Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
14:12:36 (5166): wrapper (7.7.26015): starting
14:12:36 (5166): wrapper: running run_atlas (--nthreads 4)
[2025-11-26 14:12:36] Arguments: --nthreads 4
[2025-11-26 14:12:36] Threads: 4
[2025-11-26 14:12:36] Checking for CVMFS
[2025-11-26 14:12:40] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 14:12:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 14:12:40] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 14:12:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 14:12:40] 2.13.3.0 5386 0 29356 153322 4 1 2397707 4096000 0 130560 0 0 0.000 1292 514 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.35.184:3128 1
[2025-11-26 14:12:40] CVMFS is ok
[2025-11-26 14:12:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 14:12:40] Checking for apptainer binary...
[2025-11-26 14:12:40] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 14:12:40] Running /usr/bin/apptainer --version
[2025-11-26 14:12:40] apptainer version 1.4.4-1.el9
[2025-11-26 14:12:40] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 14:12:41] ahanllin05
[2025-11-26 14:12:41] apptainer works
[2025-11-26 14:12:41] Set ATHENA_PROC_NUMBER=4
[2025-11-26 14:12:41] Set ATHENA_CORE_NUMBER=4
[2025-11-26 14:12:41] Starting ATLAS job with PandaID=6895345551
[2025-11-26 14:12:41] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 08:12:13]  *** The last 200 lines of the pilot log: ***
[2025-11-27 08:12:13] 2025-11-27 07:11:09,900 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 08:12:13] 2025-11-27 07:11:10,021 | INFO     | time since job start (64670s) is within the limit (172800.0s)
[2025-11-27 08:12:13] 2025-11-27 07:11:10,702 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 08:12:13] 2025-11-27 07:11:10,703 | INFO     | found 4 cores (4 cores per socket, 1 socket) , CPU MHz: 806.4
[2025-11-27 08:12:13] 2025-11-27 07:11:10,704 | INFO     | using path: /var/lib/boinc/slots/0/PanDA_Pilot-6895345551/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 08:12:13] 2025-11-27 07:11:10,704 | INFO     | extracted standard info from prmon json
[2025-11-27 08:12:13] 2025-11-27 07:11:10,704 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 08:12:13] 2025-11-27 07:11:10,704 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 08:12:13] 2025-11-27 07:11:10,712 | INFO     | fitting pss+swap vs Time
[2025-11-27 08:12:13] 2025-11-27 07:11:10,713 | INFO     | sum of square deviations: 369313882645.0
[2025-11-27 08:12:13] 2025-11-27 07:11:10,723 | INFO     | sum of deviations: 1325792095131.5
[2025-11-27 08:12:13] 2025-11-27 07:11:10,723 | INFO     | mean x: 1764195130.5
[2025-11-27 08:12:13] 2025-11-27 07:11:10,723 | INFO     | mean y: 2386540.517924528
[2025-11-27 08:12:13] 2025-11-27 07:11:10,723 | INFO     | intersect: -6330860240.065972
[2025-11-27 08:12:13] 2025-11-27 07:11:10,724 | INFO     | chi2: 5.1942057301111895
[2025-11-27 08:12:13] 2025-11-27 07:11:10,724 | INFO     | sum of square deviations: 364112352560.0
[2025-11-27 08:12:13] 2025-11-27 07:11:10,734 | INFO     | sum of deviations: 1455221832210.0007
[2025-11-27 08:12:13] 2025-11-27 07:11:10,734 | INFO     | mean x: 1764194978.0
[2025-11-27 08:12:13] 2025-11-27 07:11:10,734 | INFO     | mean y: 2390328.215165877
[2025-11-27 08:12:13] 2025-11-27 07:11:10,734 | INFO     | intersect: -7048441730.106152
[2025-11-27 08:12:13] 2025-11-27 07:11:10,735 | INFO     | chi2: 4.253601546191963
[2025-11-27 08:12:13] 2025-11-27 07:11:10,735 | INFO     | current chi2=4.253601546191963 (change=18.10872023159335 %)
[2025-11-27 08:12:13] 2025-11-27 07:11:10,735 | INFO     | right removable region: 1054
[2025-11-27 08:12:13] 2025-11-27 07:11:10,735 | INFO     | sum of square deviations: 364112352560.0
[2025-11-27 08:12:13] 2025-11-27 07:11:10,745 | INFO     | sum of deviations: 1018485177153.9998
[2025-11-27 08:12:13] 2025-11-27 07:11:10,745 | INFO     | mean x: 1764195283.0
[2025-11-27 08:12:13] 2025-11-27 07:11:10,745 | INFO     | mean y: 2395547.0587677723
[2025-11-27 08:12:13] 2025-11-27 07:11:10,745 | INFO     | intersect: -4932363553.278045
[2025-11-27 08:12:13] 2025-11-27 07:11:10,746 | INFO     | chi2: 1.9637601381945862
[2025-11-27 08:12:13] 2025-11-27 07:11:10,746 | INFO     | current chi2=1.9637601381945862 (change=62.19325455650465 %)
[2025-11-27 08:12:13] 2025-11-27 07:11:10,746 | INFO     | sum of square deviations: 358959893162.5
[2025-11-27 08:12:13] 2025-11-27 07:11:10,756 | INFO     | sum of deviations: 870845480040.4999
[2025-11-27 08:12:13] 2025-11-27 07:11:10,756 | INFO     | mean x: 1764195435.5
[2025-11-27 08:12:13] 2025-11-27 07:11:10,756 | INFO     | mean y: 2399910.7247619047
[2025-11-27 08:12:13] 2025-11-27 07:11:10,756 | INFO     | intersect: -4277581363.444381
[2025-11-27 08:12:13] 2025-11-27 07:11:10,757 | INFO     | chi2: 1.0787681107415312
[2025-11-27 08:12:13] 2025-11-27 07:11:10,757 | INFO     | current chi2=1.0787681107415312 (change=45.06619776215064 %)
[2025-11-27 08:12:13] 2025-11-27 07:11:10,757 | INFO     | sum of square deviations: 353856271890.0
[2025-11-27 08:12:13] 2025-11-27 07:11:10,767 | INFO     | sum of deviations: 832867410892.9999
[2025-11-27 08:12:13] 2025-11-27 07:11:10,767 | INFO     | mean x: 1764195588.0
[2025-11-27 08:12:13] 2025-11-27 07:11:10,767 | INFO     | mean y: 2401045.023923445
[2025-11-27 08:12:13] 2025-11-27 07:11:10,767 | INFO     | intersect: -4149965688.0523067
[2025-11-27 08:12:13] 2025-11-27 07:11:10,768 | INFO     | chi2: 1.0545179298645806
[2025-11-27 08:12:13] 2025-11-27 07:11:10,768 | INFO     | current chi2=1.0545179298645806 (change=2.247951217271465 %)
[2025-11-27 08:12:13] 2025-11-27 07:11:10,768 | INFO     | left removable region: 30
[2025-11-27 08:12:13] 2025-11-27 07:11:10,768 | INFO     | sum of square deviations: 332949126400.0
[2025-11-27 08:12:13] 2025-11-27 07:11:10,777 | INFO     | sum of deviations: 887031245172.5
[2025-11-27 08:12:13] 2025-11-27 07:11:10,777 | INFO     | mean x: 1764195862.5
[2025-11-27 08:12:13] 2025-11-27 07:11:10,778 | INFO     | mean y: 2407165.2939453125
[2025-11-27 08:12:13] 2025-11-27 07:11:10,778 | INFO     | intersect: -4697700834.873938
[2025-11-27 08:12:13] 2025-11-27 07:11:10,778 | INFO     | chi2: 0.09312916396205204
[2025-11-27 08:12:13] 2025-11-27 07:11:10,778 | INFO     | current memory leak: 2.66 B/s (using 1024 data points, chi2=0.09)
[2025-11-27 08:12:13] 2025-11-27 07:11:10,779 | INFO     | could have reported an average CPU frequency of 806 MHz (39 samples)
[2025-11-27 08:12:13] 2025-11-27 07:11:10,779 | INFO     | ..............................
[2025-11-27 08:12:13] 2025-11-27 07:11:10,779 | INFO     | . Timing measurements:
[2025-11-27 08:12:13] 2025-11-27 07:11:10,779 | INFO     | . get job = 0 s
[2025-11-27 08:12:13] 2025-11-27 07:11:10,779 | INFO     | . initial setup = 3 s
[2025-11-27 08:12:13] 2025-11-27 07:11:10,779 | INFO     | . payload setup = 14 s
[2025-11-27 08:12:13] 2025-11-27 07:11:10,779 | INFO     | . stage-in = 0 s
[2025-11-27 08:12:13] 2025-11-27 07:11:10,779 | INFO     | . payload execution = 64632 s
[2025-11-27 08:12:13] 2025-11-27 07:11:10,779 | INFO     | . stage-out = 1 s
[2025-11-27 08:12:13] 2025-11-27 07:11:10,779 | INFO     | . log creation = 0 s
[2025-11-27 08:12:13] 2025-11-27 07:11:10,779 | INFO     | ..............................
[2025-11-27 08:12:13] 2025-11-27 07:11:10,854 | INFO     | 
[2025-11-27 08:12:13] 2025-11-27 07:11:10,855 | INFO     | job summary report
[2025-11-27 08:12:13] 2025-11-27 07:11:10,855 | INFO     | --------------------------------------------------
[2025-11-27 08:12:13] 2025-11-27 07:11:10,855 | INFO     | PanDA job id: 6895345551
[2025-11-27 08:12:13] 2025-11-27 07:11:10,855 | INFO     | task id: 47556149
[2025-11-27 08:12:13] 2025-11-27 07:11:10,855 | INFO     | errors: (none)
[2025-11-27 08:12:13] 2025-11-27 07:11:10,855 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 08:12:13] 2025-11-27 07:11:10,855 | INFO     | pilot state: finished 
[2025-11-27 08:12:13] 2025-11-27 07:11:10,855 | INFO     | transexitcode: 0
[2025-11-27 08:12:13] 2025-11-27 07:11:10,855 | INFO     | exeerrorcode: 0
[2025-11-27 08:12:13] 2025-11-27 07:11:10,855 | INFO     | exeerrordiag: 
[2025-11-27 08:12:13] 2025-11-27 07:11:10,855 | INFO     | exitcode: 0
[2025-11-27 08:12:13] 2025-11-27 07:11:10,855 | INFO     | exitmsg: OK
[2025-11-27 08:12:13] 2025-11-27 07:11:10,855 | INFO     | cpuconsumptiontime: 247289 s
[2025-11-27 08:12:13] 2025-11-27 07:11:10,855 | INFO     | nevents: 1000
[2025-11-27 08:12:13] 2025-11-27 07:11:10,855 | INFO     | neventsw: 0
[2025-11-27 08:12:13] 2025-11-27 07:11:10,855 | INFO     | pid: 15812
[2025-11-27 08:12:13] 2025-11-27 07:11:10,855 | INFO     | pgrp: 15812
[2025-11-27 08:12:13] 2025-11-27 07:11:10,855 | INFO     | corecount: 4
[2025-11-27 08:12:13] 2025-11-27 07:11:10,855 | INFO     | event service: False
[2025-11-27 08:12:13] 2025-11-27 07:11:10,855 | INFO     | sizes: {0: 2284261, 2: 2284523, 11: 2284551, 64650: 2339986, 64652: 2349036, 64657: 2349226}
[2025-11-27 08:12:13] 2025-11-27 07:11:10,856 | INFO     | --------------------------------------------------
[2025-11-27 08:12:13] 2025-11-27 07:11:10,856 | INFO     | 
[2025-11-27 08:12:13] 2025-11-27 07:11:10,856 | INFO     | executing command: ls -lF /var/lib/boinc/slots/0
[2025-11-27 08:12:13] 2025-11-27 07:11:10,865 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 08:12:13] 2025-11-27 07:11:10,865 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 08:12:13] 2025-11-27 07:11:10,865 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 08:12:13] 2025-11-27 07:11:10,865 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 08:12:13] 2025-11-27 07:11:10,865 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 08:12:13] 2025-11-27 07:11:10,865 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 08:12:13] 2025-11-27 07:11:10,865 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 08:12:13] 2025-11-27 07:11:10,865 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 08:12:13] 2025-11-27 07:11:10,865 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 08:12:13] 2025-11-27 07:11:10,865 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 08:12:13] 2025-11-27 07:11:10,866 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 08:12:13] 2025-11-27 07:11:10,866 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 08:12:13] 2025-11-27 07:11:10,866 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 08:12:13] 2025-11-27 07:11:10,866 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 08:12:13] 2025-11-27 07:11:10,866 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 08:12:13] 2025-11-27 07:11:10,866 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 08:12:13] 2025-11-27 07:11:10,866 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 08:12:13] 2025-11-27 07:11:10,866 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 08:12:13] 2025-11-27 07:11:10,866 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 08:12:13] 2025-11-27 07:11:10,866 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 08:12:13] 2025-11-27 07:11:10,866 | INFO     | job 6895345551 has completed (purged errors)
[2025-11-27 08:12:13] 2025-11-27 07:11:10,866 | INFO     | overall cleanup function is called
[2025-11-27 08:12:13] 2025-11-27 07:11:11,873 | INFO     | --- collectZombieJob: --- 10, [15812]
[2025-11-27 08:12:13] 2025-11-27 07:11:11,873 | INFO     | zombie collector waiting for pid 15812
[2025-11-27 08:12:13] 2025-11-27 07:11:11,873 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 08:12:13] 2025-11-27 07:11:11,873 | INFO     | collected zombie processes
[2025-11-27 08:12:13] 2025-11-27 07:11:11,874 | INFO     | will attempt to kill all subprocesses of pid=15812
[2025-11-27 08:12:13] 2025-11-27 07:11:11,896 | INFO     | process IDs to be killed: [15812] (in reverse order)
[2025-11-27 08:12:13] 2025-11-27 07:11:11,912 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 08:12:13] 2025-11-27 07:11:11,912 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 08:12:13] 2025-11-27 07:11:11,913 | INFO     | did not find any defunct processes belonging to 15812
[2025-11-27 08:12:13] 2025-11-27 07:11:11,914 | INFO     | did not find any defunct processes belonging to 15812
[2025-11-27 08:12:13] 2025-11-27 07:11:11,915 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 08:12:13] 2025-11-27 07:11:11,915 | INFO     | ready for new job
[2025-11-27 08:12:13] 2025-11-27 07:11:11,915 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 08:12:13] 2025-11-27 07:11:11,917 | INFO     | ***************************************
[2025-11-27 08:12:13] 2025-11-27 07:11:11,917 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 08:12:13] 2025-11-27 07:11:11,917 | INFO     | ***************************************
[2025-11-27 08:12:13] 2025-11-27 07:11:11,917 | INFO     | 
[2025-11-27 08:12:13] 2025-11-27 07:11:11,917 | INFO     | pilot is running in a VM
[2025-11-27 08:12:13] 2025-11-27 07:11:11,917 | INFO     | architecture information:
[2025-11-27 08:12:13] 2025-11-27 07:11:11,917 | INFO     | executing command: cat /etc/os-release
[2025-11-27 08:12:13] 2025-11-27 07:11:11,924 | INFO     | cat /etc/os-release:
[2025-11-27 08:12:13] NAME="CentOS Linux"
[2025-11-27 08:12:13] VERSION="7 (Core)"
[2025-11-27 08:12:13] ID="centos"
[2025-11-27 08:12:13] ID_LIKE="rhel fedora"
[2025-11-27 08:12:13] VERSION_ID="7"
[2025-11-27 08:12:13] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 08:12:13] ANSI_COLOR="0;31"
[2025-11-27 08:12:13] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 08:12:13] HOME_URL="https://www.centos.org/"
[2025-11-27 08:12:13] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 08:12:13] 
[2025-11-27 08:12:13] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 08:12:13] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 08:12:13] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 08:12:13] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 08:12:13] 
[2025-11-27 08:12:13] 2025-11-27 07:11:11,924 | INFO     | ***************************************
[2025-11-27 08:12:13] 2025-11-27 07:11:12,427 | INFO     | executing command: df -mP /var/lib/boinc/slots/0
[2025-11-27 08:12:13] 2025-11-27 07:11:12,436 | INFO     | sufficient remaining disk space (36959158272 B)
[2025-11-27 08:12:13] 2025-11-27 07:11:12,436 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 08:12:13] 2025-11-27 07:11:12,437 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 08:12:13] 2025-11-27 07:11:12,437 | INFO     | update_server=False
[2025-11-27 08:12:13] 2025-11-27 07:11:12,437 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 08:12:13] 2025-11-27 07:11:12,437 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 08:12:13] 2025-11-27 07:11:12,437 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 08:12:13] 2025-11-27 07:11:13,105 | INFO     | all data control threads have been joined
[2025-11-27 08:12:13] 2025-11-27 07:11:13,226 | INFO     | all payload control threads have been joined
[2025-11-27 08:12:13] 2025-11-27 07:11:13,409 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 08:12:13] 2025-11-27 07:11:13,409 | INFO     | aborting loop
[2025-11-27 08:12:13] 2025-11-27 07:11:13,438 | INFO     | [job] retrieve thread has finished
[2025-11-27 08:12:13] 2025-11-27 07:11:13,442 | INFO     | [job] queue monitor thread has finished
[2025-11-27 08:12:13] 2025-11-27 07:11:13,468 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 08:12:13] 2025-11-27 07:11:13,499 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 08:12:13] 2025-11-27 07:11:13,585 | INFO     | [payload] failed_post thread has finished
[2025-11-27 08:12:13] 2025-11-27 07:11:13,806 | INFO     | all job control threads have been joined
[2025-11-27 08:12:13] 2025-11-27 07:11:13,834 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 08:12:13] 2025-11-27 07:11:13,844 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 08:12:13] 2025-11-27 07:11:14,110 | INFO     | [data] control thread has finished
[2025-11-27 08:12:13] 2025-11-27 07:11:14,232 | INFO     | [payload] control thread has finished
[2025-11-27 08:12:13] 2025-11-27 07:11:14,414 | INFO     | [job] job monitor thread has finished
[2025-11-27 08:12:13] 2025-11-27 07:11:14,463 | INFO     | [payload] validate_post thread has finished
[2025-11-27 08:12:13] 2025-11-27 07:11:14,501 | INFO     | [data] copytool_in thread has finished
[2025-11-27 08:12:13] 2025-11-27 07:11:14,812 | INFO     | [job] control thread has finished
[2025-11-27 08:12:13] 2025-11-27 07:11:14,829 | INFO     | [job] validate thread has finished
[2025-11-27 08:12:13] 2025-11-27 07:11:15,849 | INFO     | [data] copytool_out thread has finished
[2025-11-27 08:12:13] 2025-11-27 07:11:16,443 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 08:12:13] 2025-11-27 07:11:22,632 | INFO     | job.realtimelogging is not enabled
[2025-11-27 08:12:13] 2025-11-27 07:11:23,638 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 08:12:13] 2025-11-27 07:11:43,076 | INFO     | PID=9438 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-27 08:12:13] 2025-11-27 07:11:43,077 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 08:12:13] 2025-11-27 07:11:43,077 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 08:12:13] 2025-11-27 07:11:43,077 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 08:12:13] 2025-11-27 07:12:07,672 | INFO     | [monitor] cgroup control has ended
[2025-11-27 08:12:13] 2025-11-27 07:12:08,066 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140052522526528)>', '<ExcThread(monitor, started 140052172633856)>']
[2025-11-27 08:12:13] 2025-11-27 07:12:08,205 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 08:12:13] 2025-11-27 07:12:08,205 | INFO     | [monitor] control thread has ended
[2025-11-27 08:12:13] 2025-11-27 07:12:13,072 | INFO     | all workflow threads have been joined
[2025-11-27 08:12:13] 2025-11-27 07:12:13,073 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 08:12:13] 2025-11-27 07:12:13,073 | INFO     | traces error code: 0
[2025-11-27 08:12:13] 2025-11-27 07:12:13,073 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 08:12:13] 2025-11-27 07:12:13,131 [wrapper] ==== pilot stdout END ====
[2025-11-27 08:12:13] 2025-11-27 07:12:13,133 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 08:12:13] 2025-11-27 07:12:13,135 [wrapper] pilotpid: 9438
[2025-11-27 08:12:13] 2025-11-27 07:12:13,137 [wrapper] Pilot exit status: 0
[2025-11-27 08:12:13] 2025-11-27 07:12:13,146 [wrapper] pandaids: 6895345551
[2025-11-27 08:12:13] 2025-11-27 07:12:13,161 [wrapper] cleanup supervisor_pilot  110402 9439
[2025-11-27 08:12:13] 2025-11-27 07:12:13,163 [wrapper] Test setup, not cleaning
[2025-11-27 08:12:13] 2025-11-27 07:12:13,165 [wrapper] apfmon messages muted
[2025-11-27 08:12:13] 2025-11-27 07:12:13,167 [wrapper] ==== wrapper stdout END ====
[2025-11-27 08:12:13] 2025-11-27 07:12:13,168 [wrapper] ==== wrapper stderr END ====
[2025-11-27 08:12:13]  *** Error codes and diagnostics ***
[2025-11-27 08:12:13]     "exeErrorCode": 0,
[2025-11-27 08:12:13]     "exeErrorDiag": "",
[2025-11-27 08:12:13]     "pilotErrorCode": 0,
[2025-11-27 08:12:13]     "pilotErrorDiag": "",
[2025-11-27 08:12:13]  *** Listing of results directory ***
[2025-11-27 08:12:13] total 1325812
[2025-11-27 08:12:13] -rw-r--r--. 1 boinc boinc    576529 Nov 22 18:43 pilot3.tar.gz
[2025-11-27 08:12:13] -rwx------. 1 boinc boinc     36292 Nov 22 18:44 runpilot2-wrapper.sh
[2025-11-27 08:12:13] -rw-r--r--. 1 boinc boinc      5112 Nov 22 18:44 queuedata.json
[2025-11-27 08:12:13] -rw-r--r--. 1 boinc boinc       100 Nov 26 14:12 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 08:12:13] -rwxr-xr-x. 1 boinc boinc      7986 Nov 26 14:12 run_atlas
[2025-11-27 08:12:13] -rw-r--r--. 1 boinc boinc       105 Nov 26 14:12 job.xml
[2025-11-27 08:12:13] -rw-r--r--. 2 boinc boinc     15847 Nov 26 14:12 start_atlas.sh
[2025-11-27 08:12:13] drwxrwx--x. 2 boinc boinc        68 Nov 26 14:12 shared
[2025-11-27 08:12:13] -rw-r--r--. 2 boinc boinc    590100 Nov 26 14:12 input.tar.gz
[2025-11-27 08:12:13] -rw-r--r--. 2 boinc boinc 410363180 Nov 26 14:12 EVNT.47483658._001104.pool.root.1
[2025-11-27 08:12:13] -rw-r--r--. 1 boinc boinc         0 Nov 26 14:12 boinc_setup_complete
[2025-11-27 08:12:13] -rw-r--r--. 1 boinc boinc         0 Nov 26 14:12 boinc_lockfile
[2025-11-27 08:12:13] -rw-r--r--. 1 boinc boinc      2783 Nov 26 14:12 pandaJob.out
[2025-11-27 08:12:13] -rw-------. 1 boinc boinc    991830 Nov 26 14:13 agis_schedconf.cvmfs.json
[2025-11-27 08:12:13] drwx------. 5 boinc boinc      4096 Nov 26 14:13 pilot3
[2025-11-27 08:12:13] -rw-r--r--. 1 boinc boinc      6577 Nov 27 07:35 init_data.xml
[2025-11-27 08:12:13] -rw-r--r--. 1 boinc boinc       533 Nov 27 08:05 boinc_task_state.xml
[2025-11-27 08:12:13] -rw-------. 1 boinc boinc 921895956 Nov 27 08:10 HITS.47556149._000905.pool.root.1
[2025-11-27 08:12:13] -rw-------. 1 boinc boinc      1001 Nov 27 08:11 memory_monitor_summary.json
[2025-11-27 08:12:13] -rw-------. 1 boinc boinc   1516240 Nov 27 08:11 agis_ddmendpoints.agis.ALL.json
[2025-11-27 08:12:13] -rw-------. 1 boinc boinc   1753703 Nov 27 08:11 log.47556149._000905.job.log.tgz.1
[2025-11-27 08:12:13] -rw-------. 1 boinc boinc      8548 Nov 27 08:11 heartbeat.json
[2025-11-27 08:12:13] -rw-------. 1 boinc boinc        95 Nov 27 08:11 pilot_heartbeat.json
[2025-11-27 08:12:13] -rw-r--r--. 1 boinc boinc      8192 Nov 27 08:12 boinc_mmap_file
[2025-11-27 08:12:13] -rw-r--r--. 1 boinc boinc        29 Nov 27 08:12 wrapper_checkpoint.txt
[2025-11-27 08:12:13] -rw-------. 1 boinc boinc      4879 Nov 27 08:12 pilotlog.txt
[2025-11-27 08:12:13] -rw-------. 1 boinc boinc   8978688 Nov 27 08:12 log.47556149._000905.job.log.1
[2025-11-27 08:12:13] -rw-------. 1 boinc boinc       353 Nov 27 08:12 output.list
[2025-11-27 08:12:13] -rw-r--r--. 1 boinc boinc       620 Nov 27 08:12 runtime_log
[2025-11-27 08:12:13] -rw-------. 1 boinc boinc  10752000 Nov 27 08:12 result.tar.gz
[2025-11-27 08:12:13] -rw-r--r--. 1 boinc boinc      8799 Nov 27 08:12 runtime_log.err
[2025-11-27 08:12:13] -rw-------. 1 boinc boinc       659 Nov 27 08:12 PmkKDmPq6g8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmgJKKDmQ4SvPn.diag
[2025-11-27 08:12:13] -rw-r--r--. 1 boinc boinc     20829 Nov 27 08:12 stderr.txt
[2025-11-27 08:12:13] HITS file was successfully produced:
[2025-11-27 08:12:13] -rw-------. 1 boinc boinc 921895956 Nov 27 08:10 shared/HITS.pool.root.1
[2025-11-27 08:12:13]  *** Contents of shared directory: ***
[2025-11-27 08:12:13] total 1312136
[2025-11-27 08:12:13] -rw-r--r--. 2 boinc boinc     15847 Nov 26 14:12 start_atlas.sh
[2025-11-27 08:12:13] -rw-r--r--. 2 boinc boinc    590100 Nov 26 14:12 input.tar.gz
[2025-11-27 08:12:13] -rw-r--r--. 2 boinc boinc 410363180 Nov 26 14:12 ATLAS.root_0
[2025-11-27 08:12:13] -rw-------. 1 boinc boinc 921895956 Nov 27 08:10 HITS.pool.root.1
[2025-11-27 08:12:13] -rw-------. 1 boinc boinc  10752000 Nov 27 08:12 result.tar.gz
08:12:15 (5166): run_atlas exited; CPU time 247411.428598
08:12:15 (5166): called boinc_finish(0)

</stderr_txt>
]]>

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