Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
13:45:49 (1708159): wrapper (7.7.26015): starting
13:45:49 (1708159): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 13:45:49] Arguments: --nthreads 8
[2025-11-26 13:45:49] Threads: 8
[2025-11-26 13:45:49] Checking for CVMFS
[2025-11-26 13:45:49] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 13:45:50] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 13:45:50] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 13:45:51] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 13:45:51] 2.13.3.0 11226 28730 349080 153331 3 375 30661751 32935937 17423 16776704 0 67261920 99.480 92098409 40210 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 13:45:51] CVMFS is ok
[2025-11-26 13:45:51] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 13:45:51] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 13:45:51] Further information can be found at the LHC@home message board.
[2025-11-26 13:45:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 13:45:51] Checking for apptainer binary...
[2025-11-26 13:45:51] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 13:45:51] Running /usr/bin/apptainer --version
[2025-11-26 13:45:51] apptainer version 1.4.4-1.el9
[2025-11-26 13:45:51] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 13:45:52] c6-2-29-3.aglt2.org
[2025-11-26 13:45:52] apptainer works
[2025-11-26 13:45:52] Set ATHENA_PROC_NUMBER=8
[2025-11-26 13:45:52] Set ATHENA_CORE_NUMBER=8
[2025-11-26 13:45:52] Starting ATLAS job with PandaID=6896558423
[2025-11-26 13:45:52] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 14:55:37]  *** The last 200 lines of the pilot log: ***
[2025-11-27 14:55:37] 2025-11-27 19:54:27,470 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 14:55:37] 2025-11-27 19:54:29,251 | INFO     | PID=1712555 has CPU usage=12.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-27 14:55:37] 2025-11-27 19:54:29,251 | INFO     | .. there are 32 such processes running
[2025-11-27 14:55:37] 2025-11-27 19:54:29,975 | INFO     | monitor loop #5429: job 0:6896558423 is in state 'finished'
[2025-11-27 14:55:37] 2025-11-27 19:54:29,975 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 14:55:37] 2025-11-27 19:54:30,252 | INFO     | time since job start (90463s) is within the limit (172800.0s)
[2025-11-27 14:55:37] 2025-11-27 19:54:32,260 | INFO     | time since job start (90465s) is within the limit (172800.0s)
[2025-11-27 14:55:37] 2025-11-27 19:54:32,488 | INFO     | monitor loop #5430: job 0:6896558423 is in state 'finished'
[2025-11-27 14:55:37] 2025-11-27 19:54:32,488 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 14:55:37] 2025-11-27 19:54:34,266 | INFO     | time since job start (90467s) is within the limit (172800.0s)
[2025-11-27 14:55:37] 2025-11-27 19:54:34,997 | INFO     | monitor loop #5431: job 0:6896558423 is in state 'finished'
[2025-11-27 14:55:37] 2025-11-27 19:54:34,997 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 14:55:37] 2025-11-27 19:54:36,281 | INFO     | time since job start (90469s) is within the limit (172800.0s)
[2025-11-27 14:55:37] 2025-11-27 19:54:37,478 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 14:55:37] 2025-11-27 19:54:37,482 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2889.112035714286
[2025-11-27 14:55:37] 2025-11-27 19:54:37,522 | INFO     | monitor loop #5432: job 0:6896558423 is in state 'finished'
[2025-11-27 14:55:37] 2025-11-27 19:54:37,522 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 14:55:37] 2025-11-27 19:54:37,525 | INFO     | using path: /tmp/boinchome/slots/4/PanDA_Pilot-6896558423/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 14:55:37] 2025-11-27 19:54:37,525 | INFO     | extracted standard info from prmon json
[2025-11-27 14:55:37] 2025-11-27 19:54:37,526 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 14:55:37] 2025-11-27 19:54:37,526 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 14:55:37] 2025-11-27 19:54:37,576 | INFO     | fitting pss+swap vs Time
[2025-11-27 14:55:37] 2025-11-27 19:54:37,578 | INFO     | sum of square deviations: 1009313982346.3519
[2025-11-27 14:55:37] 2025-11-27 19:54:37,654 | INFO     | sum of deviations: 3829752914590.6304
[2025-11-27 14:55:37] 2025-11-27 19:54:37,658 | INFO     | mean x: 1764228044.9790823
[2025-11-27 14:55:37] 2025-11-27 19:54:37,658 | INFO     | mean y: 2953257.504048583
[2025-11-27 14:55:37] 2025-11-27 19:54:37,658 | INFO     | intersect: -6691254506.81742
[2025-11-27 14:55:37] 2025-11-27 19:54:37,660 | INFO     | chi2: 15.982801271013846
[2025-11-27 14:55:37] 2025-11-27 19:54:37,666 | INFO     | sum of square deviations: 999133427442.8755
[2025-11-27 14:55:37] 2025-11-27 19:54:37,741 | INFO     | sum of deviations: 4323085687333.94
[2025-11-27 14:55:37] 2025-11-27 19:54:37,742 | INFO     | mean x: 1764227892.4840894
[2025-11-27 14:55:37] 2025-11-27 19:54:37,742 | INFO     | mean y: 2960645.9763033176
[2025-11-27 14:55:37] 2025-11-27 19:54:37,742 | INFO     | intersect: -7630562707.068903
[2025-11-27 14:55:37] 2025-11-27 19:54:37,743 | INFO     | chi2: 12.902648356212168
[2025-11-27 14:55:37] 2025-11-27 19:54:37,743 | INFO     | current chi2=12.902648356212168 (change=19.27167123317609 %)
[2025-11-27 14:55:37] 2025-11-27 19:54:37,744 | INFO     | right removable region: 1476
[2025-11-27 14:55:37] 2025-11-27 19:54:37,749 | INFO     | sum of square deviations: 999132090322.8756
[2025-11-27 14:55:37] 2025-11-27 19:54:37,822 | INFO     | sum of deviations: 3298307329849.537
[2025-11-27 14:55:37] 2025-11-27 19:54:37,823 | INFO     | mean x: 1764228197.4840894
[2025-11-27 14:55:37] 2025-11-27 19:54:37,823 | INFO     | mean y: 2961214.7251184834
[2025-11-27 14:55:37] 2025-11-27 19:54:37,823 | INFO     | intersect: -5821060305.200814
[2025-11-27 14:55:37] 2025-11-27 19:54:37,829 | INFO     | chi2: 12.850373442066822
[2025-11-27 14:55:37] 2025-11-27 19:54:37,829 | INFO     | current chi2=12.850373442066822 (change=19.598741020624125 %)
[2025-11-27 14:55:37] 2025-11-27 19:54:37,829 | INFO     | left removable region: 10
[2025-11-27 14:55:37] 2025-11-27 19:54:37,831 | INFO     | sum of square deviations: 976975384002.9188
[2025-11-27 14:55:37] 2025-11-27 19:54:37,906 | INFO     | sum of deviations: 3741747412742.209
[2025-11-27 14:55:37] 2025-11-27 19:54:37,906 | INFO     | mean x: 1764228166.9924965
[2025-11-27 14:55:37] 2025-11-27 19:54:37,906 | INFO     | mean y: 2972491.3826739425
[2025-11-27 14:55:37] 2025-11-27 19:54:37,907 | INFO     | intersect: -6753898037.211301
[2025-11-27 14:55:37] 2025-11-27 19:54:37,912 | INFO     | chi2: 8.898951528231988
[2025-11-27 14:55:37] 2025-11-27 19:54:37,913 | INFO     | current memory leak: 3.83 B/s (using 1466 data points, chi2=8.90)
[2025-11-27 14:55:37] 2025-11-27 19:54:37,914 | INFO     | could have reported an average CPU frequency of 2845 MHz (53 samples)
[2025-11-27 14:55:37] 2025-11-27 19:54:37,914 | INFO     | ..............................
[2025-11-27 14:55:37] 2025-11-27 19:54:37,914 | INFO     | . Timing measurements:
[2025-11-27 14:55:37] 2025-11-27 19:54:37,914 | INFO     | . get job = 0 s
[2025-11-27 14:55:37] 2025-11-27 19:54:37,915 | INFO     | . initial setup = 4 s
[2025-11-27 14:55:37] 2025-11-27 19:54:37,915 | INFO     | . payload setup = 18 s
[2025-11-27 14:55:37] 2025-11-27 19:54:37,919 | INFO     | . stage-in = 0 s
[2025-11-27 14:55:37] 2025-11-27 19:54:37,919 | INFO     | . payload execution = 90377 s
[2025-11-27 14:55:37] 2025-11-27 19:54:37,919 | INFO     | . stage-out = 9 s
[2025-11-27 14:55:37] 2025-11-27 19:54:37,919 | INFO     | . log creation = 3 s
[2025-11-27 14:55:37] 2025-11-27 19:54:37,919 | INFO     | ..............................
[2025-11-27 14:55:37] 2025-11-27 19:54:38,115 | INFO     | 
[2025-11-27 14:55:37] 2025-11-27 19:54:38,115 | INFO     | job summary report
[2025-11-27 14:55:37] 2025-11-27 19:54:38,116 | INFO     | --------------------------------------------------
[2025-11-27 14:55:37] 2025-11-27 19:54:38,116 | INFO     | PanDA job id: 6896558423
[2025-11-27 14:55:37] 2025-11-27 19:54:38,116 | INFO     | task id: 47556161
[2025-11-27 14:55:37] 2025-11-27 19:54:38,116 | INFO     | errors: (none)
[2025-11-27 14:55:37] 2025-11-27 19:54:38,116 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 14:55:37] 2025-11-27 19:54:38,116 | INFO     | pilot state: finished 
[2025-11-27 14:55:37] 2025-11-27 19:54:38,116 | INFO     | transexitcode: 0
[2025-11-27 14:55:37] 2025-11-27 19:54:38,116 | INFO     | exeerrorcode: 0
[2025-11-27 14:55:37] 2025-11-27 19:54:38,116 | INFO     | exeerrordiag: 
[2025-11-27 14:55:37] 2025-11-27 19:54:38,116 | INFO     | exitcode: 0
[2025-11-27 14:55:37] 2025-11-27 19:54:38,116 | INFO     | exitmsg: OK
[2025-11-27 14:55:37] 2025-11-27 19:54:38,116 | INFO     | cpuconsumptiontime: 246410 s
[2025-11-27 14:55:37] 2025-11-27 19:54:38,116 | INFO     | nevents: 1000
[2025-11-27 14:55:37] 2025-11-27 19:54:38,117 | INFO     | neventsw: 0
[2025-11-27 14:55:37] 2025-11-27 19:54:38,117 | INFO     | pid: 1722418
[2025-11-27 14:55:37] 2025-11-27 19:54:38,117 | INFO     | pgrp: 1722418
[2025-11-27 14:55:37] 2025-11-27 19:54:38,117 | INFO     | corecount: 8
[2025-11-27 14:55:37] 2025-11-27 19:54:38,117 | INFO     | event service: False
[2025-11-27 14:55:37] 2025-11-27 19:54:38,117 | INFO     | sizes: {0: 2284090, 1: 2284289, 12: 2284289, 13: 2284579, 23: 2284635, 90399: 2352041, 90400: 2352168, 90410: 2361246, 90411: 2361302, 90436: 2361644}
[2025-11-27 14:55:37] 2025-11-27 19:54:38,117 | INFO     | --------------------------------------------------
[2025-11-27 14:55:37] 2025-11-27 19:54:38,117 | INFO     | 
[2025-11-27 14:55:37] 2025-11-27 19:54:38,117 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2025-11-27 14:55:37] 2025-11-27 19:54:38,192 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 14:55:37] 2025-11-27 19:54:38,193 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 14:55:37] 2025-11-27 19:54:38,193 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 14:55:37] 2025-11-27 19:54:38,193 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 14:55:37] 2025-11-27 19:54:38,193 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 14:55:37] 2025-11-27 19:54:38,193 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 14:55:37] 2025-11-27 19:54:38,193 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 14:55:37] 2025-11-27 19:54:38,193 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 14:55:37] 2025-11-27 19:54:38,193 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 14:55:37] 2025-11-27 19:54:38,193 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 14:55:37] 2025-11-27 19:54:38,194 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 14:55:37] 2025-11-27 19:54:38,194 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 14:55:37] 2025-11-27 19:54:38,194 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 14:55:37] 2025-11-27 19:54:38,194 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 14:55:37] 2025-11-27 19:54:38,194 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 14:55:37] 2025-11-27 19:54:38,194 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 14:55:37] 2025-11-27 19:54:38,194 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 14:55:37] 2025-11-27 19:54:38,194 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 14:55:37] 2025-11-27 19:54:38,194 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 14:55:37] 2025-11-27 19:54:38,194 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 14:55:37] 2025-11-27 19:54:38,195 | INFO     | job 6896558423 has completed (purged errors)
[2025-11-27 14:55:37] 2025-11-27 19:54:38,195 | INFO     | overall cleanup function is called
[2025-11-27 14:55:37] 2025-11-27 19:54:39,222 | INFO     | --- collectZombieJob: --- 10, [1722418]
[2025-11-27 14:55:37] 2025-11-27 19:54:39,222 | INFO     | zombie collector waiting for pid 1722418
[2025-11-27 14:55:37] 2025-11-27 19:54:39,222 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 14:55:37] 2025-11-27 19:54:39,222 | INFO     | collected zombie processes
[2025-11-27 14:55:37] 2025-11-27 19:54:39,223 | INFO     | will attempt to kill all subprocesses of pid=1722418
[2025-11-27 14:55:37] 2025-11-27 19:54:41,000 | INFO     | process IDs to be killed: [1722418] (in reverse order)
[2025-11-27 14:55:37] 2025-11-27 19:54:41,302 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 14:55:37] 2025-11-27 19:54:41,302 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 14:55:37] 2025-11-27 19:54:41,340 | INFO     | did not find any defunct processes belonging to 1722418
[2025-11-27 14:55:37] 2025-11-27 19:54:41,465 | INFO     | did not find any defunct processes belonging to 1722418
[2025-11-27 14:55:37] 2025-11-27 19:54:41,496 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 14:55:37] 2025-11-27 19:54:41,496 | INFO     | ready for new job
[2025-11-27 14:55:37] 2025-11-27 19:54:41,497 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 14:55:37] 2025-11-27 19:54:41,523 | INFO     | ***************************************
[2025-11-27 14:55:37] 2025-11-27 19:54:41,523 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 14:55:37] 2025-11-27 19:54:41,524 | INFO     | ***************************************
[2025-11-27 14:55:37] 2025-11-27 19:54:41,524 | INFO     | 
[2025-11-27 14:55:37] 2025-11-27 19:54:41,543 | INFO     | architecture information:
[2025-11-27 14:55:37] 2025-11-27 19:54:41,551 | INFO     | executing command: cat /etc/os-release
[2025-11-27 14:55:37] 2025-11-27 19:54:41,601 | INFO     | cat /etc/os-release:
[2025-11-27 14:55:37] NAME="CentOS Linux"
[2025-11-27 14:55:37] VERSION="7 (Core)"
[2025-11-27 14:55:37] ID="centos"
[2025-11-27 14:55:37] ID_LIKE="rhel fedora"
[2025-11-27 14:55:37] VERSION_ID="7"
[2025-11-27 14:55:37] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 14:55:37] ANSI_COLOR="0;31"
[2025-11-27 14:55:37] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 14:55:37] HOME_URL="https://www.centos.org/"
[2025-11-27 14:55:37] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 14:55:37] 
[2025-11-27 14:55:37] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 14:55:37] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 14:55:37] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 14:55:37] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 14:55:37] 
[2025-11-27 14:55:37] 2025-11-27 19:54:41,602 | INFO     | ***************************************
[2025-11-27 14:55:37] 2025-11-27 19:54:42,106 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2025-11-27 14:55:37] 2025-11-27 19:54:42,277 | INFO     | sufficient remaining disk space (69317165056 B)
[2025-11-27 14:55:37] 2025-11-27 19:54:42,278 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 14:55:37] 2025-11-27 19:54:42,278 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 14:55:37] 2025-11-27 19:54:42,278 | INFO     | update_server=False
[2025-11-27 14:55:37] 2025-11-27 19:54:42,278 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 14:55:37] 2025-11-27 19:54:42,282 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 14:55:37] 2025-11-27 19:54:42,550 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-27 14:55:37] 2025-11-27 19:54:42,550 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-27 14:55:37] 2025-11-27 19:54:42,550 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 14:55:37] 2025-11-27 19:54:42,551 | INFO     | will abort loop
[2025-11-27 14:55:37] 2025-11-27 19:54:42,726 | INFO     | all job control threads have been joined
[2025-11-27 14:55:37] 2025-11-27 19:54:43,054 | INFO     | all payload control threads have been joined
[2025-11-27 14:55:37] 2025-11-27 19:54:43,134 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 14:55:37] 2025-11-27 19:54:43,134 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 14:55:37] 2025-11-27 19:54:43,284 | INFO     | [job] retrieve thread has finished
[2025-11-27 14:55:37] 2025-11-27 19:54:43,332 | INFO     | [payload] failed_post thread has finished
[2025-11-27 14:55:37] 2025-11-27 19:54:43,361 | INFO     | all data control threads have been joined
[2025-11-27 14:55:37] 2025-11-27 19:54:43,464 | INFO     | [job] validate thread has finished
[2025-11-27 14:55:37] 2025-11-27 19:54:43,556 | INFO     | [job] job monitor thread has finished
[2025-11-27 14:55:37] 2025-11-27 19:54:43,732 | INFO     | [job] control thread has finished
[2025-11-27 14:55:37] 2025-11-27 19:54:43,966 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 14:55:37] 2025-11-27 19:54:43,967 | INFO     | [data] copytool_in thread has finished
[2025-11-27 14:55:37] 2025-11-27 19:54:43,984 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 14:55:37] 2025-11-27 19:54:44,035 | INFO     | [payload] validate_post thread has finished
[2025-11-27 14:55:37] 2025-11-27 19:54:44,062 | INFO     | [payload] control thread has finished
[2025-11-27 14:55:37] 2025-11-27 19:54:44,142 | INFO     | [job] queue monitor thread has finished
[2025-11-27 14:55:37] 2025-11-27 19:54:44,297 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 14:55:37] 2025-11-27 19:54:44,368 | INFO     | [data] control thread has finished
[2025-11-27 14:55:37] 2025-11-27 19:54:44,631 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 14:55:37] 2025-11-27 19:54:45,155 | INFO     | [data] copytool_out thread has finished
[2025-11-27 14:55:37] 2025-11-27 19:54:46,291 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 14:55:37] 2025-11-27 19:55:12,109 | INFO     | PID=1712555 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 14:55:37] 2025-11-27 19:55:12,109 | INFO     | .. there are 32 such processes running
[2025-11-27 14:55:37] 2025-11-27 19:55:12,110 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 14:55:37] 2025-11-27 19:55:12,110 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 14:55:37] 2025-11-27 19:55:12,110 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 14:55:37] 2025-11-27 19:55:30,256 | INFO     | [monitor] cgroup control has ended
[2025-11-27 14:55:37] 2025-11-27 19:55:31,463 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139688272402240)>', '<ExcThread(monitor, started 139687930865408)>']
[2025-11-27 14:55:37] 2025-11-27 19:55:32,304 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 14:55:37] 2025-11-27 19:55:32,304 | INFO     | [monitor] control thread has ended
[2025-11-27 14:55:37] 2025-11-27 19:55:36,489 | INFO     | all workflow threads have been joined
[2025-11-27 14:55:37] 2025-11-27 19:55:36,489 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 14:55:37] 2025-11-27 19:55:36,490 | INFO     | traces error code: 0
[2025-11-27 14:55:37] 2025-11-27 19:55:36,490 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 14:55:37] 2025-11-27 19:55:37,108 [wrapper] ==== pilot stdout END ====
[2025-11-27 14:55:37] 2025-11-27 19:55:37,153 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 14:55:37] 2025-11-27 19:55:37,174 [wrapper] pilotpid: 1712555
[2025-11-27 14:55:37] 2025-11-27 19:55:37,198 [wrapper] Pilot exit status: 0
[2025-11-27 14:55:37] 2025-11-27 19:55:37,253 [wrapper] pandaids: 6896558423
[2025-11-27 14:55:37] 2025-11-27 19:55:37,458 [wrapper] cleanup supervisor_pilot 2596867 1712556
[2025-11-27 14:55:37] 2025-11-27 19:55:37,475 [wrapper] Test setup, not cleaning
[2025-11-27 14:55:37] 2025-11-27 19:55:37,488 [wrapper] apfmon messages muted
[2025-11-27 14:55:37] 2025-11-27 19:55:37,491 [wrapper] ==== wrapper stdout END ====
[2025-11-27 14:55:37] 2025-11-27 19:55:37,494 [wrapper] ==== wrapper stderr END ====
[2025-11-27 14:55:37]  *** Error codes and diagnostics ***
[2025-11-27 14:55:37]     "exeErrorCode": 0,
[2025-11-27 14:55:37]     "exeErrorDiag": "",
[2025-11-27 14:55:37]     "pilotErrorCode": 0,
[2025-11-27 14:55:37]     "pilotErrorDiag": "",
[2025-11-27 14:55:37]  *** Listing of results directory ***
[2025-11-27 14:55:38] total 1319164
[2025-11-27 14:55:38] -rw-r--r--. 1 boincer umatlas    576529 Nov 24 23:09 pilot3.tar.gz
[2025-11-27 14:55:38] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 00:01 queuedata.json
[2025-11-27 14:55:38] -rwx------. 1 boincer umatlas     36292 Nov 25 00:04 runpilot2-wrapper.sh
[2025-11-27 14:55:38] -rw-r--r--. 1 boincer umatlas       100 Nov 26 13:45 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 14:55:38] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 13:45 run_atlas
[2025-11-27 14:55:38] -rw-r--r--. 1 boincer umatlas       105 Nov 26 13:45 job.xml
[2025-11-27 14:55:38] -rw-r--r--. 2 boincer umatlas 409701822 Nov 26 13:45 EVNT.47483658._002087.pool.root.1
[2025-11-27 14:55:38] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 13:45 start_atlas.sh
[2025-11-27 14:55:38] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 13:45 shared
[2025-11-27 14:55:38] -rw-r--r--. 2 boincer umatlas    590106 Nov 26 13:45 input.tar.gz
[2025-11-27 14:55:38] -rw-r--r--. 1 boincer umatlas         0 Nov 26 13:45 boinc_lockfile
[2025-11-27 14:55:38] -rw-r--r--. 1 boincer umatlas      2783 Nov 26 13:45 pandaJob.out
[2025-11-27 14:55:38] -rw-------. 1 boincer umatlas        57 Nov 26 13:45 setup.sh.local
[2025-11-27 14:55:38] -rw-------. 1 boincer umatlas    991522 Nov 26 13:46 agis_schedconf.cvmfs.json
[2025-11-27 14:55:38] drwx------. 5 boincer umatlas      4096 Nov 26 13:46 pilot3
[2025-11-27 14:55:38] -rw-r--r--. 1 boincer umatlas       533 Nov 27 14:23 boinc_task_state.xml
[2025-11-27 14:55:38] -rw-------. 1 boincer umatlas 909434590 Nov 27 14:52 HITS.47556161._000704.pool.root.1
[2025-11-27 14:55:38] -rw-------. 1 boincer umatlas      1058 Nov 27 14:53 memory_monitor_summary.json
[2025-11-27 14:55:38] -rw-------. 1 boincer umatlas   1516240 Nov 27 14:54 agis_ddmendpoints.agis.ALL.json
[2025-11-27 14:55:38] -rw-------. 1 boincer umatlas   2489379 Nov 27 14:54 log.47556161._000704.job.log.tgz.1
[2025-11-27 14:55:38] -rw-------. 1 boincer umatlas        95 Nov 27 14:54 pilot_heartbeat.json
[2025-11-27 14:55:38] -rw-r--r--. 1 boincer umatlas      6845 Nov 27 14:54 init_data.xml
[2025-11-27 14:55:38] -rw-------. 1 boincer umatlas      8619 Nov 27 14:54 heartbeat.json
[2025-11-27 14:55:38] -rw-------. 1 boincer umatlas      5010 Nov 27 14:55 pilotlog.txt
[2025-11-27 14:55:38] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 14:55 boinc_mmap_file
[2025-11-27 14:55:38] -rw-r--r--. 1 boincer umatlas        29 Nov 27 14:55 wrapper_checkpoint.txt
[2025-11-27 14:55:38] -rw-------. 1 boincer umatlas  11397235 Nov 27 14:55 log.47556161._000704.job.log.1
[2025-11-27 14:55:38] -rw-------. 1 boincer umatlas       353 Nov 27 14:55 output.list
[2025-11-27 14:55:38] -rw-r--r--. 1 boincer umatlas       620 Nov 27 14:55 runtime_log
[2025-11-27 14:55:38] -rw-------. 1 boincer umatlas  13905920 Nov 27 14:55 result.tar.gz
[2025-11-27 14:55:38] -rw-r--r--. 1 boincer umatlas      9348 Nov 27 14:55 runtime_log.err
[2025-11-27 14:55:38] -rw-------. 1 boincer umatlas       661 Nov 27 14:55 KOrNDmgP0h8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmc8LKDmLqoZ4m.diag
[2025-11-27 14:55:38] -rw-r--r--. 1 boincer umatlas     21872 Nov 27 14:55 stderr.txt
[2025-11-27 14:55:38] HITS file was successfully produced:
[2025-11-27 14:55:38] -rw-------. 1 boincer umatlas 909434590 Nov 27 14:52 shared/HITS.pool.root.1
[2025-11-27 14:55:38]  *** Contents of shared directory: ***
[2025-11-27 14:55:38] total 1302400
[2025-11-27 14:55:38] -rw-r--r--. 2 boincer umatlas 409701822 Nov 26 13:45 ATLAS.root_0
[2025-11-27 14:55:38] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 13:45 start_atlas.sh
[2025-11-27 14:55:38] -rw-r--r--. 2 boincer umatlas    590106 Nov 26 13:45 input.tar.gz
[2025-11-27 14:55:38] -rw-------. 1 boincer umatlas 909434590 Nov 27 14:52 HITS.pool.root.1
[2025-11-27 14:55:38] -rw-------. 1 boincer umatlas  13905920 Nov 27 14:55 result.tar.gz
14:55:40 (1708159): run_atlas exited; CPU time 249001.448993
14:55:40 (1708159): called boinc_finish(0)

</stderr_txt>
]]>

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