Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
22:00:55 (1674329): wrapper (7.7.26015): starting
22:00:55 (1674329): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 22:00:55] Arguments: --nthreads 8
[2025-11-26 22:00:55] Threads: 8
[2025-11-26 22:00:55] Checking for CVMFS
[2025-11-26 22:00:55] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 22:00:56] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 22:00:56] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 22:00:56] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 22:00:56] 2.13.3.0 9230 30788 329668 153343 1 256 25334043 32503808 28499 16776704 0 218401561 99.821 97023779 33812 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 22:00:56] CVMFS is ok
[2025-11-26 22:00:56] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 22:00:56] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 22:00:56] Further information can be found at the LHC@home message board.
[2025-11-26 22:00:56] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 22:00:56] Checking for apptainer binary...
[2025-11-26 22:00:56] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 22:00:56] Running /usr/bin/apptainer --version
[2025-11-26 22:00:57] apptainer version 1.4.4-1.el9
[2025-11-26 22:00:57] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 22:00:57] c-4-35.aglt2.org
[2025-11-26 22:00:57] apptainer works
[2025-11-26 22:00:57] Set ATHENA_PROC_NUMBER=8
[2025-11-26 22:00:57] Set ATHENA_CORE_NUMBER=8
[2025-11-26 22:00:57] Starting ATLAS job with PandaID=6891570637
[2025-11-26 22:00:57] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 19:11:06]  *** The last 200 lines of the pilot log: ***
[2025-11-27 19:11:06] 2025-11-28 00:10:31,937 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 19:11:06] 2025-11-28 00:10:31,937 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 19:11:06] 2025-11-28 00:10:31,960 | INFO     | fitting pss+swap vs Time
[2025-11-27 19:11:06] 2025-11-28 00:10:31,962 | INFO     | sum of square deviations: 601267221124.3414
[2025-11-27 19:11:06] 2025-11-28 00:10:31,999 | INFO     | sum of deviations: 3352207126270.0947
[2025-11-27 19:11:06] 2025-11-28 00:10:31,999 | INFO     | mean x: 1764250569.6535685
[2025-11-27 19:11:06] 2025-11-28 00:10:31,999 | INFO     | mean y: 2923410.372894948
[2025-11-27 19:11:06] 2025-11-28 00:10:31,999 | INFO     | intersect: -9833191256.0139
[2025-11-27 19:11:06] 2025-11-28 00:10:32,001 | INFO     | chi2: 8.261813446375202
[2025-11-27 19:11:06] 2025-11-28 00:10:32,003 | INFO     | sum of square deviations: 594064077743.1152
[2025-11-27 19:11:06] 2025-11-28 00:10:32,038 | INFO     | sum of deviations: 3755636625038.462
[2025-11-27 19:11:06] 2025-11-28 00:10:32,038 | INFO     | mean x: 1764250417.1602254
[2025-11-27 19:11:06] 2025-11-28 00:10:32,038 | INFO     | mean y: 2931951.9122383255
[2025-11-27 19:11:06] 2025-11-28 00:10:32,039 | INFO     | intersect: -11150550863.60903
[2025-11-27 19:11:06] 2025-11-28 00:10:32,040 | INFO     | chi2: 5.40096638900211
[2025-11-27 19:11:06] 2025-11-28 00:10:32,040 | INFO     | current chi2=5.40096638900211 (change=34.627349987287154 %)
[2025-11-27 19:11:06] 2025-11-28 00:10:32,042 | INFO     | sum of square deviations: 586918702886.7773
[2025-11-27 19:11:06] 2025-11-28 00:10:32,076 | INFO     | sum of deviations: 4038729150254.9053
[2025-11-27 19:11:06] 2025-11-28 00:10:32,077 | INFO     | mean x: 1764250264.6669362
[2025-11-27 19:11:06] 2025-11-28 00:10:32,077 | INFO     | mean y: 2937989.266774454
[2025-11-27 19:11:06] 2025-11-28 00:10:32,077 | INFO     | intersect: -12137293591.715635
[2025-11-27 19:11:06] 2025-11-28 00:10:32,079 | INFO     | chi2: 3.674679983721246
[2025-11-27 19:11:06] 2025-11-28 00:10:32,079 | INFO     | current chi2=3.674679983721246 (change=31.96254671749244 %)
[2025-11-27 19:11:06] 2025-11-28 00:10:32,080 | INFO     | sum of square deviations: 579830637994.8628
[2025-11-27 19:11:06] 2025-11-28 00:10:32,114 | INFO     | sum of deviations: 4097558760936.4565
[2025-11-27 19:11:06] 2025-11-28 00:10:32,114 | INFO     | mean x: 1764250112.1712663
[2025-11-27 19:11:06] 2025-11-28 00:10:32,115 | INFO     | mean y: 2939252.4196428573
[2025-11-27 19:11:06] 2025-11-28 00:10:32,115 | INFO     | intersect: -12464698761.00066
[2025-11-27 19:11:06] 2025-11-28 00:10:32,116 | INFO     | chi2: 3.4610936116952917
[2025-11-27 19:11:06] 2025-11-28 00:10:32,117 | INFO     | current chi2=3.4610936116952917 (change=5.81238020649791 %)
[2025-11-27 19:11:06] 2025-11-28 00:10:32,117 | INFO     | right removable region: 1231
[2025-11-27 19:11:06] 2025-11-28 00:10:32,118 | INFO     | sum of square deviations: 594062819923.1158
[2025-11-27 19:11:06] 2025-11-28 00:10:32,153 | INFO     | sum of deviations: 2926371538733.2007
[2025-11-27 19:11:06] 2025-11-28 00:10:32,153 | INFO     | mean x: 1764250722.1602254
[2025-11-27 19:11:06] 2025-11-28 00:10:32,153 | INFO     | mean y: 2932420.566827697
[2025-11-27 19:11:06] 2025-11-28 00:10:32,153 | INFO     | intersect: -8687820354.009033
[2025-11-27 19:11:06] 2025-11-28 00:10:32,155 | INFO     | chi2: 5.329335590220668
[2025-11-27 19:11:06] 2025-11-28 00:10:32,155 | INFO     | current chi2=5.329335590220668 (change=35.49436059272353 %)
[2025-11-27 19:11:06] 2025-11-28 00:10:32,157 | INFO     | sum of square deviations: 586916565944.4272
[2025-11-27 19:11:06] 2025-11-28 00:10:32,191 | INFO     | sum of deviations: 2792166311456.5503
[2025-11-27 19:11:06] 2025-11-28 00:10:32,191 | INFO     | mean x: 1764250874.662894
[2025-11-27 19:11:06] 2025-11-28 00:10:32,191 | INFO     | mean y: 2935282.689571544
[2025-11-27 19:11:06] 2025-11-28 00:10:32,191 | INFO     | intersect: -8390219968.03122
[2025-11-27 19:11:06] 2025-11-28 00:10:32,193 | INFO     | chi2: 5.090217830545515
[2025-11-27 19:11:06] 2025-11-28 00:10:32,193 | INFO     | current chi2=5.090217830545515 (change=4.486821211145614 %)
[2025-11-27 19:11:06] 2025-11-28 00:10:32,193 | INFO     | left removable region: 20
[2025-11-27 19:11:06] 2025-11-28 00:10:32,195 | INFO     | sum of square deviations: 550680778596.387
[2025-11-27 19:11:06] 2025-11-28 00:10:32,249 | INFO     | sum of deviations: 3360598997282.637
[2025-11-27 19:11:06] 2025-11-28 00:10:32,251 | INFO     | mean x: 1764250691.6870356
[2025-11-27 19:11:06] 2025-11-28 00:10:32,251 | INFO     | mean y: 2955052.352601156
[2025-11-27 19:11:06] 2025-11-28 00:10:32,251 | INFO     | intersect: -10763607602.241478
[2025-11-27 19:11:06] 2025-11-28 00:10:32,253 | INFO     | chi2: 0.1844611451841826
[2025-11-27 19:11:06] 2025-11-28 00:10:32,253 | INFO     | current memory leak: 6.10 B/s (using 1211 data points, chi2=0.18)
[2025-11-27 19:11:06] 2025-11-28 00:10:32,254 | INFO     | could have reported an average CPU frequency of 2600 MHz (45 samples)
[2025-11-27 19:11:06] 2025-11-28 00:10:32,254 | INFO     | ..............................
[2025-11-27 19:11:06] 2025-11-28 00:10:32,254 | INFO     | . Timing measurements:
[2025-11-27 19:11:06] 2025-11-28 00:10:32,254 | INFO     | . get job = 0 s
[2025-11-27 19:11:06] 2025-11-28 00:10:32,255 | INFO     | . initial setup = 4 s
[2025-11-27 19:11:06] 2025-11-28 00:10:32,255 | INFO     | . payload setup = 22 s
[2025-11-27 19:11:06] 2025-11-28 00:10:32,255 | INFO     | . stage-in = 0 s
[2025-11-27 19:11:06] 2025-11-28 00:10:32,255 | INFO     | . payload execution = 76062 s
[2025-11-27 19:11:06] 2025-11-28 00:10:32,255 | INFO     | . stage-out = 5 s
[2025-11-27 19:11:06] 2025-11-28 00:10:32,255 | INFO     | . log creation = 1 s
[2025-11-27 19:11:06] 2025-11-28 00:10:32,255 | INFO     | ..............................
[2025-11-27 19:11:06] 2025-11-28 00:10:32,352 | INFO     | 
[2025-11-27 19:11:06] 2025-11-28 00:10:32,352 | INFO     | job summary report
[2025-11-27 19:11:06] 2025-11-28 00:10:32,352 | INFO     | --------------------------------------------------
[2025-11-27 19:11:06] 2025-11-28 00:10:32,352 | INFO     | PanDA job id: 6891570637
[2025-11-27 19:11:06] 2025-11-28 00:10:32,352 | INFO     | task id: 47493068
[2025-11-27 19:11:06] 2025-11-28 00:10:32,352 | INFO     | errors: (none)
[2025-11-27 19:11:06] 2025-11-28 00:10:32,352 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 19:11:06] 2025-11-28 00:10:32,352 | INFO     | pilot state: finished 
[2025-11-27 19:11:06] 2025-11-28 00:10:32,353 | INFO     | transexitcode: 0
[2025-11-27 19:11:06] 2025-11-28 00:10:32,353 | INFO     | exeerrorcode: 0
[2025-11-27 19:11:06] 2025-11-28 00:10:32,353 | INFO     | exeerrordiag: 
[2025-11-27 19:11:06] 2025-11-28 00:10:32,353 | INFO     | exitcode: 0
[2025-11-27 19:11:06] 2025-11-28 00:10:32,353 | INFO     | exitmsg: OK
[2025-11-27 19:11:06] 2025-11-28 00:10:32,353 | INFO     | cpuconsumptiontime: 295816 s
[2025-11-27 19:11:06] 2025-11-28 00:10:32,353 | INFO     | nevents: 1000
[2025-11-27 19:11:06] 2025-11-28 00:10:32,353 | INFO     | neventsw: 0
[2025-11-27 19:11:06] 2025-11-28 00:10:32,353 | INFO     | pid: 1685092
[2025-11-27 19:11:06] 2025-11-28 00:10:32,353 | INFO     | pgrp: 1685092
[2025-11-27 19:11:06] 2025-11-28 00:10:32,354 | INFO     | corecount: 8
[2025-11-27 19:11:06] 2025-11-28 00:10:32,354 | INFO     | event service: False
[2025-11-27 19:11:06] 2025-11-28 00:10:32,354 | INFO     | sizes: {0: 2284304, 1: 2284304, 12: 2284332, 15: 2284622, 23: 2284650, 76088: 2344735, 76094: 2353729, 76096: 2353785, 76105: 2354031}
[2025-11-27 19:11:06] 2025-11-28 00:10:32,354 | INFO     | --------------------------------------------------
[2025-11-27 19:11:06] 2025-11-28 00:10:32,354 | INFO     | 
[2025-11-27 19:11:06] 2025-11-28 00:10:32,354 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-11-27 19:11:06] 2025-11-28 00:10:32,388 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 19:11:06] 2025-11-28 00:10:32,388 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 19:11:06] 2025-11-28 00:10:32,388 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 19:11:06] 2025-11-28 00:10:32,389 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 19:11:06] 2025-11-28 00:10:32,389 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 19:11:06] 2025-11-28 00:10:32,389 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 19:11:06] 2025-11-28 00:10:32,389 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 19:11:06] 2025-11-28 00:10:32,389 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 19:11:06] 2025-11-28 00:10:32,389 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 19:11:06] 2025-11-28 00:10:32,389 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 19:11:06] 2025-11-28 00:10:32,389 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 19:11:06] 2025-11-28 00:10:32,389 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 19:11:06] 2025-11-28 00:10:32,390 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 19:11:06] 2025-11-28 00:10:32,390 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 19:11:06] 2025-11-28 00:10:32,390 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 19:11:06] 2025-11-28 00:10:32,390 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 19:11:06] 2025-11-28 00:10:32,390 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 19:11:06] 2025-11-28 00:10:32,390 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 19:11:06] 2025-11-28 00:10:32,390 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 19:11:06] 2025-11-28 00:10:32,390 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 19:11:06] 2025-11-28 00:10:32,391 | INFO     | job 6891570637 has completed (purged errors)
[2025-11-27 19:11:06] 2025-11-28 00:10:32,391 | INFO     | overall cleanup function is called
[2025-11-27 19:11:06] 2025-11-28 00:10:33,410 | INFO     | --- collectZombieJob: --- 10, [1685092]
[2025-11-27 19:11:06] 2025-11-28 00:10:33,410 | INFO     | zombie collector waiting for pid 1685092
[2025-11-27 19:11:06] 2025-11-28 00:10:33,410 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 19:11:06] 2025-11-28 00:10:33,411 | INFO     | collected zombie processes
[2025-11-27 19:11:06] 2025-11-28 00:10:33,411 | INFO     | will attempt to kill all subprocesses of pid=1685092
[2025-11-27 19:11:06] 2025-11-28 00:10:33,985 | INFO     | process IDs to be killed: [1685092] (in reverse order)
[2025-11-27 19:11:06] 2025-11-28 00:10:34,120 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 19:11:06] 2025-11-28 00:10:34,120 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 19:11:06] 2025-11-28 00:10:34,136 | INFO     | did not find any defunct processes belonging to 1685092
[2025-11-27 19:11:06] 2025-11-28 00:10:34,152 | INFO     | did not find any defunct processes belonging to 1685092
[2025-11-27 19:11:06] 2025-11-28 00:10:34,153 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 19:11:06] 2025-11-28 00:10:34,153 | INFO     | ready for new job
[2025-11-27 19:11:06] 2025-11-28 00:10:34,154 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 19:11:06] 2025-11-28 00:10:34,159 | INFO     | ***************************************
[2025-11-27 19:11:06] 2025-11-28 00:10:34,159 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 19:11:06] 2025-11-28 00:10:34,159 | INFO     | ***************************************
[2025-11-27 19:11:06] 2025-11-28 00:10:34,159 | INFO     | 
[2025-11-27 19:11:06] 2025-11-28 00:10:34,161 | INFO     | architecture information:
[2025-11-27 19:11:06] 2025-11-28 00:10:34,162 | INFO     | executing command: cat /etc/os-release
[2025-11-27 19:11:06] 2025-11-28 00:10:34,186 | INFO     | cat /etc/os-release:
[2025-11-27 19:11:06] NAME="CentOS Linux"
[2025-11-27 19:11:06] VERSION="7 (Core)"
[2025-11-27 19:11:06] ID="centos"
[2025-11-27 19:11:06] ID_LIKE="rhel fedora"
[2025-11-27 19:11:06] VERSION_ID="7"
[2025-11-27 19:11:06] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 19:11:06] ANSI_COLOR="0;31"
[2025-11-27 19:11:06] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 19:11:06] HOME_URL="https://www.centos.org/"
[2025-11-27 19:11:06] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 19:11:06] 
[2025-11-27 19:11:06] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 19:11:06] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 19:11:06] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 19:11:06] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 19:11:06] 
[2025-11-27 19:11:06] 2025-11-28 00:10:34,186 | INFO     | ***************************************
[2025-11-27 19:11:06] 2025-11-28 00:10:34,689 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-11-27 19:11:06] 2025-11-28 00:10:34,709 | INFO     | sufficient remaining disk space (92995059712 B)
[2025-11-27 19:11:06] 2025-11-28 00:10:34,710 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 19:11:06] 2025-11-28 00:10:34,710 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 19:11:06] 2025-11-28 00:10:34,710 | INFO     | update_server=False
[2025-11-27 19:11:06] 2025-11-28 00:10:34,710 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 19:11:06] 2025-11-28 00:10:34,711 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 19:11:06] 2025-11-28 00:10:34,711 | INFO     | aborting loop
[2025-11-27 19:11:06] 2025-11-28 00:10:34,713 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 19:11:06] 2025-11-28 00:10:35,717 | INFO     | [job] retrieve thread has finished
[2025-11-27 19:11:06] 2025-11-28 00:10:35,721 | INFO     | [job] job monitor thread has finished
[2025-11-27 19:11:06] 2025-11-28 00:10:35,725 | INFO     | all data control threads have been joined
[2025-11-27 19:11:06] 2025-11-28 00:10:35,848 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 19:11:06] 2025-11-28 00:10:36,118 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 19:11:06] 2025-11-28 00:10:36,268 | INFO     | all payload control threads have been joined
[2025-11-27 19:11:06] 2025-11-28 00:10:36,440 | INFO     | all job control threads have been joined
[2025-11-27 19:11:06] 2025-11-28 00:10:36,526 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 19:11:06] 2025-11-28 00:10:36,720 | INFO     | [data] copytool_out thread has finished
[2025-11-27 19:11:06] 2025-11-28 00:10:36,731 | INFO     | [data] control thread has finished
[2025-11-27 19:11:06] 2025-11-28 00:10:36,833 | INFO     | [payload] failed_post thread has finished
[2025-11-27 19:11:06] 2025-11-28 00:10:36,966 | INFO     | [job] validate thread has finished
[2025-11-27 19:11:06] 2025-11-28 00:10:37,113 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 19:11:06] 2025-11-28 00:10:37,194 | INFO     | [data] copytool_in thread has finished
[2025-11-27 19:11:06] 2025-11-28 00:10:37,274 | INFO     | [payload] control thread has finished
[2025-11-27 19:11:06] 2025-11-28 00:10:37,287 | INFO     | [payload] validate_post thread has finished
[2025-11-27 19:11:06] 2025-11-28 00:10:37,370 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 19:11:06] 2025-11-28 00:10:37,446 | INFO     | [job] control thread has finished
[2025-11-27 19:11:06] 2025-11-28 00:10:37,892 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 19:11:06] 2025-11-28 00:10:38,378 | INFO     | [job] queue monitor thread has finished
[2025-11-27 19:11:06] 2025-11-28 00:10:41,904 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 19:11:06] 2025-11-28 00:10:46,536 | INFO     | [monitor] cgroup control has ended
[2025-11-27 19:11:06] 2025-11-28 00:10:46,919 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139803847698240)>', '<ExcThread(monitor, started 139803131639552)>']
[2025-11-27 19:11:06] 2025-11-28 00:10:51,945 | INFO     | all workflow threads have been joined
[2025-11-27 19:11:06] 2025-11-28 00:10:51,945 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 19:11:06] 2025-11-28 00:10:51,946 | INFO     | traces error code: 0
[2025-11-27 19:11:06] 2025-11-28 00:10:51,946 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 19:11:06] 2025-11-28 00:11:05,540 | INFO     | PID=1678028 has CPU usage=4.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 19:11:06] 2025-11-28 00:11:05,541 | INFO     | .. there are 42 such processes running
[2025-11-27 19:11:06] 2025-11-28 00:11:05,541 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 19:11:06] 2025-11-28 00:11:05,542 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 19:11:06] 2025-11-28 00:11:05,542 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 19:11:06] 2025-11-28 00:11:05,542 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 19:11:06] 2025-11-28 00:11:05,542 | INFO     | [monitor] control thread has ended
[2025-11-27 19:11:06] 2025-11-28 00:11:05,669 [wrapper] ==== pilot stdout END ====
[2025-11-27 19:11:06] 2025-11-28 00:11:05,672 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 19:11:06] 2025-11-28 00:11:05,674 [wrapper] pilotpid: 1678028
[2025-11-27 19:11:06] 2025-11-28 00:11:05,676 [wrapper] Pilot exit status: 0
[2025-11-27 19:11:06] 2025-11-28 00:11:05,692 [wrapper] pandaids: 6891570637
[2025-11-27 19:11:06] 2025-11-28 00:11:05,807 [wrapper] cleanup supervisor_pilot 1653811 1678029
[2025-11-27 19:11:06] 2025-11-28 00:11:05,855 [wrapper] Test setup, not cleaning
[2025-11-27 19:11:06] 2025-11-28 00:11:05,858 [wrapper] apfmon messages muted
[2025-11-27 19:11:06] 2025-11-28 00:11:05,868 [wrapper] ==== wrapper stdout END ====
[2025-11-27 19:11:06] 2025-11-28 00:11:05,882 [wrapper] ==== wrapper stderr END ====
[2025-11-27 19:11:06]  *** Error codes and diagnostics ***
[2025-11-27 19:11:06]     "exeErrorCode": 0,
[2025-11-27 19:11:06]     "exeErrorDiag": "",
[2025-11-27 19:11:06]     "pilotErrorCode": 0,
[2025-11-27 19:11:06]     "pilotErrorDiag": "",
[2025-11-27 19:11:06]  *** Listing of results directory ***
[2025-11-27 19:11:06] total 1319540
[2025-11-27 19:11:06] -rw-r--r--. 1 boincer umatlas    576529 Nov 18 10:15 pilot3.tar.gz
[2025-11-27 19:11:06] -rw-r--r--. 1 boincer umatlas      5112 Nov 18 10:39 queuedata.json
[2025-11-27 19:11:06] -rwx------. 1 boincer umatlas     36292 Nov 18 10:40 runpilot2-wrapper.sh
[2025-11-27 19:11:06] -rw-r--r--. 1 boincer umatlas       100 Nov 26 22:00 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 19:11:06] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 22:00 run_atlas
[2025-11-27 19:11:06] -rw-r--r--. 1 boincer umatlas       105 Nov 26 22:00 job.xml
[2025-11-27 19:11:06] -rw-r--r--. 2 boincer umatlas 406372745 Nov 26 22:00 EVNT.47493065._000243.pool.root.1
[2025-11-27 19:11:06] -rw-r--r--. 2 boincer umatlas     15120 Nov 26 22:00 start_atlas.sh
[2025-11-27 19:11:06] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 22:00 shared
[2025-11-27 19:11:06] -rw-r--r--. 2 boincer umatlas    590094 Nov 26 22:00 input.tar.gz
[2025-11-27 19:11:06] -rw-r--r--. 1 boincer umatlas         0 Nov 26 22:00 boinc_lockfile
[2025-11-27 19:11:06] -rw-r--r--. 1 boincer umatlas      2773 Nov 26 22:00 pandaJob.out
[2025-11-27 19:11:06] -rw-------. 1 boincer umatlas    991554 Nov 26 22:01 agis_schedconf.cvmfs.json
[2025-11-27 19:11:06] drwx------. 5 boincer umatlas      4096 Nov 26 22:01 pilot3
[2025-11-27 19:11:06] -rw-r--r--. 1 boincer umatlas       533 Nov 27 18:55 boinc_task_state.xml
[2025-11-27 19:11:06] -rw-r--r--. 1 boincer umatlas      6661 Nov 27 19:02 init_data.xml
[2025-11-27 19:11:06] -rw-------. 1 boincer umatlas 917059567 Nov 27 19:09 HITS.47493068._002429.pool.root.1
[2025-11-27 19:11:06] -rw-------. 1 boincer umatlas      1065 Nov 27 19:10 memory_monitor_summary.json
[2025-11-27 19:11:06] -rw-------. 1 boincer umatlas   1516240 Nov 27 19:10 agis_ddmendpoints.agis.ALL.json
[2025-11-27 19:11:06] -rw-------. 1 boincer umatlas   2320784 Nov 27 19:10 log.47493068._002429.job.log.tgz.1
[2025-11-27 19:11:06] -rw-------. 1 boincer umatlas      8630 Nov 27 19:10 heartbeat.json
[2025-11-27 19:11:06] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 19:11 boinc_mmap_file
[2025-11-27 19:11:06] -rw-r--r--. 1 boincer umatlas        29 Nov 27 19:11 wrapper_checkpoint.txt
[2025-11-27 19:11:06] -rw-------. 1 boincer umatlas        95 Nov 27 19:11 pilot_heartbeat.json
[2025-11-27 19:11:06] -rw-------. 1 boincer umatlas       823 Nov 27 19:11 pilotlog.txt
[2025-11-27 19:11:06] -rw-------. 1 boincer umatlas   9609269 Nov 27 19:11 log.47493068._002429.job.log.1
[2025-11-27 19:11:06] -rw-------. 1 boincer umatlas       353 Nov 27 19:11 output.list
[2025-11-27 19:11:06] -rw-r--r--. 1 boincer umatlas       620 Nov 27 19:11 runtime_log
[2025-11-27 19:11:06] -rw-------. 1 boincer umatlas  11950080 Nov 27 19:11 result.tar.gz
[2025-11-27 19:11:06] -rw-r--r--. 1 boincer umatlas      8694 Nov 27 19:11 runtime_log.err
[2025-11-27 19:11:06] -rw-------. 1 boincer umatlas       660 Nov 27 19:11 NleLDmkzcf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmpdFKDmUzacNn.diag
[2025-11-27 19:11:06] -rw-r--r--. 1 boincer umatlas     21132 Nov 27 19:11 stderr.txt
[2025-11-27 19:11:06] HITS file was successfully produced:
[2025-11-27 19:11:06] -rw-------. 1 boincer umatlas 917059567 Nov 27 19:09 shared/HITS.pool.root.1
[2025-11-27 19:11:06]  *** Contents of shared directory: ***
[2025-11-27 19:11:06] total 1304692
[2025-11-27 19:11:06] -rw-r--r--. 2 boincer umatlas 406372745 Nov 26 22:00 ATLAS.root_0
[2025-11-27 19:11:06] -rw-r--r--. 2 boincer umatlas     15120 Nov 26 22:00 start_atlas.sh
[2025-11-27 19:11:06] -rw-r--r--. 2 boincer umatlas    590094 Nov 26 22:00 input.tar.gz
[2025-11-27 19:11:06] -rw-------. 1 boincer umatlas 917059567 Nov 27 19:09 HITS.pool.root.1
[2025-11-27 19:11:06] -rw-------. 1 boincer umatlas  11950080 Nov 27 19:11 result.tar.gz
19:11:07 (1674329): run_atlas exited; CPU time 298735.097363
19:11:07 (1674329): called boinc_finish(0)

</stderr_txt>
]]>

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