Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
11:50:50 (1671479): wrapper (7.7.26015): starting
11:50:50 (1671479): wrapper: running run_atlas (--nthreads 4)
[2025-12-03 11:50:50] Arguments: --nthreads 4
[2025-12-03 11:50:50] Threads: 4
[2025-12-03 11:50:50] Checking for CVMFS
[2025-12-03 11:50:50] No cvmfs_config command found, will try listing directly
[2025-12-03 11:50:50] CVMFS is ok
[2025-12-03 11:50:50] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-03 11:50:50] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-03 11:50:50] Further information can be found at the LHC@home message board.
[2025-12-03 11:50:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-03 11:50:50] Checking for apptainer binary...
[2025-12-03 11:50:50] which: no apptainer in ((null))
[2025-12-03 11:50:50] apptainer is not installed, using version from CVMFS
[2025-12-03 11:50:50] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-03 11:50:50] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot108/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut13.grid.cesnet.cz
[2025-12-03 11:50:50] apptainer works
[2025-12-03 11:50:50] Set ATHENA_PROC_NUMBER=4
[2025-12-03 11:50:50] Set ATHENA_CORE_NUMBER=4
[2025-12-03 11:50:50] Starting ATLAS job with PandaID=6896450014
[2025-12-03 11:50:50] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot108/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-04 04:00:23]  *** The last 200 lines of the pilot log: ***
[2025-12-04 04:00:23] 2025-12-04 02:54:49,724 | INFO     | monitor loop #3897: job 0:6896450014 is in state 'finished'
[2025-12-04 04:00:23] 2025-12-04 02:54:49,724 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-04 04:00:23] 2025-12-04 02:54:50,970 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-04 04:00:23] 2025-12-04 02:54:50,990 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 2731.1433437499995
[2025-12-04 04:00:23] 2025-12-04 02:54:51,016 | INFO     | using path: /scratch/boinc/var/slot108/slots/0/PanDA_Pilot-6896450014/memory_monitor_summary.json (trf name=prmon)
[2025-12-04 04:00:23] 2025-12-04 02:54:51,016 | INFO     | extracted standard info from prmon json
[2025-12-04 04:00:23] 2025-12-04 02:54:51,016 | INFO     | extracted standard memory fields from prmon json
[2025-12-04 04:00:23] 2025-12-04 02:54:51,016 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-04 04:00:23] 2025-12-04 02:54:51,031 | INFO     | fitting pss+swap vs Time
[2025-12-04 04:00:23] 2025-12-04 02:54:51,033 | INFO     | sum of square deviations: 264181780704.99796
[2025-12-04 04:00:23] 2025-12-04 02:54:51,052 | INFO     | sum of deviations: 717783222985.3916
[2025-12-04 04:00:23] 2025-12-04 02:54:51,052 | INFO     | mean x: 1764787983.5010548
[2025-12-04 04:00:23] 2025-12-04 02:54:51,052 | INFO     | mean y: 2273236.108649789
[2025-12-04 04:00:23] 2025-12-04 02:54:51,052 | INFO     | intersect: -4792664565.063164
[2025-12-04 04:00:23] 2025-12-04 02:54:51,053 | INFO     | chi2: 3.9619000721060145
[2025-12-04 04:00:23] 2025-12-04 02:54:51,055 | INFO     | sum of square deviations: 260023693745.00012
[2025-12-04 04:00:23] 2025-12-04 02:54:51,072 | INFO     | sum of deviations: 915635737692.1442
[2025-12-04 04:00:23] 2025-12-04 02:54:51,072 | INFO     | mean x: 1764787831.0010605
[2025-12-04 04:00:23] 2025-12-04 02:54:51,073 | INFO     | mean y: 2280485.854718982
[2025-12-04 04:00:23] 2025-12-04 02:54:51,073 | INFO     | intersect: -6212163991.245347
[2025-12-04 04:00:23] 2025-12-04 02:54:51,074 | INFO     | chi2: 1.8248648071715807
[2025-12-04 04:00:23] 2025-12-04 02:54:51,074 | INFO     | current chi2=1.8248648071715807 (change=53.93965587320976 %)
[2025-12-04 04:00:23] 2025-12-04 02:54:51,075 | INFO     | sum of square deviations: 255909468072.49792
[2025-12-04 04:00:23] 2025-12-04 02:54:51,094 | INFO     | sum of deviations: 901888263422.7445
[2025-12-04 04:00:23] 2025-12-04 02:54:51,094 | INFO     | mean x: 1764787678.5010662
[2025-12-04 04:00:23] 2025-12-04 02:54:51,094 | INFO     | mean y: 2279976.2558635394
[2025-12-04 04:00:23] 2025-12-04 02:54:51,094 | INFO     | intersect: -6217268314.244584
[2025-12-04 04:00:23] 2025-12-04 02:54:51,095 | INFO     | chi2: 1.8249021547916005
[2025-12-04 04:00:23] 2025-12-04 02:54:51,095 | INFO     | current chi2=1.8249021547916005 (change=-0.0020465965409026364 %)
[2025-12-04 04:00:23] 2025-12-04 02:54:51,096 | INFO     | right removable region: 937
[2025-12-04 04:00:23] 2025-12-04 02:54:51,097 | INFO     | sum of square deviations: 260023693135.00012
[2025-12-04 04:00:23] 2025-12-04 02:54:51,117 | INFO     | sum of deviations: 555697928952.1759
[2025-12-04 04:00:23] 2025-12-04 02:54:51,117 | INFO     | mean x: 1764788136.0010605
[2025-12-04 04:00:23] 2025-12-04 02:54:51,117 | INFO     | mean y: 2279168.8229056206
[2025-12-04 04:00:23] 2025-12-04 02:54:51,118 | INFO     | intersect: -3769258341.4377546
[2025-12-04 04:00:23] 2025-12-04 02:54:51,118 | INFO     | chi2: 2.239246524394538
[2025-12-04 04:00:23] 2025-12-04 02:54:51,119 | INFO     | current chi2=2.239246524394538 (change=43.480489572160536 %)
[2025-12-04 04:00:23] 2025-12-04 02:54:51,120 | INFO     | sum of square deviations: 255909466852.49792
[2025-12-04 04:00:23] 2025-12-04 02:54:51,138 | INFO     | sum of deviations: 546676535833.44495
[2025-12-04 04:00:23] 2025-12-04 02:54:51,138 | INFO     | mean x: 1764788288.5010662
[2025-12-04 04:00:23] 2025-12-04 02:54:51,139 | INFO     | mean y: 2279502.554371002
[2025-12-04 04:00:23] 2025-12-04 02:54:51,139 | INFO     | intersect: -3767680084.7291822
[2025-12-04 04:00:23] 2025-12-04 02:54:51,140 | INFO     | chi2: 2.237478622542442
[2025-12-04 04:00:23] 2025-12-04 02:54:51,140 | INFO     | current chi2=2.237478622542442 (change=0.07895074672826408 %)
[2025-12-04 04:00:23] 2025-12-04 02:54:51,140 | INFO     | left removable region: 20
[2025-12-04 04:00:23] 2025-12-04 02:54:51,141 | INFO     | sum of square deviations: 239103434596.99908
[2025-12-04 04:00:23] 2025-12-04 02:54:51,159 | INFO     | sum of deviations: 701600505272.9742
[2025-12-04 04:00:23] 2025-12-04 02:54:51,160 | INFO     | mean x: 1764788258.0010905
[2025-12-04 04:00:23] 2025-12-04 02:54:51,160 | INFO     | mean y: 2287315.0250817887
[2025-12-04 04:00:23] 2025-12-04 02:54:51,160 | INFO     | intersect: -5176125682.681464
[2025-12-04 04:00:23] 2025-12-04 02:54:51,161 | INFO     | chi2: 0.07200185629127724
[2025-12-04 04:00:23] 2025-12-04 02:54:51,161 | INFO     | current memory leak: 2.93 B/s (using 917 data points, chi2=0.07)
[2025-12-04 04:00:23] 2025-12-04 02:54:51,162 | INFO     | could have reported an average CPU frequency of 2691 MHz (35 samples)
[2025-12-04 04:00:23] 2025-12-04 02:54:51,162 | INFO     | ..............................
[2025-12-04 04:00:23] 2025-12-04 02:54:51,162 | INFO     | . Timing measurements:
[2025-12-04 04:00:23] 2025-12-04 02:54:51,162 | INFO     | . get job = 0 s
[2025-12-04 04:00:23] 2025-12-04 02:54:51,162 | INFO     | . initial setup = 1 s
[2025-12-04 04:00:23] 2025-12-04 02:54:51,162 | INFO     | . payload setup = 9 s
[2025-12-04 04:00:23] 2025-12-04 02:54:51,163 | INFO     | . stage-in = 0 s
[2025-12-04 04:00:23] 2025-12-04 02:54:51,163 | INFO     | . payload execution = 57784 s
[2025-12-04 04:00:23] 2025-12-04 02:54:51,163 | INFO     | . stage-out = 2 s
[2025-12-04 04:00:23] 2025-12-04 02:54:51,163 | INFO     | . log creation = 0 s
[2025-12-04 04:00:23] 2025-12-04 02:54:51,163 | INFO     | ..............................
[2025-12-04 04:00:23] 2025-12-04 02:54:51,258 | INFO     | 
[2025-12-04 04:00:23] 2025-12-04 02:54:51,259 | INFO     | job summary report
[2025-12-04 04:00:23] 2025-12-04 02:54:51,259 | INFO     | --------------------------------------------------
[2025-12-04 04:00:23] 2025-12-04 02:54:51,259 | INFO     | PanDA job id: 6896450014
[2025-12-04 04:00:23] 2025-12-04 02:54:51,259 | INFO     | task id: 47556149
[2025-12-04 04:00:23] 2025-12-04 02:54:51,259 | INFO     | errors: (none)
[2025-12-04 04:00:23] 2025-12-04 02:54:51,259 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-04 04:00:23] 2025-12-04 02:54:51,259 | INFO     | pilot state: finished 
[2025-12-04 04:00:23] 2025-12-04 02:54:51,259 | INFO     | transexitcode: 0
[2025-12-04 04:00:23] 2025-12-04 02:54:51,259 | INFO     | exeerrorcode: 0
[2025-12-04 04:00:23] 2025-12-04 02:54:51,259 | INFO     | exeerrordiag: 
[2025-12-04 04:00:23] 2025-12-04 02:54:51,260 | INFO     | exitcode: 0
[2025-12-04 04:00:23] 2025-12-04 02:54:51,260 | INFO     | exitmsg: OK
[2025-12-04 04:00:23] 2025-12-04 02:54:51,260 | INFO     | cpuconsumptiontime: 228507 s
[2025-12-04 04:00:23] 2025-12-04 02:54:51,260 | INFO     | nevents: 1000
[2025-12-04 04:00:23] 2025-12-04 02:54:51,260 | INFO     | neventsw: 0
[2025-12-04 04:00:23] 2025-12-04 02:54:51,260 | INFO     | pid: 1682985
[2025-12-04 04:00:23] 2025-12-04 02:54:51,260 | INFO     | pgrp: 1682985
[2025-12-04 04:00:23] 2025-12-04 02:54:51,260 | INFO     | corecount: 4
[2025-12-04 04:00:23] 2025-12-04 02:54:51,260 | INFO     | event service: False
[2025-12-04 04:00:23] 2025-12-04 02:54:51,260 | INFO     | sizes: {0: 2284326, 7: 2284588, 11: 2284616, 57796: 2337812, 57799: 2346830, 57801: 2346886, 57807: 2347260}
[2025-12-04 04:00:23] 2025-12-04 02:54:51,260 | INFO     | --------------------------------------------------
[2025-12-04 04:00:23] 2025-12-04 02:54:51,260 | INFO     | 
[2025-12-04 04:00:23] 2025-12-04 02:54:51,261 | INFO     | executing command: ls -lF /scratch/boinc/var/slot108/slots/0
[2025-12-04 04:00:23] 2025-12-04 02:54:51,291 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-04 04:00:23] 2025-12-04 02:54:51,291 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-04 04:00:23] 2025-12-04 02:54:51,291 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-04 04:00:23] 2025-12-04 02:54:51,291 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-04 04:00:23] 2025-12-04 02:54:51,291 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-04 04:00:23] 2025-12-04 02:54:51,291 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-04 04:00:23] 2025-12-04 02:54:51,292 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-04 04:00:23] 2025-12-04 02:54:51,292 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-04 04:00:23] 2025-12-04 02:54:51,292 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-04 04:00:23] 2025-12-04 02:54:51,292 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-04 04:00:23] 2025-12-04 02:54:51,292 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-04 04:00:23] 2025-12-04 02:54:51,292 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-04 04:00:23] 2025-12-04 02:54:51,292 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-04 04:00:23] 2025-12-04 02:54:51,293 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-04 04:00:23] 2025-12-04 02:54:51,293 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-04 04:00:23] 2025-12-04 02:54:51,293 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-04 04:00:23] 2025-12-04 02:54:51,293 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-04 04:00:23] 2025-12-04 02:54:51,293 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-04 04:00:23] 2025-12-04 02:54:51,293 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-04 04:00:23] 2025-12-04 02:54:51,293 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-04 04:00:23] 2025-12-04 02:54:51,293 | INFO     | job 6896450014 has completed (purged errors)
[2025-12-04 04:00:23] 2025-12-04 02:54:51,293 | INFO     | overall cleanup function is called
[2025-12-04 04:00:23] 2025-12-04 02:54:52,310 | INFO     | --- collectZombieJob: --- 10, [1682985]
[2025-12-04 04:00:23] 2025-12-04 02:54:52,310 | INFO     | zombie collector waiting for pid 1682985
[2025-12-04 04:00:23] 2025-12-04 02:54:52,310 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-04 04:00:23] 2025-12-04 02:54:52,311 | INFO     | collected zombie processes
[2025-12-04 04:00:23] 2025-12-04 02:54:52,311 | INFO     | will attempt to kill all subprocesses of pid=1682985
[2025-12-04 04:00:23] 2025-12-04 02:54:53,040 | INFO     | process IDs to be killed: [1682985] (in reverse order)
[2025-12-04 04:00:23] 2025-12-04 02:54:53,304 | WARNING  | found no corresponding commands to process id(s)
[2025-12-04 04:00:23] 2025-12-04 02:54:53,304 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-04 04:00:23] 2025-12-04 02:54:53,333 | INFO     | did not find any defunct processes belonging to 1682985
[2025-12-04 04:00:23] 2025-12-04 02:54:53,358 | INFO     | did not find any defunct processes belonging to 1682985
[2025-12-04 04:00:23] 2025-12-04 02:54:53,360 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-04 04:00:23] 2025-12-04 02:54:53,360 | INFO     | ready for new job
[2025-12-04 04:00:23] 2025-12-04 02:54:53,360 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-04 04:00:23] 2025-12-04 02:54:53,367 | INFO     | ***************************************
[2025-12-04 04:00:23] 2025-12-04 02:54:53,367 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-04 04:00:23] 2025-12-04 02:54:53,367 | INFO     | ***************************************
[2025-12-04 04:00:23] 2025-12-04 02:54:53,367 | INFO     | 
[2025-12-04 04:00:23] 2025-12-04 02:54:53,375 | INFO     | architecture information:
[2025-12-04 04:00:23] 2025-12-04 02:54:53,376 | INFO     | executing command: cat /etc/os-release
[2025-12-04 04:00:23] 2025-12-04 02:54:53,395 | INFO     | cat /etc/os-release:
[2025-12-04 04:00:23] NAME="CentOS Linux"
[2025-12-04 04:00:23] VERSION="7 (Core)"
[2025-12-04 04:00:23] ID="centos"
[2025-12-04 04:00:23] ID_LIKE="rhel fedora"
[2025-12-04 04:00:23] VERSION_ID="7"
[2025-12-04 04:00:23] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-04 04:00:23] ANSI_COLOR="0;31"
[2025-12-04 04:00:23] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-04 04:00:23] HOME_URL="https://www.centos.org/"
[2025-12-04 04:00:23] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-04 04:00:23] 
[2025-12-04 04:00:23] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-04 04:00:23] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-04 04:00:23] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-04 04:00:23] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-04 04:00:23] 
[2025-12-04 04:00:23] 2025-12-04 02:54:53,396 | INFO     | ***************************************
[2025-12-04 04:00:23] 2025-12-04 02:54:53,899 | INFO     | executing command: df -mP /scratch/boinc/var/slot108/slots/0
[2025-12-04 04:00:23] 2025-12-04 02:54:53,921 | INFO     | sufficient remaining disk space (3219321257984 B)
[2025-12-04 04:00:23] 2025-12-04 02:54:53,922 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-04 04:00:23] 2025-12-04 02:54:53,922 | INFO     | current server update state: UPDATING_FINAL
[2025-12-04 04:00:23] 2025-12-04 02:54:53,922 | INFO     | update_server=False
[2025-12-04 04:00:23] 2025-12-04 02:54:53,922 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-04 04:00:23] 2025-12-04 02:54:53,923 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-04 04:00:23] 2025-12-04 02:54:53,923 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-04 04:00:23] 2025-12-04 02:54:53,923 | INFO     | aborting loop
[2025-12-04 04:00:23] 2025-12-04 02:54:54,427 | INFO     | all data control threads have been joined
[2025-12-04 04:00:23] 2025-12-04 02:54:54,900 | INFO     | all job control threads have been joined
[2025-12-04 04:00:23] 2025-12-04 02:54:54,926 | INFO     | [job] job monitor thread has finished
[2025-12-04 04:00:23] 2025-12-04 02:54:54,927 | INFO     | [job] retrieve thread has finished
[2025-12-04 04:00:23] 2025-12-04 02:54:54,951 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-04 04:00:23] 2025-12-04 02:54:55,010 | INFO     | all payload control threads have been joined
[2025-12-04 04:00:23] 2025-12-04 02:54:55,430 | INFO     | [data] control thread has finished
[2025-12-04 04:00:23] 2025-12-04 02:54:55,571 | INFO     | [job] validate thread has finished
[2025-12-04 04:00:23] 2025-12-04 02:54:55,678 | INFO     | [payload] validate_post thread has finished
[2025-12-04 04:00:23] 2025-12-04 02:54:55,708 | INFO     | [job] create_data_payload thread has finished
[2025-12-04 04:00:23] 2025-12-04 02:54:55,711 | INFO     | [payload] validate_pre thread has finished
[2025-12-04 04:00:23] 2025-12-04 02:54:55,904 | INFO     | [job] control thread has finished
[2025-12-04 04:00:23] 2025-12-04 02:54:55,929 | INFO     | [data] copytool_out thread has finished
[2025-12-04 04:00:23] 2025-12-04 02:54:55,949 | INFO     | [data] copytool_in thread has finished
[2025-12-04 04:00:23] 2025-12-04 02:54:56,016 | INFO     | [payload] control thread has finished
[2025-12-04 04:00:23] 2025-12-04 02:54:56,186 | INFO     | [payload] execute_payloads thread has finished
[2025-12-04 04:00:23] 2025-12-04 02:54:56,268 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-04 04:00:23] 2025-12-04 02:54:56,392 | INFO     | [payload] failed_post thread has finished
[2025-12-04 04:00:23] 2025-12-04 02:54:57,273 | INFO     | [job] queue monitor thread has finished
[2025-12-04 04:00:23] 2025-12-04 02:54:58,955 | INFO     | [data] queue_monitor thread has finished
[2025-12-04 04:00:23] 2025-12-04 02:55:04,250 | INFO     | job.realtimelogging is not enabled
[2025-12-04 04:00:23] 2025-12-04 02:55:05,255 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-04 04:00:23] 2025-12-04 02:55:23,815 | INFO     | PID=1675552 has CPU usage=6.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-04 04:00:23] 2025-12-04 02:55:23,816 | INFO     | .. there are 8 such processes running
[2025-12-04 04:00:23] 2025-12-04 02:55:23,817 | INFO     | found 0 job(s) in 20 queues
[2025-12-04 04:00:23] 2025-12-04 02:55:23,817 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-04 04:00:23] 2025-12-04 02:55:23,817 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-04 04:00:23] 2025-12-04 02:55:40,710 | INFO     | [monitor] cgroup control has ended
[2025-12-04 04:00:23] 2025-12-04 02:55:42,319 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23235280082752)>', '<ExcThread(monitor, started 23235043231488)>']
[2025-12-04 04:00:23] 2025-12-04 02:55:42,906 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-04 04:00:23] 2025-12-04 02:55:42,906 | INFO     | [monitor] control thread has ended
[2025-12-04 04:00:23] 2025-12-04 02:55:47,344 | INFO     | all workflow threads have been joined
[2025-12-04 04:00:23] 2025-12-04 02:55:47,345 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-04 04:00:23] 2025-12-04 02:55:47,345 | INFO     | traces error code: 0
[2025-12-04 04:00:23] 2025-12-04 02:55:47,345 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-04 04:00:23] 2025-12-04 02:55:47,486 [wrapper] ==== pilot stdout END ====
[2025-12-04 04:00:23] 2025-12-04 02:55:47,490 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-04 04:00:23] 2025-12-04 02:55:47,494 [wrapper] pilotpid: 1675552
[2025-12-04 04:00:23] 2025-12-04 02:55:47,498 [wrapper] Pilot exit status: 0
[2025-12-04 04:00:23] 2025-12-04 02:55:47,513 [wrapper] pandaids: 6896450014
[2025-12-04 04:00:23] 2025-12-04 02:55:47,700 [wrapper] cleanup supervisor_pilot 3003586 1675553
[2025-12-04 04:00:23] 2025-12-04 02:55:47,704 [wrapper] Test setup, not cleaning
[2025-12-04 04:00:23] 2025-12-04 02:55:47,708 [wrapper] apfmon messages muted
[2025-12-04 04:00:23] 2025-12-04 02:55:47,712 [wrapper] ==== wrapper stdout END ====
[2025-12-04 04:00:23] 2025-12-04 02:55:47,715 [wrapper] ==== wrapper stderr END ====
[2025-12-04 04:00:23]  *** Error codes and diagnostics ***
[2025-12-04 04:00:23]     "exeErrorCode": 0,
[2025-12-04 04:00:23]     "exeErrorDiag": "",
[2025-12-04 04:00:23]     "pilotErrorCode": 0,
[2025-12-04 04:00:23]     "pilotErrorDiag": "",
[2025-12-04 04:00:23]  *** Listing of results directory ***
[2025-12-04 04:00:23] total 1321736
[2025-12-04 04:00:23] -rw-r--r-- 1 boinc boinc    576529 Nov 25 04:04 pilot3.tar.gz
[2025-12-04 04:00:23] -rw-r--r-- 1 boinc boinc      5112 Nov 25 04:26 queuedata.json
[2025-12-04 04:00:23] -rwx------ 1 boinc boinc     36292 Nov 25 04:28 runpilot2-wrapper.sh
[2025-12-04 04:00:23] -rw-r--r-- 1 boinc boinc       100 Dec  3 11:50 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-04 04:00:23] -rwxr-xr-x 1 boinc boinc      7986 Dec  3 11:50 run_atlas
[2025-12-04 04:00:23] -rw-r--r-- 1 boinc boinc       105 Dec  3 11:50 job.xml
[2025-12-04 04:00:23] -rw-r--r-- 2 boinc boinc 413820300 Dec  3 11:50 EVNT.47483658._001489.pool.root.1
[2025-12-04 04:00:23] -rw-r--r-- 1 boinc boinc      6688 Dec  3 11:50 init_data.xml
[2025-12-04 04:00:23] drwxrwx--x 2 boinc boinc      4096 Dec  3 11:50 shared
[2025-12-04 04:00:23] -rw-r--r-- 2 boinc boinc    590110 Dec  3 11:50 input.tar.gz
[2025-12-04 04:00:23] -rw-r--r-- 2 boinc boinc     15847 Dec  3 11:50 start_atlas.sh
[2025-12-04 04:00:23] -rw-r--r-- 1 boinc boinc         0 Dec  3 11:50 boinc_lockfile
[2025-12-04 04:00:23] -rw-r--r-- 1 boinc boinc      2785 Dec  3 11:50 pandaJob.out
[2025-12-04 04:00:23] -rw------- 1 boinc boinc    985775 Dec  3 11:51 agis_schedconf.cvmfs.json
[2025-12-04 04:00:23] drwx------ 5 boinc boinc      4096 Dec  3 11:51 pilot3
[2025-12-04 04:00:23] -rw-r--r-- 1 boinc boinc       531 Dec  4 03:49 boinc_task_state.xml
[2025-12-04 04:00:23] -rw------- 1 boinc boinc 916412734 Dec  4 03:54 HITS.47556149._004759.pool.root.1
[2025-12-04 04:00:23] -rw------- 1 boinc boinc      1037 Dec  4 03:54 memory_monitor_summary.json
[2025-12-04 04:00:23] -rw------- 1 boinc boinc   1516240 Dec  4 03:54 agis_ddmendpoints.agis.ALL.json
[2025-12-04 04:00:23] -rw------- 1 boinc boinc   1689441 Dec  4 03:54 log.47556149._004759.job.log.tgz.1
[2025-12-04 04:00:23] -rw------- 1 boinc boinc      7926 Dec  4 03:54 heartbeat.json
[2025-12-04 04:00:23] -rw------- 1 boinc boinc        95 Dec  4 03:55 pilot_heartbeat.json
[2025-12-04 04:00:23] -rw------- 1 boinc boinc      4907 Dec  4 03:55 pilotlog.txt
[2025-12-04 04:00:23] -rw------- 1 boinc boinc   7969575 Dec  4 03:55 log.47556149._004759.job.log.1
[2025-12-04 04:00:23] -rw------- 1 boinc boinc       353 Dec  4 03:55 output.list
[2025-12-04 04:00:23] -rw-r--r-- 1 boinc boinc       620 Dec  4 03:55 runtime_log
[2025-12-04 04:00:23] -rw------- 1 boinc boinc   9676800 Dec  4 03:55 result.tar.gz
[2025-12-04 04:00:23] -rw-r--r-- 1 boinc boinc      9223 Dec  4 03:55 runtime_log.err
[2025-12-04 04:00:23] -rw------- 1 boinc boinc       670 Dec  4 03:55 DFZNDm5tyh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmDIJKDmgE9J3m.diag
[2025-12-04 04:00:23] -rw-r--r-- 1 boinc boinc        28 Dec  4 04:00 wrapper_checkpoint.txt
[2025-12-04 04:00:23] -rw-r--r-- 1 boinc boinc      8192 Dec  4 04:00 boinc_mmap_file
[2025-12-04 04:00:23] -rw-r--r-- 1 boinc boinc     21101 Dec  4 04:00 stderr.txt
[2025-12-04 04:00:23] HITS file was successfully produced:
[2025-12-04 04:00:23] -rw------- 1 boinc boinc 916412734 Dec  4 03:54 shared/HITS.pool.root.1
[2025-12-04 04:00:23]  *** Contents of shared directory: ***
[2025-12-04 04:00:23] total 1309116
[2025-12-04 04:00:23] -rw-r--r-- 2 boinc boinc 413820300 Dec  3 11:50 ATLAS.root_0
[2025-12-04 04:00:23] -rw-r--r-- 2 boinc boinc    590110 Dec  3 11:50 input.tar.gz
[2025-12-04 04:00:23] -rw-r--r-- 2 boinc boinc     15847 Dec  3 11:50 start_atlas.sh
[2025-12-04 04:00:23] -rw------- 1 boinc boinc 916412734 Dec  4 03:54 HITS.pool.root.1
[2025-12-04 04:00:23] -rw------- 1 boinc boinc   9676800 Dec  4 03:55 result.tar.gz
04:00:24 (1671479): run_atlas exited; CPU time 231481.836894
04:00:24 (1671479): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN