43] 2025-11-27 15:50:05,344 | INFO     | errors: (none)
[2025-11-27 10:50:43] 2025-11-27 15:50:05,344 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 10:50:43] 2025-11-27 15:50:05,344 | INFO     | pilot state: finished 
[2025-11-27 10:50:43] 2025-11-27 15:50:05,344 | INFO     | transexitcode: 0
[2025-11-27 10:50:43] 2025-11-27 15:50:05,344 | INFO     | exeerrorcode: 0
[2025-11-27 10:50:43] 2025-11-27 15:50:05,344 | INFO     | exeerrordiag: 
[2025-11-27 10:50:43] 2025-11-27 15:50:05,344 | INFO     | exitcode: 0
[2025-11-27 10:50:43] 2025-11-27 15:50:05,344 | INFO     | exitmsg: OK
[2025-11-27 10:50:43] 2025-11-27 15:50:05,344 | INFO     | cpuconsumptiontime: 257050 s
[2025-11-27 10:50:43] 2025-11-27 15:50:05,345 | INFO     | nevents: 1000
[2025-11-27 10:50:43] 2025-11-27 15:50:05,345 | INFO     | neventsw: 0
[2025-11-27 10:50:43] 2025-11-27 15:50:05,345 | INFO     | pid: 361320
[2025-11-27 10:50:43] 2025-11-27 15:50:05,345 | INFO     | pgrp: 361320
[2025-11-27 10:50:43] 2025-11-27 15:50:05,345 | INFO     | corecount: 8
[2025-11-27 10:50:43] 2025-11-27 15:50:05,345 | INFO     | event service: False
[2025-11-27 10:50:43] 2025-11-27 15:50:05,345 | INFO     | sizes: {0: 2284135, 1: 2284135, 2: 2284362, 13: 2284362, 24: 2284418, 31: 2284708, 35: 2284864, 76014: 2344047, 76026: 2353041, 76028: 2353097, 76064: 2353343}
[2025-11-27 10:50:43] 2025-11-27 15:50:05,345 | INFO     | --------------------------------------------------
[2025-11-27 10:50:43] 2025-11-27 15:50:05,345 | INFO     | 
[2025-11-27 10:50:43] 2025-11-27 15:50:05,345 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2025-11-27 10:50:43] 2025-11-27 15:50:05,410 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 10:50:43] 2025-11-27 15:50:05,411 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 10:50:43] 2025-11-27 15:50:05,411 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 10:50:43] 2025-11-27 15:50:05,411 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 10:50:43] 2025-11-27 15:50:05,412 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 10:50:43] 2025-11-27 15:50:05,412 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 10:50:43] 2025-11-27 15:50:05,412 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 10:50:43] 2025-11-27 15:50:05,412 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 10:50:43] 2025-11-27 15:50:05,413 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 10:50:43] 2025-11-27 15:50:05,413 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 10:50:43] 2025-11-27 15:50:05,413 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 10:50:43] 2025-11-27 15:50:05,414 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 10:50:43] 2025-11-27 15:50:05,414 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 10:50:43] 2025-11-27 15:50:05,414 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 10:50:43] 2025-11-27 15:50:05,414 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 10:50:43] 2025-11-27 15:50:05,415 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 10:50:43] 2025-11-27 15:50:05,415 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 10:50:43] 2025-11-27 15:50:05,415 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 10:50:43] 2025-11-27 15:50:05,416 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 10:50:43] 2025-11-27 15:50:05,416 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 10:50:43] 2025-11-27 15:50:05,417 | INFO     | job 6896577597 has completed (purged errors)
[2025-11-27 10:50:43] 2025-11-27 15:50:05,417 | INFO     | overall cleanup function is called
[2025-11-27 10:50:43] 2025-11-27 15:50:06,456 | INFO     | --- collectZombieJob: --- 10, [361320]
[2025-11-27 10:50:43] 2025-11-27 15:50:06,456 | INFO     | zombie collector waiting for pid 361320
[2025-11-27 10:50:43] 2025-11-27 15:50:06,457 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 10:50:43] 2025-11-27 15:50:06,457 | INFO     | collected zombie processes
[2025-11-27 10:50:43] 2025-11-27 15:50:06,457 | INFO     | will attempt to kill all subprocesses of pid=361320
[2025-11-27 10:50:43] 2025-11-27 15:50:09,221 | INFO     | process IDs to be killed: [361320] (in reverse order)
[2025-11-27 10:50:43] 2025-11-27 15:50:09,770 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 10:50:43] 2025-11-27 15:50:09,771 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 10:50:43] 2025-11-27 15:50:09,879 | INFO     | did not find any defunct processes belonging to 361320
[2025-11-27 10:50:43] 2025-11-27 15:50:09,929 | INFO     | did not find any defunct processes belonging to 361320
[2025-11-27 10:50:43] 2025-11-27 15:50:09,932 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 10:50:43] 2025-11-27 15:50:09,932 | INFO     | ready for new job
[2025-11-27 10:50:43] 2025-11-27 15:50:09,933 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 10:50:43] 2025-11-27 15:50:09,945 | INFO     | ***************************************
[2025-11-27 10:50:43] 2025-11-27 15:50:09,945 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 10:50:43] 2025-11-27 15:50:09,945 | INFO     | ***************************************
[2025-11-27 10:50:43] 2025-11-27 15:50:09,946 | INFO     | 
[2025-11-27 10:50:43] 2025-11-27 15:50:09,960 | INFO     | architecture information:
[2025-11-27 10:50:43] 2025-11-27 15:50:09,961 | INFO     | executing command: cat /etc/os-release
[2025-11-27 10:50:43] 2025-11-27 15:50:10,289 | INFO     | cat /etc/os-release:
[2025-11-27 10:50:43] NAME="CentOS Linux"
[2025-11-27 10:50:43] VERSION="7 (Core)"
[2025-11-27 10:50:43] ID="centos"
[2025-11-27 10:50:43] ID_LIKE="rhel fedora"
[2025-11-27 10:50:43] VERSION_ID="7"
[2025-11-27 10:50:43] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 10:50:43] ANSI_COLOR="0;31"
[2025-11-27 10:50:43] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 10:50:43] HOME_URL="https://www.centos.org/"
[2025-11-27 10:50:43] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 10:50:43] 
[2025-11-27 10:50:43] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 10:50:43] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 10:50:43] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 10:50:43] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 10:50:43] 
[2025-11-27 10:50:43] 2025-11-27 15:50:10,290 | INFO     | ***************************************
[2025-11-27 10:50:43] 2025-11-27 15:50:10,793 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2025-11-27 10:50:43] 2025-11-27 15:50:10,847 | INFO     | sufficient remaining disk space (85756739584 B)
[2025-11-27 10:50:43] 2025-11-27 15:50:10,848 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 10:50:43] 2025-11-27 15:50:10,848 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 10:50:43] 2025-11-27 15:50:10,848 | INFO     | update_server=False
[2025-11-27 10:50:43] 2025-11-27 15:50:10,848 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 10:50:43] 2025-11-27 15:50:10,849 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 10:50:43] 2025-11-27 15:50:10,850 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 10:50:43] 2025-11-27 15:50:10,870 | INFO     | all payload control threads have been joined
[2025-11-27 10:50:43] 2025-11-27 15:50:10,875 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 10:50:43] 2025-11-27 15:50:10,876 | INFO     | aborting loop
[2025-11-27 10:50:43] 2025-11-27 15:50:11,310 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 10:50:43] 2025-11-27 15:50:11,587 | INFO     | all data control threads have been joined
[2025-11-27 10:50:43] 2025-11-27 15:50:11,840 | INFO     | all job control threads have been joined
[2025-11-27 10:50:43] 2025-11-27 15:50:11,855 | INFO     | [job] retrieve thread has finished
[2025-11-27 10:50:43] 2025-11-27 15:50:11,857 | INFO     | [job] queue monitor thread has finished
[2025-11-27 10:50:43] 2025-11-27 15:50:11,876 | INFO     | [payload] control thread has finished
[2025-11-27 10:50:43] 2025-11-27 15:50:11,881 | INFO     | [job] job monitor thread has finished
[2025-11-27 10:50:43] 2025-11-27 15:50:12,110 | INFO     | [payload] failed_post thread has finished
[2025-11-27 10:50:43] 2025-11-27 15:50:12,266 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 10:50:43] 2025-11-27 15:50:12,322 | INFO     | [payload] validate_post thread has finished
[2025-11-27 10:50:43] 2025-11-27 15:50:12,595 | INFO     | [data] control thread has finished
[2025-11-27 10:50:43] 2025-11-27 15:50:12,735 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 10:50:43] 2025-11-27 15:50:12,736 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 10:50:43] 2025-11-27 15:50:12,736 | INFO     | [job] validate thread has finished
[2025-11-27 10:50:43] 2025-11-27 15:50:12,736 | INFO     | [data] copytool_in thread has finished
[2025-11-27 10:50:43] 2025-11-27 15:50:12,845 | INFO     | [job] control thread has finished
[2025-11-27 10:50:43] 2025-11-27 15:50:12,857 | INFO     | [data] copytool_out thread has finished
[2025-11-27 10:50:43] 2025-11-27 15:50:12,893 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 10:50:43] 2025-11-27 15:50:15,336 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 10:50:43] 2025-11-27 15:50:35,559 | INFO     | [monitor] cgroup control has ended
[2025-11-27 10:50:43] 2025-11-27 15:50:36,401 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140039044351808)>', '<ExcThread(monitor, started 140038415316736)>']
[2025-11-27 10:50:43] 2025-11-27 15:50:38,782 | INFO     | PID=353166 has CPU usage=3.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-27 10:50:43] 2025-11-27 15:50:38,782 | INFO     | .. there are 62 such processes running
[2025-11-27 10:50:43] 2025-11-27 15:50:38,782 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 10:50:43] 2025-11-27 15:50:38,782 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 10:50:43] 2025-11-27 15:50:38,782 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 10:50:43] 2025-11-27 15:50:38,782 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 10:50:43] 2025-11-27 15:50:38,782 | INFO     | [monitor] control thread has ended
[2025-11-27 10:50:43] 2025-11-27 15:50:41,426 | INFO     | all workflow threads have been joined
[2025-11-27 10:50:43] 2025-11-27 15:50:41,427 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 10:50:43] 2025-11-27 15:50:41,427 | INFO     | traces error code: 0
[2025-11-27 10:50:43] 2025-11-27 15:50:41,427 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 10:50:43] 2025-11-27 15:50:41,645 [wrapper] ==== pilot stdout END ====
[2025-11-27 10:50:43] 2025-11-27 15:50:41,658 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 10:50:43] 2025-11-27 15:50:41,744 [wrapper] pilotpid: 353166
[2025-11-27 10:50:43] 2025-11-27 15:50:41,761 [wrapper] Pilot exit status: 0
[2025-11-27 10:50:43] 2025-11-27 15:50:41,860 [wrapper] pandaids: 6896577597
[2025-11-27 10:50:43] 2025-11-27 15:50:42,697 [wrapper] cleanup supervisor_pilot 1962392 353167
[2025-11-27 10:50:43] 2025-11-27 15:50:42,724 [wrapper] Test setup, not cleaning
[2025-11-27 10:50:43] 2025-11-27 15:50:42,749 [wrapper] apfmon messages muted
[2025-11-27 10:50:43] 2025-11-27 15:50:42,769 [wrapper] ==== wrapper stdout END ====
[2025-11-27 10:50:43] 2025-11-27 15:50:42,807 [wrapper] ==== wrapper stderr END ====
[2025-11-27 10:50:43]  *** Error codes and diagnostics ***
[2025-11-27 10:50:43]     "exeErrorCode": 0,
[2025-11-27 10:50:43]     "exeErrorDiag": "",
[2025-11-27 10:50:43]     "pilotErrorCode": 0,
[2025-11-27 10:50:43]     "pilotErrorDiag": "",
[2025-11-27 10:50:43]  *** Listing of results directory ***
[2025-11-27 10:50:43] total 1326732
[2025-11-27 10:50:43] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 00:12 pilot3.tar.gz
[2025-11-27 10:50:43] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 00:18 queuedata.json
[2025-11-27 10:50:43] -rwx------. 1 boincer umatlas     36292 Nov 25 00:18 runpilot2-wrapper.sh
[2025-11-27 10:50:43] -rw-r--r--. 1 boincer umatlas       100 Nov 26 13:40 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 10:50:43] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 13:40 run_atlas
[2025-11-27 10:50:43] -rw-r--r--. 1 boincer umatlas       105 Nov 26 13:40 job.xml
[2025-11-27 10:50:43] -rw-r--r--. 2 boincer umatlas 408770592 Nov 26 13:40 EVNT.47483658._003066.pool.root.1
[2025-11-27 10:50:43] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 13:40 start_atlas.sh
[2025-11-27 10:50:43] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 13:40 shared
[2025-11-27 10:50:43] -rw-r--r--. 2 boincer umatlas    590099 Nov 26 13:40 input.tar.gz
[2025-11-27 10:50:43] -rw-r--r--. 1 boincer umatlas         0 Nov 26 13:40 boinc_lockfile
[2025-11-27 10:50:43] -rw-r--r--. 1 boincer umatlas      2781 Nov 26 13:40 pandaJob.out
[2025-11-27 10:50:43] -rw-------. 1 boincer umatlas        57 Nov 26 13:40 setup.sh.local
[2025-11-27 10:50:43] -rw-------. 1 boincer umatlas    991522 Nov 26 13:41 agis_schedconf.cvmfs.json
[2025-11-27 10:50:43] drwx------. 5 boincer umatlas      4096 Nov 26 13:41 pilot3
[2025-11-27 10:50:43] -rw-r--r--. 1 boincer umatlas       533 Nov 27 10:16 boinc_task_state.xml
[2025-11-27 10:50:43] -rw-r--r--. 1 boincer umatlas      6882 Nov 27 10:46 init_data.xml
[2025-11-27 10:50:43] -rw-------. 1 boincer umatlas 923188821 Nov 27 10:47 HITS.47556173._000481.pool.root.1
[2025-11-27 10:50:43] -rw-------. 1 boincer umatlas      1058 Nov 27 10:49 memory_monitor_summary.json
[2025-11-27 10:50:43] -rw-------. 1 boincer umatlas   1516240 Nov 27 10:49 agis_ddmendpoints.agis.ALL.json
[2025-11-27 10:50:43] -rw-------. 1 boincer umatlas   2279111 Nov 27 10:49 log.47556173._000481.job.log.tgz.1
[2025-11-27 10:50:43] -rw-------. 1 boincer umatlas        95 Nov 27 10:49 pilot_heartbeat.json
[2025-11-27 10:50:43] -rw-------. 1 boincer umatlas      8622 Nov 27 10:50 heartbeat.json
[2025-11-27 10:50:43] -rw-r--r--. 1 boincer umatlas        29 Nov 27 10:50 wrapper_checkpoint.txt
[2025-11-27 10:50:43] -rw-------. 1 boincer umatlas      4823 Nov 27 10:50 pilotlog.txt
[2025-11-27 10:50:43] -rw-------. 1 boincer umatlas   9065113 Nov 27 10:50 log.47556173._000481.job.log.1
[2025-11-27 10:50:43] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 10:50 boinc_mmap_file
[2025-11-27 10:50:43] -rw-------. 1 boincer umatlas       353 Nov 27 10:50 output.list
[2025-11-27 10:50:43] -rw-r--r--. 1 boincer umatlas       620 Nov 27 10:50 runtime_log
[2025-11-27 10:50:43] -rw-------. 1 boincer umatlas  11366400 Nov 27 10:50 result.tar.gz
[2025-11-27 10:50:43] -rw-------. 1 boincer umatlas       662 Nov 27 10:50 uEOLDmhc0h8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmm9LKDmZUadHn.diag
[2025-11-27 10:50:43] -rw-r--r--. 1 boincer umatlas      9353 Nov 27 10:50 runtime_log.err
[2025-11-27 10:50:43] -rw-r--r--. 1 boincer umatlas     21822 Nov 27 10:50 stderr.txt
[2025-11-27 10:50:43] HITS file was successfully produced:
[2025-11-27 10:50:43] -rw-------. 1 boincer umatlas 923188821 Nov 27 10:47 shared/HITS.pool.root.1
[2025-11-27 10:50:43]  *** Contents of shared directory: ***
[2025-11-27 10:50:43] total 1312448
[2025-11-27 10:50:43] -rw-r--r--. 2 boincer umatlas 408770592 Nov 26 13:40 ATLAS.root_0
[2025-11-27 10:50:43] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 13:40 start_atlas.sh
[2025-11-27 10:50:43] -rw-r--r--. 2 boincer umatlas    590099 Nov 26 13:40 input.tar.gz
[2025-11-27 10:50:43] -rw-------. 1 boincer umatlas 923188821 Nov 27 10:47 HITS.pool.root.1
[2025-11-27 10:50:43] -rw-------. 1 boincer umatlas  11366400 Nov 27 10:50 result.tar.gz
10:51:04 (345421): run_atlas exited; CPU time 260516.616819
10:51:04 (345421): called boinc_finish(0)

</stderr_txt>
]]>

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