Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
07:53:23 (2704341): wrapper (7.7.26015): starting
07:53:23 (2704341): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 07:53:23] Arguments: --nthreads 8
[2025-11-26 07:53:23] Threads: 8
[2025-11-26 07:53:23] Checking for CVMFS
[2025-11-26 07:53:23] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 07:53:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 07:53:23] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 07:53:24] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 07:53:24] 2.10.1.0 4440 251896 171692 153322 1 81 10190226 18432000 3769 130560 2 280041772 99.988 10191608 6500 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-11-26 07:53:24] CVMFS is ok
[2025-11-26 07:53:24] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 07:53:24] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 07:53:24] Further information can be found at the LHC@home message board.
[2025-11-26 07:53:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 07:53:24] Checking for apptainer binary...
[2025-11-26 07:53:24] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 07:53:24] Running /usr/bin/apptainer --version
[2025-11-26 07:53:24] apptainer version 1.1.9-1.el8
[2025-11-26 07:53:24] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 07:53:24] c-16-31.aglt2.org
[2025-11-26 07:53:24] apptainer works
[2025-11-26 07:53:24] Set ATHENA_PROC_NUMBER=8
[2025-11-26 07:53:24] Set ATHENA_CORE_NUMBER=8
[2025-11-26 07:53:24] Starting ATLAS job with PandaID=6896558439
[2025-11-26 07:53:24] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 00:29:23]  *** The last 200 lines of the pilot log: ***
[2025-11-27 00:29:23] 2025-11-27 05:28:29,978 | INFO     | preparing for final server update for job 6896558439 in state='finished'
[2025-11-27 00:29:23] 2025-11-27 05:28:29,978 | INFO     | this job has now completed (state=finished)
[2025-11-27 00:29:23] 2025-11-27 05:28:29,978 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-11-27 00:29:23] 2025-11-27 05:28:29,978 | INFO     | log transfer has been attempted: DONE
[2025-11-27 00:29:23] 2025-11-27 05:28:29,979 | INFO     | job 6896558439 has finished - writing final server update
[2025-11-27 00:29:23] 2025-11-27 05:28:29,979 | INFO     | total number of processed events: 1000 (read)
[2025-11-27 00:29:23] 2025-11-27 05:28:29,980 | INFO     | executing command: lscpu
[2025-11-27 00:29:23] 2025-11-27 05:28:30,040 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-27 00:29:23] 2025-11-27 05:28:30,374 | INFO     | time since job start (59694s) is within the limit (172800.0s)
[2025-11-27 00:29:23] 2025-11-27 05:28:31,646 | INFO     | monitor loop #4248: job 0:6896558439 is in state 'finished'
[2025-11-27 00:29:23] 2025-11-27 05:28:31,646 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 00:29:23] 2025-11-27 05:28:32,381 | INFO     | time since job start (59696s) is within the limit (172800.0s)
[2025-11-27 00:29:23] 2025-11-27 05:28:33,568 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-27 00:29:23] 2025-11-27 05:28:33,587 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2949.8573249999995
[2025-11-27 00:29:23] 2025-11-27 05:28:33,596 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6896558439/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 00:29:23] 2025-11-27 05:28:33,598 | INFO     | extracted standard info from prmon json
[2025-11-27 00:29:23] 2025-11-27 05:28:33,598 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 00:29:23] 2025-11-27 05:28:33,598 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 00:29:23] 2025-11-27 05:28:33,625 | INFO     | fitting pss+swap vs Time
[2025-11-27 00:29:23] 2025-11-27 05:28:33,627 | INFO     | sum of square deviations: 290064836564.6965
[2025-11-27 00:29:23] 2025-11-27 05:28:33,658 | INFO     | sum of deviations: 8778289556806.7
[2025-11-27 00:29:23] 2025-11-27 05:28:33,658 | INFO     | mean x: 1764191440.5429447
[2025-11-27 00:29:23] 2025-11-27 05:28:33,658 | INFO     | mean y: 3200257.13803681
[2025-11-27 00:29:23] 2025-11-27 05:28:33,659 | INFO     | intersect: -53386874465.93771
[2025-11-27 00:29:23] 2025-11-27 05:28:33,660 | INFO     | chi2: 19.49721402979289
[2025-11-27 00:29:23] 2025-11-27 05:28:33,662 | INFO     | sum of square deviations: 285638710572.1871
[2025-11-27 00:29:23] 2025-11-27 05:28:33,693 | INFO     | sum of deviations: 9057152277695.814
[2025-11-27 00:29:23] 2025-11-27 05:28:33,693 | INFO     | mean x: 1764191288.0431654
[2025-11-27 00:29:23] 2025-11-27 05:28:33,693 | INFO     | mean y: 3209857.2661870504
[2025-11-27 00:29:23] 2025-11-27 05:28:33,694 | INFO     | intersect: -55936508925.18905
[2025-11-27 00:29:23] 2025-11-27 05:28:33,695 | INFO     | chi2: 17.198073039354558
[2025-11-27 00:29:23] 2025-11-27 05:28:33,695 | INFO     | current chi2=17.198073039354558 (change=11.792151365446927 %)
[2025-11-27 00:29:23] 2025-11-27 05:28:33,695 | INFO     | right removable region: 972
[2025-11-27 00:29:23] 2025-11-27 05:28:33,697 | INFO     | sum of square deviations: 285638684952.18695
[2025-11-27 00:29:23] 2025-11-27 05:28:33,728 | INFO     | sum of deviations: 8471463863538.4795
[2025-11-27 00:29:23] 2025-11-27 05:28:33,728 | INFO     | mean x: 1764191593.0431654
[2025-11-27 00:29:23] 2025-11-27 05:28:33,728 | INFO     | mean y: 3210816.4409044194
[2025-11-27 00:29:23] 2025-11-27 05:28:33,729 | INFO     | intersect: -52319132466.03587
[2025-11-27 00:29:23] 2025-11-27 05:28:33,730 | INFO     | chi2: 17.377654932502395
[2025-11-27 00:29:23] 2025-11-27 05:28:33,730 | INFO     | current chi2=17.377654932502395 (change=10.871086987359751 %)
[2025-11-27 00:29:23] 2025-11-27 05:28:33,731 | INFO     | left removable region: 10
[2025-11-27 00:29:23] 2025-11-27 05:28:33,732 | INFO     | sum of square deviations: 276060158152.6661
[2025-11-27 00:29:23] 2025-11-27 05:28:33,762 | INFO     | sum of deviations: 8679206994838.495
[2025-11-27 00:29:23] 2025-11-27 05:28:33,763 | INFO     | mean x: 1764191562.543659
[2025-11-27 00:29:23] 2025-11-27 05:28:33,763 | INFO     | mean y: 3225220.023908524
[2025-11-27 00:29:23] 2025-11-27 05:28:33,763 | INFO     | intersect: -55462162658.9336
[2025-11-27 00:29:23] 2025-11-27 05:28:33,765 | INFO     | chi2: 14.835396407457607
[2025-11-27 00:29:23] 2025-11-27 05:28:33,765 | INFO     | current memory leak: 31.44 B/s (using 962 data points, chi2=14.84)
[2025-11-27 00:29:23] 2025-11-27 05:28:33,766 | INFO     | could have reported an average CPU frequency of 2906 MHz (36 samples)
[2025-11-27 00:29:23] 2025-11-27 05:28:33,767 | INFO     | ..............................
[2025-11-27 00:29:23] 2025-11-27 05:28:33,767 | INFO     | . Timing measurements:
[2025-11-27 00:29:23] 2025-11-27 05:28:33,767 | INFO     | . get job = 0 s
[2025-11-27 00:29:23] 2025-11-27 05:28:33,767 | INFO     | . initial setup = 2 s
[2025-11-27 00:29:23] 2025-11-27 05:28:33,768 | INFO     | . payload setup = 5 s
[2025-11-27 00:29:23] 2025-11-27 05:28:33,768 | INFO     | . stage-in = 0 s
[2025-11-27 00:29:23] 2025-11-27 05:28:33,768 | INFO     | . payload execution = 59660 s
[2025-11-27 00:29:23] 2025-11-27 05:28:33,768 | INFO     | . stage-out = 3 s
[2025-11-27 00:29:23] 2025-11-27 05:28:33,769 | INFO     | . log creation = 0 s
[2025-11-27 00:29:23] 2025-11-27 05:28:33,769 | INFO     | ..............................
[2025-11-27 00:29:23] 2025-11-27 05:28:34,096 | INFO     | PID=2711440 has CPU usage=16.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-27 00:29:23] 2025-11-27 05:28:34,096 | INFO     | .. there are 5 such processes running
[2025-11-27 00:29:23] 2025-11-27 05:28:34,329 | INFO     | 
[2025-11-27 00:29:23] 2025-11-27 05:28:34,329 | INFO     | job summary report
[2025-11-27 00:29:23] 2025-11-27 05:28:34,329 | INFO     | --------------------------------------------------
[2025-11-27 00:29:23] 2025-11-27 05:28:34,329 | INFO     | PanDA job id: 6896558439
[2025-11-27 00:29:23] 2025-11-27 05:28:34,330 | INFO     | task id: 47556161
[2025-11-27 00:29:23] 2025-11-27 05:28:34,330 | INFO     | errors: (none)
[2025-11-27 00:29:23] 2025-11-27 05:28:34,330 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 00:29:23] 2025-11-27 05:28:34,330 | INFO     | pilot state: finished 
[2025-11-27 00:29:23] 2025-11-27 05:28:34,330 | INFO     | transexitcode: 0
[2025-11-27 00:29:23] 2025-11-27 05:28:34,330 | INFO     | exeerrorcode: 0
[2025-11-27 00:29:23] 2025-11-27 05:28:34,331 | INFO     | exeerrordiag: 
[2025-11-27 00:29:23] 2025-11-27 05:28:34,331 | INFO     | exitcode: 0
[2025-11-27 00:29:23] 2025-11-27 05:28:34,331 | INFO     | exitmsg: OK
[2025-11-27 00:29:23] 2025-11-27 05:28:34,331 | INFO     | cpuconsumptiontime: 466114 s
[2025-11-27 00:29:23] 2025-11-27 05:28:34,331 | INFO     | nevents: 1000
[2025-11-27 00:29:23] 2025-11-27 05:28:34,331 | INFO     | neventsw: 0
[2025-11-27 00:29:23] 2025-11-27 05:28:34,331 | INFO     | pid: 2728325
[2025-11-27 00:29:23] 2025-11-27 05:28:34,332 | INFO     | pgrp: 2728325
[2025-11-27 00:29:23] 2025-11-27 05:28:34,332 | INFO     | corecount: 8
[2025-11-27 00:29:23] 2025-11-27 05:28:34,332 | INFO     | event service: False
[2025-11-27 00:29:23] 2025-11-27 05:28:34,332 | INFO     | sizes: {0: 2284091, 1: 2284290, 5: 2284552, 12: 2284608, 59669: 2336653, 59673: 2345647, 59676: 2345831, 59682: 2346077}
[2025-11-27 00:29:23] 2025-11-27 05:28:34,332 | INFO     | --------------------------------------------------
[2025-11-27 00:29:23] 2025-11-27 05:28:34,332 | INFO     | 
[2025-11-27 00:29:23] 2025-11-27 05:28:34,333 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-11-27 00:29:23] 2025-11-27 05:28:34,349 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 00:29:23] 2025-11-27 05:28:34,350 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 00:29:23] 2025-11-27 05:28:34,350 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 00:29:23] 2025-11-27 05:28:34,350 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 00:29:23] 2025-11-27 05:28:34,350 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 00:29:23] 2025-11-27 05:28:34,350 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 00:29:23] 2025-11-27 05:28:34,351 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 00:29:23] 2025-11-27 05:28:34,351 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 00:29:23] 2025-11-27 05:28:34,351 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 00:29:23] 2025-11-27 05:28:34,351 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 00:29:23] 2025-11-27 05:28:34,351 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 00:29:23] 2025-11-27 05:28:34,351 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 00:29:23] 2025-11-27 05:28:34,352 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 00:29:23] 2025-11-27 05:28:34,352 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 00:29:23] 2025-11-27 05:28:34,352 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 00:29:23] 2025-11-27 05:28:34,352 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 00:29:23] 2025-11-27 05:28:34,352 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 00:29:23] 2025-11-27 05:28:34,352 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 00:29:23] 2025-11-27 05:28:34,353 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 00:29:23] 2025-11-27 05:28:34,353 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 00:29:23] 2025-11-27 05:28:34,353 | INFO     | job 6896558439 has completed (purged errors)
[2025-11-27 00:29:23] 2025-11-27 05:28:34,353 | INFO     | overall cleanup function is called
[2025-11-27 00:29:23] 2025-11-27 05:28:35,371 | INFO     | --- collectZombieJob: --- 10, [2728325]
[2025-11-27 00:29:23] 2025-11-27 05:28:35,371 | INFO     | zombie collector waiting for pid 2728325
[2025-11-27 00:29:23] 2025-11-27 05:28:35,371 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 00:29:23] 2025-11-27 05:28:35,371 | INFO     | collected zombie processes
[2025-11-27 00:29:23] 2025-11-27 05:28:35,372 | INFO     | will attempt to kill all subprocesses of pid=2728325
[2025-11-27 00:29:23] 2025-11-27 05:28:35,682 | INFO     | process IDs to be killed: [2728325] (in reverse order)
[2025-11-27 00:29:23] 2025-11-27 05:28:35,780 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 00:29:23] 2025-11-27 05:28:35,781 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 00:29:23] 2025-11-27 05:28:35,799 | INFO     | did not find any defunct processes belonging to 2728325
[2025-11-27 00:29:23] 2025-11-27 05:28:35,814 | INFO     | did not find any defunct processes belonging to 2728325
[2025-11-27 00:29:23] 2025-11-27 05:28:35,816 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 00:29:23] 2025-11-27 05:28:35,817 | INFO     | ready for new job
[2025-11-27 00:29:23] 2025-11-27 05:28:35,817 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 00:29:23] 2025-11-27 05:28:35,821 | INFO     | ***************************************
[2025-11-27 00:29:23] 2025-11-27 05:28:35,822 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 00:29:23] 2025-11-27 05:28:35,822 | INFO     | ***************************************
[2025-11-27 00:29:23] 2025-11-27 05:28:35,822 | INFO     | 
[2025-11-27 00:29:23] 2025-11-27 05:28:35,837 | INFO     | architecture information:
[2025-11-27 00:29:23] 2025-11-27 05:28:35,837 | INFO     | executing command: cat /etc/os-release
[2025-11-27 00:29:23] 2025-11-27 05:28:35,850 | INFO     | cat /etc/os-release:
[2025-11-27 00:29:23] NAME="CentOS Linux"
[2025-11-27 00:29:23] VERSION="7 (Core)"
[2025-11-27 00:29:23] ID="centos"
[2025-11-27 00:29:23] ID_LIKE="rhel fedora"
[2025-11-27 00:29:23] VERSION_ID="7"
[2025-11-27 00:29:23] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 00:29:23] ANSI_COLOR="0;31"
[2025-11-27 00:29:23] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 00:29:23] HOME_URL="https://www.centos.org/"
[2025-11-27 00:29:23] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 00:29:23] 
[2025-11-27 00:29:23] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 00:29:23] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 00:29:23] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 00:29:23] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 00:29:23] 
[2025-11-27 00:29:23] 2025-11-27 05:28:35,850 | INFO     | ***************************************
[2025-11-27 00:29:23] 2025-11-27 05:28:36,353 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-11-27 00:29:23] 2025-11-27 05:28:36,367 | INFO     | sufficient remaining disk space (99721674752 B)
[2025-11-27 00:29:23] 2025-11-27 05:28:36,367 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 00:29:23] 2025-11-27 05:28:36,367 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 00:29:23] 2025-11-27 05:28:36,368 | INFO     | update_server=False
[2025-11-27 00:29:23] 2025-11-27 05:28:36,368 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 00:29:23] 2025-11-27 05:28:36,368 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 00:29:23] 2025-11-27 05:28:36,608 | INFO     | all payload control threads have been joined
[2025-11-27 00:29:23] 2025-11-27 05:28:36,657 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-27 00:29:23] 2025-11-27 05:28:36,657 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-27 00:29:23] 2025-11-27 05:28:36,657 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 00:29:23] 2025-11-27 05:28:36,658 | INFO     | will abort loop
[2025-11-27 00:29:23] 2025-11-27 05:28:37,110 | INFO     | all data control threads have been joined
[2025-11-27 00:29:23] 2025-11-27 05:28:37,373 | INFO     | [job] retrieve thread has finished
[2025-11-27 00:29:23] 2025-11-27 05:28:37,613 | INFO     | [payload] control thread has finished
[2025-11-27 00:29:23] 2025-11-27 05:28:37,663 | INFO     | [job] job monitor thread has finished
[2025-11-27 00:29:23] 2025-11-27 05:28:37,674 | INFO     | all job control threads have been joined
[2025-11-27 00:29:23] 2025-11-27 05:28:37,883 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 00:29:23] 2025-11-27 05:28:38,115 | INFO     | [data] control thread has finished
[2025-11-27 00:29:23] 2025-11-27 05:28:38,275 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 00:29:23] 2025-11-27 05:28:38,373 | INFO     | [data] copytool_out thread has finished
[2025-11-27 00:29:23] 2025-11-27 05:28:38,375 | INFO     | [payload] validate_post thread has finished
[2025-11-27 00:29:23] 2025-11-27 05:28:38,440 | INFO     | [job] validate thread has finished
[2025-11-27 00:29:23] 2025-11-27 05:28:38,469 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 00:29:23] 2025-11-27 05:28:38,679 | INFO     | [job] control thread has finished
[2025-11-27 00:29:23] 2025-11-27 05:28:38,727 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 00:29:23] 2025-11-27 05:28:38,826 | INFO     | [data] copytool_in thread has finished
[2025-11-27 00:29:23] 2025-11-27 05:28:38,827 | INFO     | [payload] failed_post thread has finished
[2025-11-27 00:29:23] 2025-11-27 05:28:38,932 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 00:29:23] 2025-11-27 05:28:39,937 | INFO     | [job] queue monitor thread has finished
[2025-11-27 00:29:23] 2025-11-27 05:28:42,475 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 00:29:23] 2025-11-27 05:28:46,747 | INFO     | job.realtimelogging is not enabled
[2025-11-27 00:29:23] 2025-11-27 05:28:47,752 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 00:29:23] 2025-11-27 05:29:06,532 | INFO     | PID=2711440 has CPU usage=2.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 00:29:23] 2025-11-27 05:29:06,533 | INFO     | .. there are 5 such processes running
[2025-11-27 00:29:23] 2025-11-27 05:29:06,533 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 00:29:23] 2025-11-27 05:29:06,533 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 00:29:23] 2025-11-27 05:29:06,533 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 00:29:23] 2025-11-27 05:29:16,920 | INFO     | [monitor] cgroup control has ended
[2025-11-27 00:29:23] 2025-11-27 05:29:17,887 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139795515586368)>', '<ExcThread(monitor, started 139794935965440)>']
[2025-11-27 00:29:23] 2025-11-27 05:29:18,593 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 00:29:23] 2025-11-27 05:29:18,593 | INFO     | [monitor] control thread has ended
[2025-11-27 00:29:23] 2025-11-27 05:29:22,912 | INFO     | all workflow threads have been joined
[2025-11-27 00:29:23] 2025-11-27 05:29:22,912 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 00:29:23] 2025-11-27 05:29:22,913 | INFO     | traces error code: 0
[2025-11-27 00:29:23] 2025-11-27 05:29:22,913 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 00:29:23] 2025-11-27 05:29:23,033 [wrapper] ==== pilot stdout END ====
[2025-11-27 00:29:23] 2025-11-27 05:29:23,035 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 00:29:23] 2025-11-27 05:29:23,038 [wrapper] pilotpid: 2711440
[2025-11-27 00:29:23] 2025-11-27 05:29:23,040 [wrapper] Pilot exit status: 0
[2025-11-27 00:29:23] 2025-11-27 05:29:23,050 [wrapper] pandaids: 6896558439
[2025-11-27 00:29:23] 2025-11-27 05:29:23,112 [wrapper] cleanup supervisor_pilot 2463814 2711441
[2025-11-27 00:29:23] 2025-11-27 05:29:23,115 [wrapper] Test setup, not cleaning
[2025-11-27 00:29:23] 2025-11-27 05:29:23,118 [wrapper] apfmon messages muted
[2025-11-27 00:29:23] 2025-11-27 05:29:23,120 [wrapper] ==== wrapper stdout END ====
[2025-11-27 00:29:23] 2025-11-27 05:29:23,123 [wrapper] ==== wrapper stderr END ====
[2025-11-27 00:29:23]  *** Error codes and diagnostics ***
[2025-11-27 00:29:23]     "exeErrorCode": 0,
[2025-11-27 00:29:23]     "exeErrorDiag": "",
[2025-11-27 00:29:23]     "pilotErrorCode": 0,
[2025-11-27 00:29:23]     "pilotErrorDiag": "",
[2025-11-27 00:29:23]  *** Listing of results directory ***
[2025-11-27 00:29:23] total 1301420
[2025-11-27 00:29:23] -rw-r--r-- 1 boincer umatlas    576529 Nov 24 23:09 pilot3.tar.gz
[2025-11-27 00:29:23] -rwx------ 1 boincer umatlas     36292 Nov 25 00:05 runpilot2-wrapper.sh
[2025-11-27 00:29:23] -rw-r--r-- 1 boincer umatlas      5112 Nov 25 00:05 queuedata.json
[2025-11-27 00:29:23] -rw-r--r-- 1 boincer umatlas       100 Nov 26 07:53 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 00:29:23] -rwxr-xr-x 1 boincer umatlas      7986 Nov 26 07:53 run_atlas
[2025-11-27 00:29:23] -rw-r--r-- 1 boincer umatlas       105 Nov 26 07:53 job.xml
[2025-11-27 00:29:23] -rw-r--r-- 2 boincer umatlas 409407189 Nov 26 07:53 EVNT.47483658._002088.pool.root.1
[2025-11-27 00:29:23] -rw-r--r-- 2 boincer umatlas     15847 Nov 26 07:53 start_atlas.sh
[2025-11-27 00:29:23] drwxrwx--x 2 boincer umatlas      4096 Nov 26 07:53 shared
[2025-11-27 00:29:23] -rw-r--r-- 2 boincer umatlas    590104 Nov 26 07:53 input.tar.gz
[2025-11-27 00:29:23] -rw-r--r-- 1 boincer umatlas         0 Nov 26 07:53 boinc_lockfile
[2025-11-27 00:29:23] -rw-r--r-- 1 boincer umatlas      2784 Nov 26 07:53 pandaJob.out
[2025-11-27 00:29:23] -rw------- 1 boincer umatlas        57 Nov 26 07:53 setup.sh.local
[2025-11-27 00:29:23] -rw------- 1 boincer umatlas    991830 Nov 26 07:53 agis_schedconf.cvmfs.json
[2025-11-27 00:29:23] drwx------ 5 boincer umatlas      4096 Nov 26 07:53 pilot3
[2025-11-27 00:29:23] -rw-r--r-- 1 boincer umatlas       533 Nov 27 00:16 boinc_task_state.xml
[2025-11-27 00:29:23] -rw------- 1 boincer umatlas 898457400 Nov 27 00:27 HITS.47556161._000720.pool.root.1
[2025-11-27 00:29:23] -rw------- 1 boincer umatlas      1065 Nov 27 00:28 memory_monitor_summary.json
[2025-11-27 00:29:23] -rw------- 1 boincer umatlas   1516240 Nov 27 00:28 agis_ddmendpoints.agis.ALL.json
[2025-11-27 00:29:23] -rw------- 1 boincer umatlas   2179508 Nov 27 00:28 log.47556161._000720.job.log.tgz.1
[2025-11-27 00:29:23] -rw------- 1 boincer umatlas        95 Nov 27 00:28 pilot_heartbeat.json
[2025-11-27 00:29:23] -rw------- 1 boincer umatlas      8657 Nov 27 00:28 heartbeat.json
[2025-11-27 00:29:23] -rw-r--r-- 1 boincer umatlas      6014 Nov 27 00:28 init_data.xml
[2025-11-27 00:29:23] -rw-r--r-- 1 boincer umatlas        29 Nov 27 00:29 wrapper_checkpoint.txt
[2025-11-27 00:29:23] -rw------- 1 boincer umatlas      5081 Nov 27 00:29 pilotlog.txt
[2025-11-27 00:29:23] -rw------- 1 boincer umatlas   8251607 Nov 27 00:29 log.47556161._000720.job.log.1
[2025-11-27 00:29:23] -rw------- 1 boincer umatlas       353 Nov 27 00:29 output.list
[2025-11-27 00:29:23] -rw-r--r-- 1 boincer umatlas       620 Nov 27 00:29 runtime_log
[2025-11-27 00:29:23] -rw------- 1 boincer umatlas  10455040 Nov 27 00:29 result.tar.gz
[2025-11-27 00:29:23] -rw-r--r-- 1 boincer umatlas      9338 Nov 27 00:29 runtime_log.err
[2025-11-27 00:29:23] -rw------- 1 boincer umatlas       665 Nov 27 00:29 n0PODmcQ0h8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmvKJKDm0G5gZn.diag
[2025-11-27 00:29:23] -rw-r--r-- 1 boincer umatlas      8192 Nov 27 00:29 boinc_mmap_file
[2025-11-27 00:29:23] -rw-r--r-- 1 boincer umatlas     21767 Nov 27 00:29 stderr.txt
[2025-11-27 00:29:23] HITS file was successfully produced:
[2025-11-27 00:29:23] -rw------- 1 boincer umatlas 898457400 Nov 27 00:27 shared/HITS.pool.root.1
[2025-11-27 00:29:23]  *** Contents of shared directory: ***
[2025-11-27 00:29:23] total 1288028
[2025-11-27 00:29:23] -rw-r--r-- 2 boincer umatlas 409407189 Nov 26 07:53 ATLAS.root_0
[2025-11-27 00:29:23] -rw-r--r-- 2 boincer umatlas     15847 Nov 26 07:53 start_atlas.sh
[2025-11-27 00:29:23] -rw-r--r-- 2 boincer umatlas    590104 Nov 26 07:53 input.tar.gz
[2025-11-27 00:29:23] -rw------- 1 boincer umatlas 898457400 Nov 27 00:27 HITS.pool.root.1
[2025-11-27 00:29:23] -rw------- 1 boincer umatlas  10455040 Nov 27 00:29 result.tar.gz
00:29:25 (2704341): run_atlas exited; CPU time 467678.392665
00:29:25 (2704341): called boinc_finish(0)

</stderr_txt>
]]>

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