Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-11-26 15:52:57 (20492): vboxwrapper version 26210
2025-11-26 15:52:57 (20492): BOINC client version: 8.0.2
2025-11-26 15:52:57 (20492): Detected: VirtualBox VboxManage Interface (Version: 6.1.50)
2025-11-26 15:52:57 (20492): Successfully copied 'init_data.xml' to the shared directory.
2025-11-26 15:52:58 (20492): Create VM. (boinc_97a51de764bf45aa, slot#5)
2025-11-26 15:52:58 (20492): Setting Memory Size for VM. (4700MB)
2025-11-26 15:52:58 (20492): Setting CPU Count for VM. (7)
2025-11-26 15:52:59 (20492): Setting Chipset Options for VM.
2025-11-26 15:52:59 (20492): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-11-26 15:52:59 (20492): Setting Boot Options for VM.
2025-11-26 15:53:00 (20492): Setting Network Configuration for NAT. (Driver: virtio)
2025-11-26 15:53:00 (20492): Enabling VM Network Access.
2025-11-26 15:53:00 (20492): Disabling USB Support for VM.
2025-11-26 15:53:00 (20492): Disabling COM Port Support for VM.
2025-11-26 15:53:01 (20492): Disabling LPT Port Support for VM.
2025-11-26 15:53:01 (20492): Disabling Audio Support for VM.
2025-11-26 15:53:01 (20492): Disabling Clipboard Support for VM.
2025-11-26 15:53:01 (20492): Disabling Drag and Drop Support for VM.
2025-11-26 15:53:02 (20492): Adding storage controller(s) to VM.
2025-11-26 15:53:02 (20492): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-11-26 15:53:03 (20492): Adding VirtualBox Guest Additions to VM.
2025-11-26 15:53:03 (20492): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-11-26 15:53:03 (20492): forwarding host port 55239 to guest port 80
2025-11-26 15:53:03 (20492): Enabling remote desktop for VM.
2025-11-26 15:53:04 (20492): Required extension pack not installed, remote desktop not enabled.
2025-11-26 15:53:04 (20492): Enabling shared directory for VM.
2025-11-26 15:53:04 (20492): Starting VM using VBoxManage interface. (boinc_97a51de764bf45aa, slot#5)
2025-11-26 15:53:09 (20492): Successfully started VM. (PID = '6436')
2025-11-26 15:53:09 (20492): Reporting VM Process ID to BOINC.
2025-11-26 15:53:09 (20492): Guest Log: BIOS: VirtualBox 6.1.50
2025-11-26 15:53:09 (20492): Guest Log: CPUID EDX: 0x178bfbff
2025-11-26 15:53:09 (20492): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-11-26 15:53:09 (20492): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-11-26 15:53:09 (20492): VM state change detected. (old = 'poweredoff', new = 'running')
2025-11-26 15:53:09 (20492): Detected: Web Application Enabled (http://localhost:55239)
2025-11-26 15:53:09 (20492): Preference change detected
2025-11-26 15:53:09 (20492): Setting CPU throttle for VM. (100%)
2025-11-26 15:53:09 (20492): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-11-26 15:53:11 (20492): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-11-26 15:53:11 (20492): Guest Log: BIOS: Booting from Hard Disk...
2025-11-26 15:53:14 (20492): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-11-26 15:53:14 (20492): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-11-26 15:53:14 (20492): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-11-26 15:53:14 (20492): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-11-26 15:53:14 (20492): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-11-26 15:53:14 (20492): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-11-26 15:53:14 (20492): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-11-26 15:53:14 (20492): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-11-26 15:53:14 (20492): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-11-26 15:53:14 (20492): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-11-26 15:53:14 (20492): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-11-26 15:53:14 (20492): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-11-26 15:53:14 (20492): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-11-26 15:53:14 (20492): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-11-26 15:53:14 (20492): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-11-26 15:53:14 (20492): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-11-26 15:53:14 (20492): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-11-26 15:53:14 (20492): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-11-26 15:53:14 (20492): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-11-26 15:53:14 (20492): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-11-26 15:53:14 (20492): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-11-26 15:53:14 (20492): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-11-26 15:53:14 (20492): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-11-26 15:53:14 (20492): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-11-26 15:53:14 (20492): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-11-26 15:53:14 (20492): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-11-26 15:53:14 (20492): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-11-26 15:53:14 (20492): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-11-26 15:53:14 (20492): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-11-26 15:53:14 (20492): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-11-26 15:53:14 (20492): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-11-26 15:53:14 (20492): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-11-26 15:54:20 (20492): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-11-26 15:54:20 (20492): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0000000 (size 0x400000)
2025-11-26 15:54:26 (20492): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-11-26 15:54:26 (20492): Guest Log: 00:00:00.000218 main     Log opened 2025-11-26T15:54:24.483038000Z
2025-11-26 15:54:26 (20492): Guest Log: 00:00:00.000337 main     OS Product: Linux
2025-11-26 15:54:26 (20492): Guest Log: 00:00:00.000373 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-11-26 15:54:26 (20492): Guest Log: 00:00:00.000401 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-11-26 15:54:26 (20492): Guest Log: 00:00:00.000428 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-11-26 15:54:26 (20492): Guest Log: 00:00:00.000428 main     Process ID: 1352
2025-11-26 15:54:26 (20492): Guest Log: 00:00:00.000429 main     Package type: LINUX_64BITS_GENERIC
2025-11-26 15:54:26 (20492): Guest Log: 00:00:00.001378 main     5.2.32 r132073 started. Verbose level = 0
2025-11-26 15:54:26 (20492): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-11-26 15:54:26 (20492): Guest Log: [INFO] Mounting shared directory
2025-11-26 15:54:26 (20492): Guest Log: [INFO] Checking for init_data.xml
2025-11-26 15:54:29 (20492): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-11-26 15:54:29 (20492): Guest Log: [INFO] Detected branch: prod
2025-11-26 15:54:30 (20492): Guest Log: This is the prod version of the ATLAS job wrapper
2025-11-26 15:54:30 (20492): Guest Log: Copying input files
2025-11-26 15:54:32 (20492): Guest Log: Copied input files into RunAtlas.
2025-11-26 15:54:32 (20492): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-11-26 15:54:32 (20492): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-11-26 15:54:32 (20492): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-11-26 15:54:32 (20492): Guest Log: Further information can be found at the LHC@home message board.
2025-11-26 15:54:36 (20492): Guest Log: 00:00:10.034201 timesync vgsvcTimeSyncWorker: Radical guest time change: -3 594 627 896 000ns (GuestNow=1 764 168 869 857 531 000 ns GuestLast=1 764 172 464 485 427 000 ns fSetTimeLastLoop=true )
2025-11-26 15:54:40 (20492): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-11-26 15:54:40 (20492): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-11-26 15:54:40 (20492): Guest Log: 2.6.3.0 1629 0 32204 153324 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1sampa-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-11-26 15:54:41 (20492): Guest Log: copied the webapp to /var/www
2025-11-26 15:54:41 (20492): Guest Log: ATHENA_PROC_NUMBER=7
2025-11-26 15:54:41 (20492): Guest Log: ATHENA_CORE_NUMBER=7
2025-11-26 15:54:42 (20492): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-11-26 15:54:42 (20492): Guest Log:  *** Starting ATLAS job. (PandaID=6893877102 taskID=47523449) ***
2025-11-26 17:33:15 (20492): Status Report: Elapsed Time: '6000.000000'
2025-11-26 17:33:15 (20492): Status Report: CPU Time: '39275.781250'
2025-11-26 19:13:21 (20492): Status Report: Elapsed Time: '12000.000000'
2025-11-26 19:13:21 (20492): Status Report: CPU Time: '81186.031250'
2025-11-26 20:53:27 (20492): Status Report: Elapsed Time: '18000.000000'
2025-11-26 20:53:27 (20492): Status Report: CPU Time: '123116.296875'
2025-11-26 22:33:33 (20492): Status Report: Elapsed Time: '24000.000000'
2025-11-26 22:33:33 (20492): Status Report: CPU Time: '164979.171875'
2025-11-26 23:18:13 (20492): Guest Log:  *** Job finished ***
2025-11-26 23:18:13 (20492): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-11-26 23:18:13 (20492): Guest Log: 2025-11-26 22:17:38,327 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-11-26 23:18:13 (20492): Guest Log: 2025-11-26 22:17:38,327 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-11-26 23:18:13 (20492): Guest Log: 2025-11-26 22:17:50,775 | INFO     | [monitor] cgroup control has ended
2025-11-26 23:18:13 (20492): Guest Log: 2025-11-26 22:17:52,477 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139997374175040)>', '<ExcThread(monitor, started 139996765857536)>']
2025-11-26 23:18:13 (20492): Guest Log: 2025-11-26 22:17:52,540 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-11-26 23:18:13 (20492): Guest Log: 2025-11-26 22:17:52,540 | INFO     | [monitor] control thread has ended
2025-11-26 23:18:13 (20492): Guest Log: 2025-11-26 22:17:57,527 | INFO     | all workflow threads have been joined
2025-11-26 23:18:13 (20492): Guest Log: 2025-11-26 22:17:57,527 | INFO     | end of generic workflow (traces error code: 0)
2025-11-26 23:18:13 (20492): Guest Log: 2025-11-26 22:17:57,527 | INFO     | traces error code: 0
2025-11-26 23:18:13 (20492): Guest Log: 2025-11-26 22:17:57,527 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-11-26 23:18:13 (20492): Guest Log: 2025-11-26 22:17:57,648 [wrapper] ==== pilot stdout END ====
2025-11-26 23:18:13 (20492): Guest Log: 2025-11-26 22:17:57,655 [wrapper] ==== wrapper stdout RESUME ====
2025-11-26 23:18:13 (20492): Guest Log: 2025-11-26 22:17:57,662 [wrapper] pilotpid: 6079
2025-11-26 23:18:13 (20492): Guest Log: 2025-11-26 22:17:57,668 [wrapper] Pilot exit status: 0
2025-11-26 23:18:13 (20492): Guest Log: 2025-11-26 22:17:57,687 [wrapper] pandaids: 6893877102
2025-11-26 23:18:13 (20492): Guest Log: 2025-11-26 22:17:57,721 [wrapper] cleanup supervisor_pilot  3849 6080
2025-11-26 23:18:13 (20492): Guest Log: 2025-11-26 22:17:57,727 [wrapper] Test setup, not cleaning
2025-11-26 23:18:13 (20492): Guest Log: 2025-11-26 22:17:57,734 [wrapper] apfmon messages muted
2025-11-26 23:18:13 (20492): Guest Log: 2025-11-26 22:17:57,740 [wrapper] ==== wrapper stdout END ====
2025-11-26 23:18:13 (20492): Guest Log: 2025-11-26 22:17:57,747 [wrapper] ==== wrapper stderr END ====
2025-11-26 23:18:13 (20492): Guest Log:  *** Error codes and diagnostics ***
2025-11-26 23:18:13 (20492): Guest Log:     "exeErrorCode": 0,
2025-11-26 23:18:13 (20492): Guest Log:     "exeErrorDiag": "",
2025-11-26 23:18:13 (20492): Guest Log:     "pilotErrorCode": 0,
2025-11-26 23:18:13 (20492): Guest Log:     "pilotErrorDiag": "",
2025-11-26 23:18:13 (20492): Guest Log:  *** Listing of results directory ***
2025-11-26 23:18:13 (20492): Guest Log: total 904880
2025-11-26 23:18:13 (20492): Guest Log: -rw-r--r--. 1 atlas atlas    598293 Nov  6 08:41 pilot3.tar.gz
2025-11-26 23:18:13 (20492): Guest Log: -rwx------. 1 atlas atlas     36292 Nov 20 18:06 runpilot2-wrapper.sh
2025-11-26 23:18:13 (20492): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Nov 20 18:06 queuedata.json
2025-11-26 23:18:13 (20492): Guest Log: -rwxr-xr-x. 1 atlas atlas      8986 Nov 26 14:54 init_data.xml
2025-11-26 23:18:13 (20492): Guest Log: -rwxr-xr-x. 1 atlas atlas     15847 Nov 26 14:54 start_atlas.sh
2025-11-26 23:18:13 (20492): Guest Log: -rwxr-xr-x. 1 atlas atlas    611281 Nov 26 14:54 input.tar.gz
2025-11-26 23:18:13 (20492): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Nov 26 14:54 EVNT.47493127._000787.pool.root.1 -> /data/./ATLAS.root_0
2025-11-26 23:18:13 (20492): Guest Log: -rw-r--r--. 1 atlas atlas      2784 Nov 26 14:54 pandaJob.out
2025-11-26 23:18:13 (20492): Guest Log: -rw-------. 1 atlas atlas    992360 Nov 26 14:55 agis_schedconf.cvmfs.json
2025-11-26 23:18:13 (20492): Guest Log: drwx------. 7 atlas atlas      4096 Nov 26 14:55 pilot3
2025-11-26 23:18:13 (20492): Guest Log: -rw-------. 1 atlas atlas 912384125 Nov 26 22:14 HITS.47523449._007869.pool.root.1
2025-11-26 23:18:13 (20492): Guest Log: -rw-------. 1 atlas atlas      1038 Nov 26 22:15 memory_monitor_summary.json
2025-11-26 23:18:13 (20492): Guest Log: -rw-------. 1 atlas atlas   1516240 Nov 26 22:15 agis_ddmendpoints.agis.ALL.json
2025-11-26 23:18:13 (20492): Guest Log: -rw-------. 1 atlas atlas   1620233 Nov 26 22:15 log.47523449._007869.job.log.tgz.1
2025-11-26 23:18:13 (20492): Guest Log: -rw-------. 1 atlas atlas        95 Nov 26 22:16 pilot_heartbeat.json
2025-11-26 23:18:13 (20492): Guest Log: -rw-------. 1 atlas atlas      8638 Nov 26 22:17 heartbeat.json
2025-11-26 23:18:13 (20492): Guest Log: -rw-------. 1 atlas atlas      4805 Nov 26 22:17 pilotlog.txt
2025-11-26 23:18:13 (20492): Guest Log: -rw-------. 1 atlas atlas   3537378 Nov 26 22:17 log.47523449._007869.job.log.1
2025-11-26 23:18:13 (20492): Guest Log: -rw-------. 1 atlas atlas       353 Nov 26 22:17 output.list
2025-11-26 23:18:13 (20492): Guest Log: -rw-r--r--. 1 atlas atlas       620 Nov 26 22:17 runtime_log
2025-11-26 23:18:13 (20492): Guest Log: -rw-------. 1 atlas atlas   5181440 Nov 26 22:17 result.tar.gz
2025-11-26 23:18:13 (20492): Guest Log: -rw-------. 1 atlas atlas       658 Nov 26 22:17 TmnKDmdEOg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm7NIKDmorwPkm.diag
2025-11-26 23:18:13 (20492): Guest Log: -rw-r--r--. 1 atlas atlas      8744 Nov 26 22:17 runtime_log.err
2025-11-26 23:18:13 (20492): Guest Log: Looking for outputfile HITS.47523449._007869.pool.root.1
2025-11-26 23:18:13 (20492): Guest Log: HITS file was successfully produced
2025-11-26 23:18:13 (20492): Guest Log: -rw-------. 1 atlas atlas 912384125 Nov 26 22:14 /home/atlas/RunAtlas/HITS.47523449._007869.pool.root.1
2025-11-26 23:18:17 (20492): Guest Log: Successfully finished the ATLAS job!
2025-11-26 23:18:17 (20492): Guest Log: Copying the results back to the shared directory!
2025-11-26 23:18:18 (20492): Guest Log:  *** Contents of shared directory: ***
2025-11-26 23:18:18 (20492): Guest Log: total 1295572
2025-11-26 23:18:18 (20492): Guest Log: -rwxrwxrwx. 1 root root 408450817 Nov 26 14:52 ATLAS.root_0
2025-11-26 23:18:18 (20492): Guest Log: -rwxrwxrwx. 1 root root 912384125 Nov 26  2025 HITS.pool.root.1
2025-11-26 23:18:18 (20492): Guest Log: -rwxrwxrwx. 1 root root      8986 Nov 26 14:52 init_data.xml
2025-11-26 23:18:18 (20492): Guest Log: -rwxrwxrwx. 1 root root    611281 Nov 26 13:07 input.tar.gz
2025-11-26 23:18:18 (20492): Guest Log: -rwxrwxrwx. 1 root root   5181440 Nov 26  2025 result.tar.gz
2025-11-26 23:18:18 (20492): Guest Log: -rwxrwxrwx. 1 root root     15847 Nov 26 13:07 start_atlas.sh
2025-11-26 23:18:18 (20492): Guest Log:  *** Success! Shutting down the machine. ***
2025-11-26 23:18:18 (20492): VM Completion File Detected.
2025-11-26 23:18:18 (20492): Powering off VM.
2025-11-26 23:18:19 (20492): Successfully stopped VM.
2025-11-26 23:18:19 (20492): Deregistering VM. (boinc_97a51de764bf45aa, slot#5)
2025-11-26 23:18:19 (20492): Removing network bandwidth throttle group from VM.
2025-11-26 23:18:20 (20492): Removing VM from VirtualBox.
2025-11-26 23:18:25 (20492): called boinc_finish(0)

</stderr_txt>
]]>

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