Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
07:35:39 (2565): wrapper (7.7.26015): starting
07:35:39 (2565): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 07:35:39] Arguments: --nthreads 8
[2025-11-26 07:35:39] Threads: 8
[2025-11-26 07:35:39] Checking for CVMFS
[2025-11-26 07:35:39] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 07:35:39] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 07:35:39] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 07:35:39] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 07:35:39] 2.11.2.0 12825 117667 138588 153322 0 81 10771806 18432001 1885 130560 0 82512534 99.975 4668285 22910 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-26 07:35:39] CVMFS is ok
[2025-11-26 07:35:39] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 07:35:39] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 07:35:39] Further information can be found at the LHC@home message board.
[2025-11-26 07:35:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 07:35:39] Checking for apptainer binary...
[2025-11-26 07:35:39] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 07:35:39] Running /usr/bin/apptainer --version
[2025-11-26 07:35:39] apptainer version 1.3.2-1.el7
[2025-11-26 07:35:39] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 07:35:40] c-206-8.aglt2.org
[2025-11-26 07:35:40] apptainer works
[2025-11-26 07:35:40] Set ATHENA_PROC_NUMBER=8
[2025-11-26 07:35:40] Set ATHENA_CORE_NUMBER=8
[2025-11-26 07:35:40] Starting ATLAS job with PandaID=6896556887
[2025-11-26 07:35:40] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 03:36:08]  *** The last 200 lines of the pilot log: ***
[2025-11-27 03:36:08] 2025-11-27 08:35:34,830 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 03:36:08] 2025-11-27 08:35:34,861 | INFO     | fitting pss+swap vs Time
[2025-11-27 03:36:08] 2025-11-27 08:35:34,863 | INFO     | sum of square deviations: 509476701554.9322
[2025-11-27 03:36:08] 2025-11-27 08:35:34,908 | INFO     | sum of deviations: 2263774836325.361
[2025-11-27 03:36:08] 2025-11-27 08:35:34,909 | INFO     | mean x: 1764196538.092373
[2025-11-27 03:36:08] 2025-11-27 08:35:34,909 | INFO     | mean y: 2877047.3177966103
[2025-11-27 03:36:08] 2025-11-27 08:35:34,909 | INFO     | intersect: -7836036326.104091
[2025-11-27 03:36:08] 2025-11-27 08:35:34,911 | INFO     | chi2: 5.508542171492343
[2025-11-27 03:36:08] 2025-11-27 08:35:34,913 | INFO     | sum of square deviations: 503027919413.16986
[2025-11-27 03:36:08] 2025-11-27 08:35:34,959 | INFO     | sum of deviations: 2621870792860.4785
[2025-11-27 03:36:08] 2025-11-27 08:35:34,960 | INFO     | mean x: 1764196385.5948937
[2025-11-27 03:36:08] 2025-11-27 08:35:34,960 | INFO     | mean y: 2885511.179574468
[2025-11-27 03:36:08] 2025-11-27 08:35:34,960 | INFO     | intersect: -9192419158.305483
[2025-11-27 03:36:08] 2025-11-27 08:35:34,962 | INFO     | chi2: 2.8301379493603713
[2025-11-27 03:36:08] 2025-11-27 08:35:34,962 | INFO     | current chi2=2.8301379493603713 (change=48.6227415302941 %)
[2025-11-27 03:36:08] 2025-11-27 08:35:34,964 | INFO     | sum of square deviations: 496633789458.89264
[2025-11-27 03:36:08] 2025-11-27 08:35:34,990 | INFO     | sum of deviations: 2767420749527.077
[2025-11-27 03:36:08] 2025-11-27 08:35:34,990 | INFO     | mean x: 1764196233.097436
[2025-11-27 03:36:08] 2025-11-27 08:35:34,990 | INFO     | mean y: 2888980.858974359
[2025-11-27 03:36:08] 2025-11-27 08:35:34,990 | INFO     | intersect: -9827842164.178164
[2025-11-27 03:36:08] 2025-11-27 08:35:34,992 | INFO     | chi2: 2.280184862026934
[2025-11-27 03:36:08] 2025-11-27 08:35:34,992 | INFO     | current chi2=2.280184862026934 (change=19.43202406291644 %)
[2025-11-27 03:36:08] 2025-11-27 08:35:34,992 | INFO     | right removable region: 1169
[2025-11-27 03:36:08] 2025-11-27 08:35:34,993 | INFO     | sum of square deviations: 503027493023.1692
[2025-11-27 03:36:08] 2025-11-27 08:35:35,018 | INFO     | sum of deviations: 1958881097504.9219
[2025-11-27 03:36:08] 2025-11-27 08:35:35,018 | INFO     | mean x: 1764196690.5948937
[2025-11-27 03:36:08] 2025-11-27 08:35:35,019 | INFO     | mean y: 2884249.153191489
[2025-11-27 03:36:08] 2025-11-27 08:35:35,019 | INFO     | intersect: -6867220461.660103
[2025-11-27 03:36:08] 2025-11-27 08:35:35,020 | INFO     | chi2: 3.5045182919660194
[2025-11-27 03:36:08] 2025-11-27 08:35:35,020 | INFO     | current chi2=3.5045182919660194 (change=36.38029477013888 %)
[2025-11-27 03:36:08] 2025-11-27 08:35:35,021 | INFO     | sum of square deviations: 496633151704.46924
[2025-11-27 03:36:08] 2025-11-27 08:35:35,046 | INFO     | sum of deviations: 1878495117988.607
[2025-11-27 03:36:08] 2025-11-27 08:35:35,046 | INFO     | mean x: 1764196843.0948718
[2025-11-27 03:36:08] 2025-11-27 08:35:35,047 | INFO     | mean y: 2886165.9675213676
[2025-11-27 03:36:08] 2025-11-27 08:35:35,047 | INFO     | intersect: -6670118134.189845
[2025-11-27 03:36:08] 2025-11-27 08:35:35,048 | INFO     | chi2: 3.446021250616884
[2025-11-27 03:36:08] 2025-11-27 08:35:35,048 | INFO     | current chi2=3.446021250616884 (change=1.669189214484558 %)
[2025-11-27 03:36:08] 2025-11-27 08:35:35,048 | INFO     | left removable region: 20
[2025-11-27 03:36:08] 2025-11-27 08:35:35,049 | INFO     | sum of square deviations: 470368860761.4378
[2025-11-27 03:36:08] 2025-11-27 08:35:35,059 | INFO     | size of work directory /tmp/boinchome/slots/2/PanDA_Pilot-6896556887: 8409654 B (within 2537553920 B limit)
[2025-11-27 03:36:08] 2025-11-27 08:35:35,059 | INFO     | pfn file=/tmp/boinchome/slots/2/PanDA_Pilot-6896556887/HITS.47556173._000441.pool.root.1 does not exist (skip from workdir size calculation)
[2025-11-27 03:36:08] 2025-11-27 08:35:35,060 | INFO     | total size of present files: 0 B (workdir size: 8409654 B)
[2025-11-27 03:36:08] 2025-11-27 08:35:35,060 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/2/PanDA_Pilot-6896556887/HITS.47556173._000441.pool.root.1 since it does not exist
[2025-11-27 03:36:08] 2025-11-27 08:35:35,095 | INFO     | sum of deviations: 2286995048530.167
[2025-11-27 03:36:08] 2025-11-27 08:35:35,096 | INFO     | mean x: 1764196812.6013925
[2025-11-27 03:36:08] 2025-11-27 08:35:35,096 | INFO     | mean y: 2901009.0200174064
[2025-11-27 03:36:08] 2025-11-27 08:35:35,096 | INFO     | intersect: -8574855113.102224
[2025-11-27 03:36:08] 2025-11-27 08:35:35,098 | INFO     | chi2: 0.16773698701512751
[2025-11-27 03:36:08] 2025-11-27 08:35:35,099 | INFO     | current memory leak: 4.86 B/s (using 1149 data points, chi2=0.17)
[2025-11-27 03:36:08] 2025-11-27 08:35:35,100 | INFO     | could have reported an average CPU frequency of 2631 MHz (43 samples)
[2025-11-27 03:36:08] 2025-11-27 08:35:35,100 | INFO     | ..............................
[2025-11-27 03:36:08] 2025-11-27 08:35:35,101 | INFO     | . Timing measurements:
[2025-11-27 03:36:08] 2025-11-27 08:35:35,101 | INFO     | . get job = 0 s
[2025-11-27 03:36:08] 2025-11-27 08:35:35,101 | INFO     | . initial setup = 2 s
[2025-11-27 03:36:08] 2025-11-27 08:35:35,101 | INFO     | . payload setup = 5 s
[2025-11-27 03:36:08] 2025-11-27 08:35:35,102 | INFO     | . stage-in = 0 s
[2025-11-27 03:36:08] 2025-11-27 08:35:35,102 | INFO     | . payload execution = 71949 s
[2025-11-27 03:36:08] 2025-11-27 08:35:35,102 | INFO     | . stage-out = 3 s
[2025-11-27 03:36:08] 2025-11-27 08:35:35,102 | INFO     | . log creation = 0 s
[2025-11-27 03:36:08] 2025-11-27 08:35:35,102 | INFO     | ..............................
[2025-11-27 03:36:08] 2025-11-27 08:35:35,301 | INFO     | 
[2025-11-27 03:36:08] 2025-11-27 08:35:35,302 | INFO     | job summary report
[2025-11-27 03:36:08] 2025-11-27 08:35:35,302 | INFO     | --------------------------------------------------
[2025-11-27 03:36:08] 2025-11-27 08:35:35,302 | INFO     | PanDA job id: 6896556887
[2025-11-27 03:36:08] 2025-11-27 08:35:35,302 | INFO     | task id: 47556173
[2025-11-27 03:36:08] 2025-11-27 08:35:35,303 | INFO     | errors: (none)
[2025-11-27 03:36:08] 2025-11-27 08:35:35,303 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 03:36:08] 2025-11-27 08:35:35,303 | INFO     | pilot state: finished 
[2025-11-27 03:36:08] 2025-11-27 08:35:35,303 | INFO     | transexitcode: 0
[2025-11-27 03:36:08] 2025-11-27 08:35:35,304 | INFO     | exeerrorcode: 0
[2025-11-27 03:36:08] 2025-11-27 08:35:35,304 | INFO     | exeerrordiag: 
[2025-11-27 03:36:08] 2025-11-27 08:35:35,304 | INFO     | exitcode: 0
[2025-11-27 03:36:08] 2025-11-27 08:35:35,305 | INFO     | exitmsg: OK
[2025-11-27 03:36:08] 2025-11-27 08:35:35,305 | INFO     | cpuconsumptiontime: 554841 s
[2025-11-27 03:36:08] 2025-11-27 08:35:35,305 | INFO     | nevents: 1000
[2025-11-27 03:36:08] 2025-11-27 08:35:35,305 | INFO     | neventsw: 0
[2025-11-27 03:36:08] 2025-11-27 08:35:35,306 | INFO     | pid: 12784
[2025-11-27 03:36:08] 2025-11-27 08:35:35,306 | INFO     | pgrp: 12784
[2025-11-27 03:36:08] 2025-11-27 08:35:35,306 | INFO     | corecount: 8
[2025-11-27 03:36:08] 2025-11-27 08:35:35,306 | INFO     | event service: False
[2025-11-27 03:36:08] 2025-11-27 08:35:35,306 | INFO     | sizes: {0: 2283478, 1: 2284334, 2: 2284334, 5: 2284624, 12: 2284680, 71958: 2342885, 71962: 2351879, 71963: 2351935, 71967: 2352209}
[2025-11-27 03:36:08] 2025-11-27 08:35:35,307 | INFO     | --------------------------------------------------
[2025-11-27 03:36:08] 2025-11-27 08:35:35,307 | INFO     | 
[2025-11-27 03:36:08] 2025-11-27 08:35:35,307 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-27 03:36:08] 2025-11-27 08:35:35,330 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 03:36:08] 2025-11-27 08:35:35,330 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 03:36:08] 2025-11-27 08:35:35,331 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 03:36:08] 2025-11-27 08:35:35,331 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 03:36:08] 2025-11-27 08:35:35,331 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 03:36:08] 2025-11-27 08:35:35,331 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 03:36:08] 2025-11-27 08:35:35,331 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 03:36:08] 2025-11-27 08:35:35,332 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 03:36:08] 2025-11-27 08:35:35,332 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 03:36:08] 2025-11-27 08:35:35,332 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 03:36:08] 2025-11-27 08:35:35,332 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 03:36:08] 2025-11-27 08:35:35,332 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 03:36:08] 2025-11-27 08:35:35,333 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 03:36:08] 2025-11-27 08:35:35,333 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 03:36:08] 2025-11-27 08:35:35,333 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 03:36:08] 2025-11-27 08:35:35,333 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 03:36:08] 2025-11-27 08:35:35,333 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 03:36:08] 2025-11-27 08:35:35,334 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 03:36:08] 2025-11-27 08:35:35,334 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 03:36:08] 2025-11-27 08:35:35,334 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 03:36:08] 2025-11-27 08:35:35,334 | INFO     | job 6896556887 has completed (purged errors)
[2025-11-27 03:36:08] 2025-11-27 08:35:35,335 | INFO     | overall cleanup function is called
[2025-11-27 03:36:08] 2025-11-27 08:35:35,447 | INFO     | number of running child processes to parent process 12784: 1
[2025-11-27 03:36:08] 2025-11-27 08:35:35,447 | INFO     | maximum number of monitored processes: 16
[2025-11-27 03:36:08] 2025-11-27 08:35:35,448 | INFO     | aborting job monitoring since job object (job id=6896556887) has expired
[2025-11-27 03:36:08] 2025-11-27 08:35:36,359 | INFO     | --- collectZombieJob: --- 10, [12784]
[2025-11-27 03:36:08] 2025-11-27 08:35:36,359 | INFO     | zombie collector waiting for pid 12784
[2025-11-27 03:36:08] 2025-11-27 08:35:36,359 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 03:36:08] 2025-11-27 08:35:36,359 | INFO     | collected zombie processes
[2025-11-27 03:36:08] 2025-11-27 08:35:36,359 | INFO     | will attempt to kill all subprocesses of pid=12784
[2025-11-27 03:36:08] 2025-11-27 08:35:36,528 | INFO     | process IDs to be killed: [12784] (in reverse order)
[2025-11-27 03:36:08] 2025-11-27 08:35:36,578 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 03:36:08] 2025-11-27 08:35:36,578 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 03:36:08] 2025-11-27 08:35:36,581 | INFO     | did not find any defunct processes belonging to 12784
[2025-11-27 03:36:08] 2025-11-27 08:35:36,583 | INFO     | did not find any defunct processes belonging to 12784
[2025-11-27 03:36:08] 2025-11-27 08:35:36,585 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 03:36:08] 2025-11-27 08:35:36,585 | INFO     | ready for new job
[2025-11-27 03:36:08] 2025-11-27 08:35:36,585 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 03:36:08] 2025-11-27 08:35:36,589 | INFO     | ***************************************
[2025-11-27 03:36:08] 2025-11-27 08:35:36,589 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 03:36:08] 2025-11-27 08:35:36,589 | INFO     | ***************************************
[2025-11-27 03:36:08] 2025-11-27 08:35:36,589 | INFO     | 
[2025-11-27 03:36:08] 2025-11-27 08:35:36,590 | INFO     | architecture information:
[2025-11-27 03:36:08] 2025-11-27 08:35:36,590 | INFO     | executing command: cat /etc/os-release
[2025-11-27 03:36:08] 2025-11-27 08:35:36,603 | INFO     | cat /etc/os-release:
[2025-11-27 03:36:08] NAME="CentOS Linux"
[2025-11-27 03:36:08] VERSION="7 (Core)"
[2025-11-27 03:36:08] ID="centos"
[2025-11-27 03:36:08] ID_LIKE="rhel fedora"
[2025-11-27 03:36:08] VERSION_ID="7"
[2025-11-27 03:36:08] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 03:36:08] ANSI_COLOR="0;31"
[2025-11-27 03:36:08] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 03:36:08] HOME_URL="https://www.centos.org/"
[2025-11-27 03:36:08] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 03:36:08] 
[2025-11-27 03:36:08] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 03:36:08] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 03:36:08] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 03:36:08] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 03:36:08] 
[2025-11-27 03:36:08] 2025-11-27 08:35:36,603 | INFO     | ***************************************
[2025-11-27 03:36:08] 2025-11-27 08:35:37,106 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-27 03:36:08] 2025-11-27 08:35:37,121 | INFO     | sufficient remaining disk space (25608323072 B)
[2025-11-27 03:36:08] 2025-11-27 08:35:37,121 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 03:36:08] 2025-11-27 08:35:37,121 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 03:36:08] 2025-11-27 08:35:37,121 | INFO     | update_server=False
[2025-11-27 03:36:08] 2025-11-27 08:35:37,122 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 03:36:08] 2025-11-27 08:35:37,122 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 03:36:08] 2025-11-27 08:35:37,122 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 03:36:08] 2025-11-27 08:35:37,123 | INFO     | aborting loop
[2025-11-27 03:36:08] 2025-11-27 08:35:37,122 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 03:36:08] 2025-11-27 08:35:37,800 | INFO     | all job control threads have been joined
[2025-11-27 03:36:08] 2025-11-27 08:35:37,832 | INFO     | all data control threads have been joined
[2025-11-27 03:36:08] 2025-11-27 08:35:38,128 | INFO     | [job] retrieve thread has finished
[2025-11-27 03:36:08] 2025-11-27 08:35:38,128 | INFO     | [job] queue monitor thread has finished
[2025-11-27 03:36:08] 2025-11-27 08:35:38,129 | INFO     | [job] job monitor thread has finished
[2025-11-27 03:36:08] 2025-11-27 08:35:38,233 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 03:36:08] 2025-11-27 08:35:38,269 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 03:36:08] 2025-11-27 08:35:38,325 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 03:36:08] 2025-11-27 08:35:38,325 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 03:36:08] 2025-11-27 08:35:38,344 | INFO     | all payload control threads have been joined
[2025-11-27 03:36:08] 2025-11-27 08:35:38,508 | INFO     | [payload] validate_post thread has finished
[2025-11-27 03:36:08] 2025-11-27 08:35:38,805 | INFO     | [job] control thread has finished
[2025-11-27 03:36:08] 2025-11-27 08:35:38,837 | INFO     | [data] control thread has finished
[2025-11-27 03:36:08] 2025-11-27 08:35:38,838 | INFO     | [job] validate thread has finished
[2025-11-27 03:36:08] 2025-11-27 08:35:39,143 | INFO     | [payload] failed_post thread has finished
[2025-11-27 03:36:08] 2025-11-27 08:35:39,150 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 03:36:08] 2025-11-27 08:35:39,279 | INFO     | [data] copytool_in thread has finished
[2025-11-27 03:36:08] 2025-11-27 08:35:39,349 | INFO     | [payload] control thread has finished
[2025-11-27 03:36:08] 2025-11-27 08:35:40,238 | INFO     | [data] copytool_out thread has finished
[2025-11-27 03:36:08] 2025-11-27 08:35:41,125 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 03:36:08] 2025-11-27 08:35:51,005 | INFO     | [monitor] cgroup control has ended
[2025-11-27 03:36:08] 2025-11-27 08:35:51,612 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139941548992320)>', '<ExcThread(monitor, started 139940813850368)>']
[2025-11-27 03:36:08] 2025-11-27 08:35:56,279 [wrapper] supervise_pilot (15 min periods counter: 81)
[2025-11-27 03:36:08] 2025-11-27 08:35:56,638 | INFO     | all workflow threads have been joined
[2025-11-27 03:36:08] 2025-11-27 08:35:56,638 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 03:36:08] 2025-11-27 08:35:56,638 | INFO     | traces error code: 0
[2025-11-27 03:36:08] 2025-11-27 08:35:56,638 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 03:36:08] 2025-11-27 08:36:07,781 | INFO     | PID=6333 has CPU usage=8.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-27 03:36:08] 2025-11-27 08:36:07,781 | INFO     | .. there are 3 such processes running
[2025-11-27 03:36:08] 2025-11-27 08:36:07,782 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 03:36:08] 2025-11-27 08:36:07,782 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 03:36:08] 2025-11-27 08:36:07,782 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 03:36:08] 2025-11-27 08:36:07,782 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 03:36:08] 2025-11-27 08:36:07,782 | INFO     | [monitor] control thread has ended
[2025-11-27 03:36:08] 2025-11-27 08:36:07,913 [wrapper] ==== pilot stdout END ====
[2025-11-27 03:36:08] 2025-11-27 08:36:07,916 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 03:36:08] 2025-11-27 08:36:07,918 [wrapper] pilotpid: 6333
[2025-11-27 03:36:08] 2025-11-27 08:36:07,921 [wrapper] Pilot exit status: 0
[2025-11-27 03:36:08] 2025-11-27 08:36:07,936 [wrapper] pandaids: 6896556887
[2025-11-27 03:36:08] 2025-11-27 08:36:07,970 [wrapper] cleanup supervisor_pilot 30405 6334
[2025-11-27 03:36:08] 2025-11-27 08:36:07,973 [wrapper] Test setup, not cleaning
[2025-11-27 03:36:08] 2025-11-27 08:36:07,975 [wrapper] apfmon messages muted
[2025-11-27 03:36:08] 2025-11-27 08:36:07,978 [wrapper] ==== wrapper stdout END ====
[2025-11-27 03:36:08] 2025-11-27 08:36:07,981 [wrapper] ==== wrapper stderr END ====
[2025-11-27 03:36:08]  *** Error codes and diagnostics ***
[2025-11-27 03:36:08]     "exeErrorCode": 0,
[2025-11-27 03:36:08]     "exeErrorDiag": "",
[2025-11-27 03:36:08]     "pilotErrorCode": 0,
[2025-11-27 03:36:08]     "pilotErrorDiag": "",
[2025-11-27 03:36:08]  *** Listing of results directory ***
[2025-11-27 03:36:08] total 1345052
[2025-11-27 03:36:08] -rw-r--r-- 1 boincer umatlas    576529 Nov 24 23:09 pilot3.tar.gz
[2025-11-27 03:36:08] -rw-r--r-- 1 boincer umatlas      5112 Nov 24 23:46 queuedata.json
[2025-11-27 03:36:08] -rwx------ 1 boincer umatlas     36292 Nov 24 23:48 runpilot2-wrapper.sh
[2025-11-27 03:36:08] -rw-r--r-- 1 boincer umatlas       100 Nov 26 07:35 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 03:36:08] -rwxr-xr-x 1 boincer umatlas      7986 Nov 26 07:35 run_atlas
[2025-11-27 03:36:08] -rw-r--r-- 1 boincer umatlas       105 Nov 26 07:35 job.xml
[2025-11-27 03:36:08] -rw-r--r-- 2 boincer umatlas 411356478 Nov 26 07:35 EVNT.47483658._003062.pool.root.1
[2025-11-27 03:36:08] -rw-r--r-- 2 boincer umatlas     15847 Nov 26 07:35 start_atlas.sh
[2025-11-27 03:36:08] drwxrwx--x 2 boincer umatlas      4096 Nov 26 07:35 shared
[2025-11-27 03:36:08] -rw-r--r-- 2 boincer umatlas    590105 Nov 26 07:35 input.tar.gz
[2025-11-27 03:36:08] -rw-r--r-- 1 boincer umatlas         0 Nov 26 07:35 boinc_lockfile
[2025-11-27 03:36:08] -rw-r--r-- 1 boincer umatlas      2781 Nov 26 07:35 pandaJob.out
[2025-11-27 03:36:08] -rw------- 1 boincer umatlas        57 Nov 26 07:35 setup.sh.local
[2025-11-27 03:36:08] -rw------- 1 boincer umatlas    991830 Nov 26 07:35 agis_schedconf.cvmfs.json
[2025-11-27 03:36:08] drwx------ 5 boincer umatlas      4096 Nov 26 07:35 pilot3
[2025-11-27 03:36:08] -rw-r--r-- 1 boincer umatlas       533 Nov 27 03:23 boinc_task_state.xml
[2025-11-27 03:36:08] -rw-r--r-- 1 boincer umatlas      5953 Nov 27 03:27 init_data.xml
[2025-11-27 03:36:08] -rw------- 1 boincer umatlas 937495545 Nov 27 03:34 HITS.47556173._000441.pool.root.1
[2025-11-27 03:36:08] -rw------- 1 boincer umatlas      1068 Nov 27 03:35 memory_monitor_summary.json
[2025-11-27 03:36:08] -rw------- 1 boincer umatlas   1516240 Nov 27 03:35 agis_ddmendpoints.agis.ALL.json
[2025-11-27 03:36:08] -rw------- 1 boincer umatlas   2337223 Nov 27 03:35 log.47556173._000441.job.log.tgz.1
[2025-11-27 03:36:08] -rw------- 1 boincer umatlas        95 Nov 27 03:35 pilot_heartbeat.json
[2025-11-27 03:36:08] -rw------- 1 boincer umatlas      8654 Nov 27 03:35 heartbeat.json
[2025-11-27 03:36:08] -rw-r--r-- 1 boincer umatlas      8192 Nov 27 03:36 boinc_mmap_file
[2025-11-27 03:36:08] -rw-r--r-- 1 boincer umatlas        29 Nov 27 03:36 wrapper_checkpoint.txt
[2025-11-27 03:36:08] -rw------- 1 boincer umatlas       819 Nov 27 03:36 pilotlog.txt
[2025-11-27 03:36:08] -rw------- 1 boincer umatlas   9946049 Nov 27 03:36 log.47556173._000441.job.log.1
[2025-11-27 03:36:08] -rw------- 1 boincer umatlas       353 Nov 27 03:36 output.list
[2025-11-27 03:36:08] -rw-r--r-- 1 boincer umatlas       620 Nov 27 03:36 runtime_log
[2025-11-27 03:36:08] -rw------- 1 boincer umatlas  12298240 Nov 27 03:36 result.tar.gz
[2025-11-27 03:36:08] -rw-r--r-- 1 boincer umatlas      9338 Nov 27 03:36 runtime_log.err
[2025-11-27 03:36:08] -rw------- 1 boincer umatlas       667 Nov 27 03:36 NTfKDmb9zh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmhKJKDmF6lpEn.diag
[2025-11-27 03:36:08] -rw-r--r-- 1 boincer umatlas     21479 Nov 27 03:36 stderr.txt
[2025-11-27 03:36:08] HITS file was successfully produced:
[2025-11-27 03:36:08] -rw------- 1 boincer umatlas 937495545 Nov 27 03:34 shared/HITS.pool.root.1
[2025-11-27 03:36:08]  *** Contents of shared directory: ***
[2025-11-27 03:36:08] total 1329856
[2025-11-27 03:36:08] -rw-r--r-- 2 boincer umatlas 411356478 Nov 26 07:35 ATLAS.root_0
[2025-11-27 03:36:08] -rw-r--r-- 2 boincer umatlas     15847 Nov 26 07:35 start_atlas.sh
[2025-11-27 03:36:08] -rw-r--r-- 2 boincer umatlas    590105 Nov 26 07:35 input.tar.gz
[2025-11-27 03:36:08] -rw------- 1 boincer umatlas 937495545 Nov 27 03:34 HITS.pool.root.1
[2025-11-27 03:36:08] -rw------- 1 boincer umatlas  12298240 Nov 27 03:36 result.tar.gz
03:36:10 (2565): run_atlas exited; CPU time 553631.581054
03:36:10 (2565): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN