Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
08:04:02 (3064132): wrapper (7.7.26015): starting
08:04:02 (3064132): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 08:04:02] Arguments: --nthreads 8
[2025-11-26 08:04:02] Threads: 8
[2025-11-26 08:04:02] Checking for CVMFS
[2025-11-26 08:04:03] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 08:04:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 08:04:03] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 08:04:03] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 08:04:03] 2.13.3.0 12977 30084 376364 153322 0 761 32543816 32935936 46443 16776704 0 159248777 99.565 175706005 32673 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 08:04:03] CVMFS is ok
[2025-11-26 08:04:03] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 08:04:03] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 08:04:03] Further information can be found at the LHC@home message board.
[2025-11-26 08:04:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 08:04:03] Checking for apptainer binary...
[2025-11-26 08:04:03] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 08:04:03] Running /usr/bin/apptainer --version
[2025-11-26 08:04:04] apptainer version 1.4.4-1.el9
[2025-11-26 08:04:04] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 08:04:04] c6-12-29-1.aglt2.org
[2025-11-26 08:04:04] apptainer works
[2025-11-26 08:04:04] Set ATHENA_PROC_NUMBER=8
[2025-11-26 08:04:04] Set ATHENA_CORE_NUMBER=8
[2025-11-26 08:04:04] Starting ATLAS job with PandaID=6891597069
[2025-11-26 08:04:04] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 08:17:28]  *** The last 200 lines of the pilot log: ***
[2025-11-27 08:17:28] 2025-11-27 13:16:08,553 | INFO     | time since job start (87082s) is within the limit (172800.0s)
[2025-11-27 08:17:28] 2025-11-27 13:16:09,498 | INFO     | monitor loop #4973: job 0:6891597069 is in state 'finished'
[2025-11-27 08:17:28] 2025-11-27 13:16:09,499 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 08:17:28] 2025-11-27 13:16:10,565 | INFO     | time since job start (87084s) is within the limit (172800.0s)
[2025-11-27 08:17:28] 2025-11-27 13:16:12,017 | INFO     | monitor loop #4974: job 0:6891597069 is in state 'finished'
[2025-11-27 08:17:28] 2025-11-27 13:16:12,019 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 08:17:28] 2025-11-27 13:16:12,581 | INFO     | time since job start (87086s) is within the limit (172800.0s)
[2025-11-27 08:17:28] 2025-11-27 13:16:14,524 | INFO     | monitor loop #4975: job 0:6891597069 is in state 'finished'
[2025-11-27 08:17:28] 2025-11-27 13:16:14,525 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 08:17:28] 2025-11-27 13:16:14,588 | INFO     | time since job start (87088s) is within the limit (172800.0s)
[2025-11-27 08:17:28] 2025-11-27 13:16:16,595 | INFO     | time since job start (87090s) is within the limit (172800.0s)
[2025-11-27 08:17:28] 2025-11-27 13:16:17,029 | INFO     | monitor loop #4976: job 0:6891597069 is in state 'finished'
[2025-11-27 08:17:28] 2025-11-27 13:16:17,033 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 08:17:28] 2025-11-27 13:16:19,566 | INFO     | monitor loop #4977: job 0:6891597069 is in state 'finished'
[2025-11-27 08:17:28] 2025-11-27 13:16:19,569 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 08:17:28] 2025-11-27 13:16:20,393 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 08:17:28] 2025-11-27 13:16:20,430 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2768.4089583333334
[2025-11-27 08:17:28] 2025-11-27 13:16:20,489 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6891597069/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 08:17:28] 2025-11-27 13:16:20,490 | INFO     | extracted standard info from prmon json
[2025-11-27 08:17:28] 2025-11-27 13:16:20,490 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 08:17:28] 2025-11-27 13:16:20,490 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 08:17:28] 2025-11-27 13:16:20,549 | INFO     | fitting pss+swap vs Time
[2025-11-27 08:17:28] 2025-11-27 13:16:20,551 | INFO     | sum of square deviations: 899128170004.3643
[2025-11-27 08:17:28] 2025-11-27 13:16:20,695 | INFO     | sum of deviations: 2097649320449.6313
[2025-11-27 08:17:28] 2025-11-27 13:16:20,696 | INFO     | mean x: 1764205830.3408134
[2025-11-27 08:17:28] 2025-11-27 13:16:20,696 | INFO     | mean y: 2843785.410238429
[2025-11-27 08:17:28] 2025-11-27 13:16:20,696 | INFO     | intersect: -4113015648.8790045
[2025-11-27 08:17:28] 2025-11-27 13:16:20,698 | INFO     | chi2: 27.781877935427033
[2025-11-27 08:17:28] 2025-11-27 13:16:20,700 | INFO     | sum of square deviations: 889703891569.862
[2025-11-27 08:17:28] 2025-11-27 13:16:20,760 | INFO     | sum of deviations: 2593022910214.597
[2025-11-27 08:17:28] 2025-11-27 13:16:20,761 | INFO     | mean x: 1764205677.8472908
[2025-11-27 08:17:28] 2025-11-27 13:16:20,761 | INFO     | mean y: 2851799.154820549
[2025-11-27 08:17:28] 2025-11-27 13:16:20,761 | INFO     | intersect: -5138887811.444023
[2025-11-27 08:17:28] 2025-11-27 13:16:20,762 | INFO     | chi2: 24.014882779959922
[2025-11-27 08:17:28] 2025-11-27 13:16:20,763 | INFO     | current chi2=24.014882779959922 (change=13.5591811475908 %)
[2025-11-27 08:17:28] 2025-11-27 13:16:20,763 | INFO     | right removable region: 1420
[2025-11-27 08:17:28] 2025-11-27 13:16:20,764 | INFO     | sum of square deviations: 889702290319.8619
[2025-11-27 08:17:28] 2025-11-27 13:16:20,822 | INFO     | sum of deviations: 1585484833275.3215
[2025-11-27 08:17:28] 2025-11-27 13:16:20,823 | INFO     | mean x: 1764205982.8472908
[2025-11-27 08:17:28] 2025-11-27 13:16:20,823 | INFO     | mean y: 2852069.8494018298
[2025-11-27 08:17:28] 2025-11-27 13:16:20,823 | INFO     | intersect: -3141033091.525593
[2025-11-27 08:17:28] 2025-11-27 13:16:20,825 | INFO     | chi2: 24.50747515387454
[2025-11-27 08:17:28] 2025-11-27 13:16:20,825 | INFO     | current chi2=24.50747515387454 (change=11.786110316815636 %)
[2025-11-27 08:17:28] 2025-11-27 13:16:20,825 | INFO     | left removable region: 10
[2025-11-27 08:17:28] 2025-11-27 13:16:20,827 | INFO     | sum of square deviations: 869200118035.846
[2025-11-27 08:17:28] 2025-11-27 13:16:20,915 | INFO     | sum of deviations: 1946481418879.682
[2025-11-27 08:17:28] 2025-11-27 13:16:20,915 | INFO     | mean x: 1764205952.357447
[2025-11-27 08:17:28] 2025-11-27 13:16:20,915 | INFO     | mean y: 2865238.5879432624
[2025-11-27 08:17:28] 2025-11-27 13:16:20,916 | INFO     | intersect: -3947886762.1142535
[2025-11-27 08:17:28] 2025-11-27 13:16:20,918 | INFO     | chi2: 19.47437472615286
[2025-11-27 08:17:28] 2025-11-27 13:16:20,918 | INFO     | current memory leak: 2.24 B/s (using 1410 data points, chi2=19.47)
[2025-11-27 08:17:28] 2025-11-27 13:16:20,919 | INFO     | could have reported an average CPU frequency of 2646 MHz (51 samples)
[2025-11-27 08:17:28] 2025-11-27 13:16:20,920 | INFO     | ..............................
[2025-11-27 08:17:28] 2025-11-27 13:16:20,920 | INFO     | . Timing measurements:
[2025-11-27 08:17:28] 2025-11-27 13:16:20,920 | INFO     | . get job = 0 s
[2025-11-27 08:17:28] 2025-11-27 13:16:20,920 | INFO     | . initial setup = 4 s
[2025-11-27 08:17:28] 2025-11-27 13:16:20,920 | INFO     | . payload setup = 23 s
[2025-11-27 08:17:28] 2025-11-27 13:16:20,920 | INFO     | . stage-in = 0 s
[2025-11-27 08:17:28] 2025-11-27 13:16:20,920 | INFO     | . payload execution = 86976 s
[2025-11-27 08:17:28] 2025-11-27 13:16:20,920 | INFO     | . stage-out = 10 s
[2025-11-27 08:17:28] 2025-11-27 13:16:20,920 | INFO     | . log creation = 4 s
[2025-11-27 08:17:28] 2025-11-27 13:16:20,920 | INFO     | ..............................
[2025-11-27 08:17:28] 2025-11-27 13:16:21,225 | INFO     | PID=3070837 has CPU usage=4.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 08:17:28] 2025-11-27 13:16:21,226 | INFO     | .. there are 68 such processes running
[2025-11-27 08:17:28] 2025-11-27 13:16:21,301 | INFO     | 
[2025-11-27 08:17:28] 2025-11-27 13:16:21,302 | INFO     | job summary report
[2025-11-27 08:17:28] 2025-11-27 13:16:21,302 | INFO     | --------------------------------------------------
[2025-11-27 08:17:28] 2025-11-27 13:16:21,302 | INFO     | PanDA job id: 6891597069
[2025-11-27 08:17:28] 2025-11-27 13:16:21,302 | INFO     | task id: 47493068
[2025-11-27 08:17:28] 2025-11-27 13:16:21,302 | INFO     | errors: (none)
[2025-11-27 08:17:28] 2025-11-27 13:16:21,302 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 08:17:28] 2025-11-27 13:16:21,302 | INFO     | pilot state: finished 
[2025-11-27 08:17:28] 2025-11-27 13:16:21,302 | INFO     | transexitcode: 0
[2025-11-27 08:17:28] 2025-11-27 13:16:21,302 | INFO     | exeerrorcode: 0
[2025-11-27 08:17:28] 2025-11-27 13:16:21,302 | INFO     | exeerrordiag: 
[2025-11-27 08:17:28] 2025-11-27 13:16:21,302 | INFO     | exitcode: 0
[2025-11-27 08:17:28] 2025-11-27 13:16:21,302 | INFO     | exitmsg: OK
[2025-11-27 08:17:28] 2025-11-27 13:16:21,302 | INFO     | cpuconsumptiontime: 277050 s
[2025-11-27 08:17:28] 2025-11-27 13:16:21,303 | INFO     | nevents: 1000
[2025-11-27 08:17:28] 2025-11-27 13:16:21,303 | INFO     | neventsw: 0
[2025-11-27 08:17:28] 2025-11-27 13:16:21,303 | INFO     | pid: 3078819
[2025-11-27 08:17:28] 2025-11-27 13:16:21,303 | INFO     | pgrp: 3078819
[2025-11-27 08:17:28] 2025-11-27 13:16:21,303 | INFO     | corecount: 8
[2025-11-27 08:17:28] 2025-11-27 13:16:21,303 | INFO     | event service: False
[2025-11-27 08:17:28] 2025-11-27 13:16:21,303 | INFO     | sizes: {0: 2283476, 1: 2284332, 2: 2284332, 13: 2284360, 19: 2284678, 24: 2284706, 87004: 2349212, 87005: 2349211, 87017: 2358261, 87018: 2358317, 87055: 2358563}
[2025-11-27 08:17:28] 2025-11-27 13:16:21,303 | INFO     | --------------------------------------------------
[2025-11-27 08:17:28] 2025-11-27 13:16:21,303 | INFO     | 
[2025-11-27 08:17:28] 2025-11-27 13:16:21,303 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-27 08:17:28] 2025-11-27 13:16:21,444 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 08:17:28] 2025-11-27 13:16:21,444 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 08:17:28] 2025-11-27 13:16:21,444 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 08:17:28] 2025-11-27 13:16:21,444 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 08:17:28] 2025-11-27 13:16:21,444 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 08:17:28] 2025-11-27 13:16:21,444 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 08:17:28] 2025-11-27 13:16:21,445 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 08:17:28] 2025-11-27 13:16:21,445 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 08:17:28] 2025-11-27 13:16:21,445 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 08:17:28] 2025-11-27 13:16:21,445 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 08:17:28] 2025-11-27 13:16:21,445 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 08:17:28] 2025-11-27 13:16:21,445 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 08:17:28] 2025-11-27 13:16:21,445 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 08:17:28] 2025-11-27 13:16:21,445 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 08:17:28] 2025-11-27 13:16:21,445 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 08:17:28] 2025-11-27 13:16:21,445 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 08:17:28] 2025-11-27 13:16:21,445 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 08:17:28] 2025-11-27 13:16:21,445 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 08:17:28] 2025-11-27 13:16:21,445 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 08:17:28] 2025-11-27 13:16:21,446 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 08:17:28] 2025-11-27 13:16:21,446 | INFO     | job 6891597069 has completed (purged errors)
[2025-11-27 08:17:28] 2025-11-27 13:16:21,446 | INFO     | overall cleanup function is called
[2025-11-27 08:17:28] 2025-11-27 13:16:22,475 | INFO     | --- collectZombieJob: --- 10, [3078819]
[2025-11-27 08:17:28] 2025-11-27 13:16:22,476 | INFO     | zombie collector waiting for pid 3078819
[2025-11-27 08:17:28] 2025-11-27 13:16:22,476 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 08:17:28] 2025-11-27 13:16:22,476 | INFO     | collected zombie processes
[2025-11-27 08:17:28] 2025-11-27 13:16:22,476 | INFO     | will attempt to kill all subprocesses of pid=3078819
[2025-11-27 08:17:28] 2025-11-27 13:16:24,370 | INFO     | process IDs to be killed: [3078819] (in reverse order)
[2025-11-27 08:17:28] 2025-11-27 13:16:25,415 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 08:17:28] 2025-11-27 13:16:25,415 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 08:17:28] 2025-11-27 13:16:25,470 | INFO     | did not find any defunct processes belonging to 3078819
[2025-11-27 08:17:28] 2025-11-27 13:16:25,550 | INFO     | did not find any defunct processes belonging to 3078819
[2025-11-27 08:17:28] 2025-11-27 13:16:25,559 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 08:17:28] 2025-11-27 13:16:25,559 | INFO     | ready for new job
[2025-11-27 08:17:28] 2025-11-27 13:16:25,559 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 08:17:28] 2025-11-27 13:16:25,589 | INFO     | ***************************************
[2025-11-27 08:17:28] 2025-11-27 13:16:25,590 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 08:17:28] 2025-11-27 13:16:25,590 | INFO     | ***************************************
[2025-11-27 08:17:28] 2025-11-27 13:16:25,590 | INFO     | 
[2025-11-27 08:17:28] 2025-11-27 13:16:25,616 | INFO     | architecture information:
[2025-11-27 08:17:28] 2025-11-27 13:16:25,621 | INFO     | executing command: cat /etc/os-release
[2025-11-27 08:17:28] 2025-11-27 13:16:25,761 | INFO     | cat /etc/os-release:
[2025-11-27 08:17:28] NAME="CentOS Linux"
[2025-11-27 08:17:28] VERSION="7 (Core)"
[2025-11-27 08:17:28] ID="centos"
[2025-11-27 08:17:28] ID_LIKE="rhel fedora"
[2025-11-27 08:17:28] VERSION_ID="7"
[2025-11-27 08:17:28] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 08:17:28] ANSI_COLOR="0;31"
[2025-11-27 08:17:28] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 08:17:28] HOME_URL="https://www.centos.org/"
[2025-11-27 08:17:28] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 08:17:28] 
[2025-11-27 08:17:28] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 08:17:28] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 08:17:28] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 08:17:28] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 08:17:28] 
[2025-11-27 08:17:28] 2025-11-27 13:16:25,761 | INFO     | ***************************************
[2025-11-27 08:17:28] 2025-11-27 13:16:26,264 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-27 08:17:28] 2025-11-27 13:16:26,443 | INFO     | sufficient remaining disk space (86858792960 B)
[2025-11-27 08:17:28] 2025-11-27 13:16:26,443 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 08:17:28] 2025-11-27 13:16:26,443 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 08:17:28] 2025-11-27 13:16:26,443 | INFO     | update_server=False
[2025-11-27 08:17:28] 2025-11-27 13:16:26,443 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 08:17:28] 2025-11-27 13:16:26,450 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 08:17:28] 2025-11-27 13:16:26,451 | INFO     | aborting loop
[2025-11-27 08:17:28] 2025-11-27 13:16:26,451 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 08:17:28] 2025-11-27 13:16:26,456 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 08:17:28] 2025-11-27 13:16:26,728 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 08:17:28] 2025-11-27 13:16:26,926 | INFO     | all data control threads have been joined
[2025-11-27 08:17:28] 2025-11-27 13:16:27,131 | INFO     | all payload control threads have been joined
[2025-11-27 08:17:28] 2025-11-27 13:16:27,449 | INFO     | [job] retrieve thread has finished
[2025-11-27 08:17:28] 2025-11-27 13:16:27,457 | INFO     | [job] job monitor thread has finished
[2025-11-27 08:17:28] 2025-11-27 13:16:27,462 | INFO     | [job] queue monitor thread has finished
[2025-11-27 08:17:28] 2025-11-27 13:16:27,679 | INFO     | [payload] validate_post thread has finished
[2025-11-27 08:17:28] 2025-11-27 13:16:27,820 | INFO     | all job control threads have been joined
[2025-11-27 08:17:28] 2025-11-27 13:16:27,843 | INFO     | [job] validate thread has finished
[2025-11-27 08:17:28] 2025-11-27 13:16:27,920 | INFO     | [data] copytool_in thread has finished
[2025-11-27 08:17:28] 2025-11-27 13:16:27,932 | INFO     | [data] control thread has finished
[2025-11-27 08:17:28] 2025-11-27 13:16:28,129 | INFO     | [payload] failed_post thread has finished
[2025-11-27 08:17:28] 2025-11-27 13:16:28,137 | INFO     | [payload] control thread has finished
[2025-11-27 08:17:28] 2025-11-27 13:16:28,191 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 08:17:28] 2025-11-27 13:16:28,462 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 08:17:28] 2025-11-27 13:16:28,463 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 08:17:28] 2025-11-27 13:16:28,739 | INFO     | [data] copytool_out thread has finished
[2025-11-27 08:17:28] 2025-11-27 13:16:28,825 | INFO     | [job] control thread has finished
[2025-11-27 08:17:28] 2025-11-27 13:16:28,878 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 08:17:28] 2025-11-27 13:16:30,461 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 08:17:28] 2025-11-27 13:16:55,014 | INFO     | PID=3070837 has CPU usage=5.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 08:17:28] 2025-11-27 13:16:55,014 | INFO     | .. there are 68 such processes running
[2025-11-27 08:17:28] 2025-11-27 13:16:55,014 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 08:17:28] 2025-11-27 13:16:55,014 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 08:17:28] 2025-11-27 13:16:55,014 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 08:17:28] 2025-11-27 13:17:19,603 | INFO     | [monitor] cgroup control has ended
[2025-11-27 08:17:28] 2025-11-27 13:17:21,352 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140253953476416)>', '<ExcThread(monitor, started 140253599872768)>']
[2025-11-27 08:17:28] 2025-11-27 13:17:22,200 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 08:17:28] 2025-11-27 13:17:22,201 | INFO     | [monitor] control thread has ended
[2025-11-27 08:17:28] 2025-11-27 13:17:26,379 | INFO     | all workflow threads have been joined
[2025-11-27 08:17:28] 2025-11-27 13:17:26,380 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 08:17:28] 2025-11-27 13:17:26,380 | INFO     | traces error code: 0
[2025-11-27 08:17:28] 2025-11-27 13:17:26,380 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 08:17:28] 2025-11-27 13:17:26,751 [wrapper] ==== pilot stdout END ====
[2025-11-27 08:17:28] 2025-11-27 13:17:26,777 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 08:17:28] 2025-11-27 13:17:26,796 [wrapper] pilotpid: 3070837
[2025-11-27 08:17:28] 2025-11-27 13:17:26,855 [wrapper] Pilot exit status: 0
[2025-11-27 08:17:28] 2025-11-27 13:17:26,954 [wrapper] pandaids: 6891597069
[2025-11-27 08:17:28] 2025-11-27 13:17:27,414 [wrapper] cleanup supervisor_pilot 1681989 3070838
[2025-11-27 08:17:28] 2025-11-27 13:17:27,433 [wrapper] Test setup, not cleaning
[2025-11-27 08:17:28] 2025-11-27 13:17:27,452 [wrapper] apfmon messages muted
[2025-11-27 08:17:28] 2025-11-27 13:17:27,511 [wrapper] ==== wrapper stdout END ====
[2025-11-27 08:17:28] 2025-11-27 13:17:27,515 [wrapper] ==== wrapper stderr END ====
[2025-11-27 08:17:28]  *** Error codes and diagnostics ***
[2025-11-27 08:17:28]     "exeErrorCode": 0,
[2025-11-27 08:17:28]     "exeErrorDiag": "",
[2025-11-27 08:17:28]     "pilotErrorCode": 0,
[2025-11-27 08:17:28]     "pilotErrorDiag": "",
[2025-11-27 08:17:28]  *** Listing of results directory ***
[2025-11-27 08:17:28] total 1334744
[2025-11-27 08:17:28] -rw-r--r--. 1 boincer umatlas    576529 Nov 18 13:50 pilot3.tar.gz
[2025-11-27 08:17:28] -rwx------. 1 boincer umatlas     36292 Nov 18 13:51 runpilot2-wrapper.sh
[2025-11-27 08:17:28] -rw-r--r--. 1 boincer umatlas      5112 Nov 18 13:51 queuedata.json
[2025-11-27 08:17:28] -rw-r--r--. 1 boincer umatlas       100 Nov 26 08:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 08:17:28] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 08:04 run_atlas
[2025-11-27 08:17:28] -rw-r--r--. 1 boincer umatlas       105 Nov 26 08:04 job.xml
[2025-11-27 08:17:28] -rw-r--r--. 2 boincer umatlas 409441780 Nov 26 08:04 EVNT.47493065._000790.pool.root.1
[2025-11-27 08:17:28] -rw-r--r--. 2 boincer umatlas     15120 Nov 26 08:04 start_atlas.sh
[2025-11-27 08:17:28] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 08:04 shared
[2025-11-27 08:17:28] -rw-r--r--. 2 boincer umatlas    590096 Nov 26 08:04 input.tar.gz
[2025-11-27 08:17:28] -rw-r--r--. 1 boincer umatlas         0 Nov 26 08:04 boinc_lockfile
[2025-11-27 08:17:28] -rw-r--r--. 1 boincer umatlas      2773 Nov 26 08:04 pandaJob.out
[2025-11-27 08:17:28] -rw-------. 1 boincer umatlas    991830 Nov 26 08:04 agis_schedconf.cvmfs.json
[2025-11-27 08:17:28] drwx------. 5 boincer umatlas      4096 Nov 26 08:04 pilot3
[2025-11-27 08:17:28] -rw-r--r--. 1 boincer umatlas       533 Nov 27 07:14 boinc_task_state.xml
[2025-11-27 08:17:28] -rw-------. 1 boincer umatlas 927199179 Nov 27 08:12 HITS.47493068._006548.pool.root.1
[2025-11-27 08:17:28] -rw-r--r--. 1 boincer umatlas      6882 Nov 27 08:13 init_data.xml
[2025-11-27 08:17:28] -rw-------. 1 boincer umatlas      1059 Nov 27 08:15 memory_monitor_summary.json
[2025-11-27 08:17:28] -rw-------. 1 boincer umatlas   1516240 Nov 27 08:15 agis_ddmendpoints.agis.ALL.json
[2025-11-27 08:17:28] -rw-------. 1 boincer umatlas   2448665 Nov 27 08:15 log.47493068._006548.job.log.tgz.1
[2025-11-27 08:17:28] -rw-------. 1 boincer umatlas        95 Nov 27 08:15 pilot_heartbeat.json
[2025-11-27 08:17:28] -rw-------. 1 boincer umatlas      8628 Nov 27 08:16 heartbeat.json
[2025-11-27 08:17:28] -rw-r--r--. 1 boincer umatlas        29 Nov 27 08:17 wrapper_checkpoint.txt
[2025-11-27 08:17:28] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 08:17 boinc_mmap_file
[2025-11-27 08:17:28] -rw-------. 1 boincer umatlas      4824 Nov 27 08:17 pilotlog.txt
[2025-11-27 08:17:28] -rw-------. 1 boincer umatlas  10662170 Nov 27 08:17 log.47493068._006548.job.log.1
[2025-11-27 08:17:28] -rw-------. 1 boincer umatlas       353 Nov 27 08:17 output.list
[2025-11-27 08:17:28] -rw-r--r--. 1 boincer umatlas       620 Nov 27 08:17 runtime_log
[2025-11-27 08:17:28] -rw-------. 1 boincer umatlas  13127680 Nov 27 08:17 result.tar.gz
[2025-11-27 08:17:28] -rw-r--r--. 1 boincer umatlas      8714 Nov 27 08:17 runtime_log.err
[2025-11-27 08:17:28] -rw-------. 1 boincer umatlas       662 Nov 27 08:17 lbLODmcyff8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmVjFKDmCM4gRn.diag
[2025-11-27 08:17:28] -rw-r--r--. 1 boincer umatlas     21897 Nov 27 08:17 stderr.txt
[2025-11-27 08:17:28] HITS file was successfully produced:
[2025-11-27 08:17:28] -rw-------. 1 boincer umatlas 927199179 Nov 27 08:12 shared/HITS.pool.root.1
[2025-11-27 08:17:28]  *** Contents of shared directory: ***
[2025-11-27 08:17:28] total 1318740
[2025-11-27 08:17:28] -rw-r--r--. 2 boincer umatlas 409441780 Nov 26 08:04 ATLAS.root_0
[2025-11-27 08:17:28] -rw-r--r--. 2 boincer umatlas     15120 Nov 26 08:04 start_atlas.sh
[2025-11-27 08:17:28] -rw-r--r--. 2 boincer umatlas    590096 Nov 26 08:04 input.tar.gz
[2025-11-27 08:17:28] -rw-------. 1 boincer umatlas 927199179 Nov 27 08:12 HITS.pool.root.1
[2025-11-27 08:17:28] -rw-------. 1 boincer umatlas  13127680 Nov 27 08:17 result.tar.gz
08:17:30 (3064132): run_atlas exited; CPU time 281270.892858
08:17:30 (3064132): called boinc_finish(0)

</stderr_txt>
]]>

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