Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
08:03:08 (3176390): wrapper (7.7.26015): starting
08:03:08 (3176390): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 08:03:08] Arguments: --nthreads 8
[2025-11-26 08:03:08] Threads: 8
[2025-11-26 08:03:08] Checking for CVMFS
[2025-11-26 08:03:09] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 08:03:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 08:03:09] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 08:03:10] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 08:03:10] 2.13.3.0 15513 30032 385472 153322 3 485 28615055 40960001 52581 16776704 0 297578195 99.866 99616877 31716 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 08:03:10] CVMFS is ok
[2025-11-26 08:03:10] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 08:03:10] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 08:03:10] Further information can be found at the LHC@home message board.
[2025-11-26 08:03:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 08:03:10] Checking for apptainer binary...
[2025-11-26 08:03:10] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 08:03:10] Running /usr/bin/apptainer --version
[2025-11-26 08:03:10] apptainer version 1.4.4-1.el9
[2025-11-26 08:03:10] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 08:03:11] c-1-1.aglt2.org
[2025-11-26 08:03:11] apptainer works
[2025-11-26 08:03:11] Set ATHENA_PROC_NUMBER=8
[2025-11-26 08:03:11] Set ATHENA_CORE_NUMBER=8
[2025-11-26 08:03:11] Starting ATLAS job with PandaID=6896297847
[2025-11-26 08:03:11] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 06:41:54]  *** The last 200 lines of the pilot log: ***
[2025-11-27 06:41:54] 2025-11-27 11:40:57,342 | INFO     | monitor loop #4302: job 0:6896297847 is in state 'finished'
[2025-11-27 06:41:54] 2025-11-27 11:40:57,342 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 06:41:54] 2025-11-27 11:40:57,543 | INFO     | time since job start (81398s) is within the limit (172800.0s)
[2025-11-27 06:41:54] 2025-11-27 11:40:59,555 | INFO     | time since job start (81400s) is within the limit (172800.0s)
[2025-11-27 06:41:54] 2025-11-27 11:40:59,847 | INFO     | monitor loop #4303: job 0:6896297847 is in state 'finished'
[2025-11-27 06:41:54] 2025-11-27 11:40:59,847 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 06:41:54] 2025-11-27 11:41:01,565 | INFO     | time since job start (81402s) is within the limit (172800.0s)
[2025-11-27 06:41:54] 2025-11-27 11:41:02,352 | INFO     | monitor loop #4304: job 0:6896297847 is in state 'finished'
[2025-11-27 06:41:54] 2025-11-27 11:41:02,352 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 06:41:54] 2025-11-27 11:41:03,572 | INFO     | time since job start (81404s) is within the limit (172800.0s)
[2025-11-27 06:41:54] 2025-11-27 11:41:04,468 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 06:41:54] 2025-11-27 11:41:04,482 | INFO     | found 40 cores (20 cores per socket, 2 sockets) HT, CPU MHz: 2898.1314875000003
[2025-11-27 06:41:54] 2025-11-27 11:41:04,497 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6896297847/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 06:41:54] 2025-11-27 11:41:04,499 | INFO     | extracted standard info from prmon json
[2025-11-27 06:41:54] 2025-11-27 11:41:04,500 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 06:41:54] 2025-11-27 11:41:04,500 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 06:41:54] 2025-11-27 11:41:04,536 | INFO     | fitting pss+swap vs Time
[2025-11-27 06:41:54] 2025-11-27 11:41:04,537 | INFO     | sum of square deviations: 732796284591.3048
[2025-11-27 06:41:54] 2025-11-27 11:41:04,588 | INFO     | sum of deviations: 4080534492386.193
[2025-11-27 06:41:54] 2025-11-27 11:41:04,588 | INFO     | mean x: 1764202998.6388888
[2025-11-27 06:41:54] 2025-11-27 11:41:04,588 | INFO     | mean y: 2908159.6448948947
[2025-11-27 06:41:54] 2025-11-27 11:41:04,588 | INFO     | intersect: -9820956042.303267
[2025-11-27 06:41:54] 2025-11-27 11:41:04,590 | INFO     | chi2: 15.05228824773111
[2025-11-27 06:41:54] 2025-11-27 11:41:04,591 | INFO     | sum of square deviations: 724575328004.7957
[2025-11-27 06:41:54] 2025-11-27 11:41:04,625 | INFO     | sum of deviations: 4530628272983.569
[2025-11-27 06:41:54] 2025-11-27 11:41:04,625 | INFO     | mean x: 1764202846.1431801
[2025-11-27 06:41:54] 2025-11-27 11:41:04,625 | INFO     | mean y: 2916508.0128108514
[2025-11-27 06:41:54] 2025-11-27 11:41:04,626 | INFO     | intersect: -11028299964.709085
[2025-11-27 06:41:54] 2025-11-27 11:41:04,627 | INFO     | chi2: 11.884186686401382
[2025-11-27 06:41:54] 2025-11-27 11:41:04,627 | INFO     | current chi2=11.884186686401382 (change=21.047308616397697 %)
[2025-11-27 06:41:54] 2025-11-27 11:41:04,627 | INFO     | right removable region: 1326
[2025-11-27 06:41:54] 2025-11-27 11:41:04,629 | INFO     | sum of square deviations: 724574402634.7958
[2025-11-27 06:41:54] 2025-11-27 11:41:04,659 | INFO     | sum of deviations: 3553838257246.3438
[2025-11-27 06:41:54] 2025-11-27 11:41:04,659 | INFO     | mean x: 1764203151.1431801
[2025-11-27 06:41:54] 2025-11-27 11:41:04,659 | INFO     | mean y: 2917926.8824415975
[2025-11-27 06:41:54] 2025-11-27 11:41:04,659 | INFO     | intersect: -8650013544.735214
[2025-11-27 06:41:54] 2025-11-27 11:41:04,660 | INFO     | chi2: 11.082745709584337
[2025-11-27 06:41:54] 2025-11-27 11:41:04,661 | INFO     | current chi2=11.082745709584337 (change=26.371688296263642 %)
[2025-11-27 06:41:54] 2025-11-27 11:41:04,662 | INFO     | sum of square deviations: 716414242765.7355
[2025-11-27 06:41:54] 2025-11-27 11:41:04,692 | INFO     | sum of deviations: 3112846143871.0796
[2025-11-27 06:41:54] 2025-11-27 11:41:04,692 | INFO     | mean x: 1764203303.6475039
[2025-11-27 06:41:54] 2025-11-27 11:41:04,692 | INFO     | mean y: 2926165.67397882
[2025-11-27 06:41:54] 2025-11-27 11:41:04,692 | INFO     | intersect: -7662601852.812824
[2025-11-27 06:41:54] 2025-11-27 11:41:04,694 | INFO     | chi2: 8.386971411001381
[2025-11-27 06:41:54] 2025-11-27 11:41:04,694 | INFO     | current chi2=8.386971411001381 (change=24.32406525624472 %)
[2025-11-27 06:41:54] 2025-11-27 11:41:04,694 | INFO     | left removable region: 20
[2025-11-27 06:41:54] 2025-11-27 11:41:04,696 | INFO     | sum of square deviations: 690715867388.1774
[2025-11-27 06:41:54] 2025-11-27 11:41:04,727 | INFO     | sum of deviations: 3370732392310.9062
[2025-11-27 06:41:54] 2025-11-27 11:41:04,727 | INFO     | mean x: 1764203425.6523736
[2025-11-27 06:41:54] 2025-11-27 11:41:04,727 | INFO     | mean y: 2941497.8698315467
[2025-11-27 06:41:54] 2025-11-27 11:41:04,727 | INFO     | intersect: -8606470728.258083
[2025-11-27 06:41:54] 2025-11-27 11:41:04,729 | INFO     | chi2: 4.18980517499662
[2025-11-27 06:41:54] 2025-11-27 11:41:04,730 | INFO     | current memory leak: 4.88 B/s (using 1306 data points, chi2=4.19)
[2025-11-27 06:41:54] 2025-11-27 11:41:04,767 | INFO     | could have reported an average CPU frequency of 2941 MHz (48 samples)
[2025-11-27 06:41:54] 2025-11-27 11:41:04,767 | INFO     | ..............................
[2025-11-27 06:41:54] 2025-11-27 11:41:04,767 | INFO     | . Timing measurements:
[2025-11-27 06:41:54] 2025-11-27 11:41:04,767 | INFO     | . get job = 0 s
[2025-11-27 06:41:54] 2025-11-27 11:41:04,768 | INFO     | . initial setup = 4 s
[2025-11-27 06:41:54] 2025-11-27 11:41:04,768 | INFO     | . payload setup = 45 s
[2025-11-27 06:41:54] 2025-11-27 11:41:04,768 | INFO     | . stage-in = 0 s
[2025-11-27 06:41:54] 2025-11-27 11:41:04,768 | INFO     | . payload execution = 81262 s
[2025-11-27 06:41:54] 2025-11-27 11:41:04,768 | INFO     | . stage-out = 8 s
[2025-11-27 06:41:54] 2025-11-27 11:41:04,768 | INFO     | . log creation = 1 s
[2025-11-27 06:41:54] 2025-11-27 11:41:04,768 | INFO     | ..............................
[2025-11-27 06:41:54] 2025-11-27 11:41:05,066 | INFO     | 
[2025-11-27 06:41:54] 2025-11-27 11:41:05,066 | INFO     | job summary report
[2025-11-27 06:41:54] 2025-11-27 11:41:05,066 | INFO     | --------------------------------------------------
[2025-11-27 06:41:54] 2025-11-27 11:41:05,066 | INFO     | PanDA job id: 6896297847
[2025-11-27 06:41:54] 2025-11-27 11:41:05,066 | INFO     | task id: 47556149
[2025-11-27 06:41:54] 2025-11-27 11:41:05,067 | INFO     | errors: (none)
[2025-11-27 06:41:54] 2025-11-27 11:41:05,067 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 06:41:54] 2025-11-27 11:41:05,067 | INFO     | pilot state: finished 
[2025-11-27 06:41:54] 2025-11-27 11:41:05,067 | INFO     | transexitcode: 0
[2025-11-27 06:41:54] 2025-11-27 11:41:05,067 | INFO     | exeerrorcode: 0
[2025-11-27 06:41:54] 2025-11-27 11:41:05,067 | INFO     | exeerrordiag: 
[2025-11-27 06:41:54] 2025-11-27 11:41:05,067 | INFO     | exitcode: 0
[2025-11-27 06:41:54] 2025-11-27 11:41:05,067 | INFO     | exitmsg: OK
[2025-11-27 06:41:54] 2025-11-27 11:41:05,067 | INFO     | cpuconsumptiontime: 261779 s
[2025-11-27 06:41:54] 2025-11-27 11:41:05,067 | INFO     | nevents: 1000
[2025-11-27 06:41:54] 2025-11-27 11:41:05,067 | INFO     | neventsw: 0
[2025-11-27 06:41:54] 2025-11-27 11:41:05,067 | INFO     | pid: 3197768
[2025-11-27 06:41:54] 2025-11-27 11:41:05,067 | INFO     | pgrp: 3197768
[2025-11-27 06:41:54] 2025-11-27 11:41:05,068 | INFO     | corecount: 8
[2025-11-27 06:41:54] 2025-11-27 11:41:05,068 | INFO     | event service: False
[2025-11-27 06:41:54] 2025-11-27 11:41:05,068 | INFO     | sizes: {0: 2284137, 1: 2284165, 2: 2284364, 13: 2284364, 24: 2284420, 32: 2284710, 35: 2284866, 81309: 2345797, 81319: 2354791, 81320: 2354847, 81339: 2355093}
[2025-11-27 06:41:54] 2025-11-27 11:41:05,068 | INFO     | --------------------------------------------------
[2025-11-27 06:41:54] 2025-11-27 11:41:05,068 | INFO     | 
[2025-11-27 06:41:54] 2025-11-27 11:41:05,068 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-11-27 06:41:54] 2025-11-27 11:41:05,188 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 06:41:54] 2025-11-27 11:41:05,189 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 06:41:54] 2025-11-27 11:41:05,189 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 06:41:54] 2025-11-27 11:41:05,189 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 06:41:54] 2025-11-27 11:41:05,189 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 06:41:54] 2025-11-27 11:41:05,189 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 06:41:54] 2025-11-27 11:41:05,189 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 06:41:54] 2025-11-27 11:41:05,189 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 06:41:54] 2025-11-27 11:41:05,189 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 06:41:54] 2025-11-27 11:41:05,189 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 06:41:54] 2025-11-27 11:41:05,189 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 06:41:54] 2025-11-27 11:41:05,189 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 06:41:54] 2025-11-27 11:41:05,189 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 06:41:54] 2025-11-27 11:41:05,190 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 06:41:54] 2025-11-27 11:41:05,190 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 06:41:54] 2025-11-27 11:41:05,190 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 06:41:54] 2025-11-27 11:41:05,190 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 06:41:54] 2025-11-27 11:41:05,190 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 06:41:54] 2025-11-27 11:41:05,190 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 06:41:54] 2025-11-27 11:41:05,190 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 06:41:54] 2025-11-27 11:41:05,190 | INFO     | job 6896297847 has completed (purged errors)
[2025-11-27 06:41:54] 2025-11-27 11:41:05,190 | INFO     | overall cleanup function is called
[2025-11-27 06:41:54] 2025-11-27 11:41:06,243 | INFO     | --- collectZombieJob: --- 10, [3197768]
[2025-11-27 06:41:54] 2025-11-27 11:41:06,243 | INFO     | zombie collector waiting for pid 3197768
[2025-11-27 06:41:54] 2025-11-27 11:41:06,243 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 06:41:54] 2025-11-27 11:41:06,243 | INFO     | collected zombie processes
[2025-11-27 06:41:54] 2025-11-27 11:41:06,243 | INFO     | will attempt to kill all subprocesses of pid=3197768
[2025-11-27 06:41:54] 2025-11-27 11:41:08,114 | INFO     | process IDs to be killed: [3197768] (in reverse order)
[2025-11-27 06:41:54] 2025-11-27 11:41:08,363 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 06:41:54] 2025-11-27 11:41:08,363 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 06:41:54] 2025-11-27 11:41:08,416 | INFO     | did not find any defunct processes belonging to 3197768
[2025-11-27 06:41:54] 2025-11-27 11:41:08,483 | INFO     | did not find any defunct processes belonging to 3197768
[2025-11-27 06:41:54] 2025-11-27 11:41:08,488 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 06:41:54] 2025-11-27 11:41:08,488 | INFO     | ready for new job
[2025-11-27 06:41:54] 2025-11-27 11:41:08,488 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 06:41:54] 2025-11-27 11:41:08,497 | INFO     | ***************************************
[2025-11-27 06:41:54] 2025-11-27 11:41:08,497 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 06:41:54] 2025-11-27 11:41:08,497 | INFO     | ***************************************
[2025-11-27 06:41:54] 2025-11-27 11:41:08,498 | INFO     | 
[2025-11-27 06:41:54] 2025-11-27 11:41:08,506 | INFO     | architecture information:
[2025-11-27 06:41:54] 2025-11-27 11:41:08,515 | INFO     | executing command: cat /etc/os-release
[2025-11-27 06:41:54] 2025-11-27 11:41:08,557 | INFO     | cat /etc/os-release:
[2025-11-27 06:41:54] NAME="CentOS Linux"
[2025-11-27 06:41:54] VERSION="7 (Core)"
[2025-11-27 06:41:54] ID="centos"
[2025-11-27 06:41:54] ID_LIKE="rhel fedora"
[2025-11-27 06:41:54] VERSION_ID="7"
[2025-11-27 06:41:54] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 06:41:54] ANSI_COLOR="0;31"
[2025-11-27 06:41:54] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 06:41:54] HOME_URL="https://www.centos.org/"
[2025-11-27 06:41:54] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 06:41:54] 
[2025-11-27 06:41:54] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 06:41:54] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 06:41:54] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 06:41:54] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 06:41:54] 
[2025-11-27 06:41:54] 2025-11-27 11:41:08,558 | INFO     | ***************************************
[2025-11-27 06:41:54] 2025-11-27 11:41:09,060 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-11-27 06:41:54] 2025-11-27 11:41:09,196 | INFO     | sufficient remaining disk space (98533638144 B)
[2025-11-27 06:41:54] 2025-11-27 11:41:09,197 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 06:41:54] 2025-11-27 11:41:09,197 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 06:41:54] 2025-11-27 11:41:09,197 | INFO     | update_server=False
[2025-11-27 06:41:54] 2025-11-27 11:41:09,197 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 06:41:54] 2025-11-27 11:41:09,198 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 06:41:54] 2025-11-27 11:41:09,198 | INFO     | aborting loop
[2025-11-27 06:41:54] 2025-11-27 11:41:09,401 | INFO     | all data control threads have been joined
[2025-11-27 06:41:54] 2025-11-27 11:41:10,110 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 06:41:54] 2025-11-27 11:41:10,203 | INFO     | [job] retrieve thread has finished
[2025-11-27 06:41:54] 2025-11-27 11:41:10,204 | INFO     | [job] job monitor thread has finished
[2025-11-27 06:41:54] 2025-11-27 11:41:10,309 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 06:41:54] 2025-11-27 11:41:10,340 | INFO     | all payload control threads have been joined
[2025-11-27 06:41:54] 2025-11-27 11:41:10,407 | INFO     | [data] control thread has finished
[2025-11-27 06:41:54] 2025-11-27 11:41:10,522 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 06:41:54] 2025-11-27 11:41:10,522 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 06:41:54] 2025-11-27 11:41:10,673 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 06:41:54] 2025-11-27 11:41:10,744 | INFO     | [payload] failed_post thread has finished
[2025-11-27 06:41:54] 2025-11-27 11:41:10,886 | INFO     | all job control threads have been joined
[2025-11-27 06:41:54] 2025-11-27 11:41:11,027 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 06:41:54] 2025-11-27 11:41:11,036 | INFO     | [job] validate thread has finished
[2025-11-27 06:41:54] 2025-11-27 11:41:11,116 | INFO     | [job] queue monitor thread has finished
[2025-11-27 06:41:54] 2025-11-27 11:41:11,183 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 06:41:54] 2025-11-27 11:41:11,193 | INFO     | [payload] validate_post thread has finished
[2025-11-27 06:41:54] 2025-11-27 11:41:11,346 | INFO     | [payload] control thread has finished
[2025-11-27 06:41:54] 2025-11-27 11:41:11,435 | INFO     | [data] copytool_in thread has finished
[2025-11-27 06:41:54] 2025-11-27 11:41:11,899 | INFO     | [job] control thread has finished
[2025-11-27 06:41:54] 2025-11-27 11:41:12,316 | INFO     | [data] copytool_out thread has finished
[2025-11-27 06:41:54] 2025-11-27 11:41:14,712 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 06:41:54] 2025-11-27 11:41:46,923 | INFO     | [monitor] cgroup control has ended
[2025-11-27 06:41:54] 2025-11-27 11:41:47,418 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140208355702592)>', '<ExcThread(monitor, started 140207697409792)>']
[2025-11-27 06:41:54] 2025-11-27 11:41:47,672 | INFO     | PID=3181015 has CPU usage=3.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 06:41:54] 2025-11-27 11:41:47,672 | INFO     | .. there are 75 such processes running
[2025-11-27 06:41:54] 2025-11-27 11:41:47,673 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 06:41:54] 2025-11-27 11:41:47,673 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 06:41:54] 2025-11-27 11:41:47,673 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 06:41:54] 2025-11-27 11:41:47,673 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 06:41:54] 2025-11-27 11:41:47,673 | INFO     | [monitor] control thread has ended
[2025-11-27 06:41:54] 2025-11-27 11:41:52,444 | INFO     | all workflow threads have been joined
[2025-11-27 06:41:54] 2025-11-27 11:41:52,444 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 06:41:54] 2025-11-27 11:41:52,444 | INFO     | traces error code: 0
[2025-11-27 06:41:54] 2025-11-27 11:41:52,444 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 06:41:54] 2025-11-27 11:41:53,034 [wrapper] ==== pilot stdout END ====
[2025-11-27 06:41:54] 2025-11-27 11:41:53,041 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 06:41:54] 2025-11-27 11:41:53,057 [wrapper] pilotpid: 3181015
[2025-11-27 06:41:54] 2025-11-27 11:41:53,070 [wrapper] Pilot exit status: 0
[2025-11-27 06:41:54] 2025-11-27 11:41:53,137 [wrapper] pandaids: 6896297847
[2025-11-27 06:41:54] 2025-11-27 11:41:53,780 [wrapper] cleanup supervisor_pilot 3915452 3181016
[2025-11-27 06:41:54] 2025-11-27 11:41:53,805 [wrapper] Test setup, not cleaning
[2025-11-27 06:41:54] 2025-11-27 11:41:53,823 [wrapper] apfmon messages muted
[2025-11-27 06:41:54] 2025-11-27 11:41:53,842 [wrapper] ==== wrapper stdout END ====
[2025-11-27 06:41:54] 2025-11-27 11:41:53,857 [wrapper] ==== wrapper stderr END ====
[2025-11-27 06:41:54]  *** Error codes and diagnostics ***
[2025-11-27 06:41:54]     "exeErrorCode": 0,
[2025-11-27 06:41:54]     "exeErrorDiag": "",
[2025-11-27 06:41:54]     "pilotErrorCode": 0,
[2025-11-27 06:41:54]     "pilotErrorDiag": "",
[2025-11-27 06:41:54]  *** Listing of results directory ***
[2025-11-27 06:41:54] total 1325436
[2025-11-27 06:41:54] -rw-r--r--. 1 boincer umatlas    576529 Nov 24 20:13 pilot3.tar.gz
[2025-11-27 06:41:54] -rwx------. 1 boincer umatlas     36292 Nov 24 20:26 runpilot2-wrapper.sh
[2025-11-27 06:41:54] -rw-r--r--. 1 boincer umatlas      5112 Nov 24 20:26 queuedata.json
[2025-11-27 06:41:54] -rw-r--r--. 1 boincer umatlas       100 Nov 26 08:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 06:41:54] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 08:03 run_atlas
[2025-11-27 06:41:54] -rw-r--r--. 1 boincer umatlas       105 Nov 26 08:03 job.xml
[2025-11-27 06:41:54] -rw-r--r--. 2 boincer umatlas 409002190 Nov 26 08:03 EVNT.47483658._001472.pool.root.1
[2025-11-27 06:41:54] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 08:03 start_atlas.sh
[2025-11-27 06:41:54] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 08:03 shared
[2025-11-27 06:41:54] -rw-r--r--. 2 boincer umatlas    590103 Nov 26 08:03 input.tar.gz
[2025-11-27 06:41:54] -rw-r--r--. 1 boincer umatlas         0 Nov 26 08:03 boinc_lockfile
[2025-11-27 06:41:54] -rw-r--r--. 1 boincer umatlas      2782 Nov 26 08:03 pandaJob.out
[2025-11-27 06:41:54] -rw-------. 1 boincer umatlas        57 Nov 26 08:03 setup.sh.local
[2025-11-27 06:41:54] -rw-------. 1 boincer umatlas    991830 Nov 26 08:04 agis_schedconf.cvmfs.json
[2025-11-27 06:41:54] drwx------. 5 boincer umatlas      4096 Nov 26 08:04 pilot3
[2025-11-27 06:41:54] -rw-r--r--. 1 boincer umatlas       533 Nov 27 06:14 boinc_task_state.xml
[2025-11-27 06:41:54] -rw-r--r--. 1 boincer umatlas      6842 Nov 27 06:37 init_data.xml
[2025-11-27 06:41:54] -rw-------. 1 boincer umatlas 920524514 Nov 27 06:39 HITS.47556149._004581.pool.root.1
[2025-11-27 06:41:54] -rw-------. 1 boincer umatlas      1058 Nov 27 06:40 memory_monitor_summary.json
[2025-11-27 06:41:54] -rw-------. 1 boincer umatlas   1516240 Nov 27 06:40 agis_ddmendpoints.agis.ALL.json
[2025-11-27 06:41:54] -rw-------. 1 boincer umatlas   2345951 Nov 27 06:40 log.47556149._004581.job.log.tgz.1
[2025-11-27 06:41:54] -rw-------. 1 boincer umatlas      8609 Nov 27 06:41 heartbeat.json
[2025-11-27 06:41:54] -rw-------. 1 boincer umatlas        95 Nov 27 06:41 pilot_heartbeat.json
[2025-11-27 06:41:54] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 06:41 boinc_mmap_file
[2025-11-27 06:41:54] -rw-r--r--. 1 boincer umatlas        29 Nov 27 06:41 wrapper_checkpoint.txt
[2025-11-27 06:41:54] -rw-------. 1 boincer umatlas      4824 Nov 27 06:41 pilotlog.txt
[2025-11-27 06:41:54] -rw-------. 1 boincer umatlas   9552361 Nov 27 06:41 log.47556149._004581.job.log.1
[2025-11-27 06:41:54] -rw-------. 1 boincer umatlas       353 Nov 27 06:41 output.list
[2025-11-27 06:41:54] -rw-r--r--. 1 boincer umatlas       620 Nov 27 06:41 runtime_log
[2025-11-27 06:41:54] -rw-------. 1 boincer umatlas  11919360 Nov 27 06:41 result.tar.gz
[2025-11-27 06:41:54] -rw-------. 1 boincer umatlas       657 Nov 27 06:41 Z5NKDmY0wh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDml2LKDmDbHlxn.diag
[2025-11-27 06:41:54] -rw-r--r--. 1 boincer umatlas      9328 Nov 27 06:41 runtime_log.err
[2025-11-27 06:41:54] -rw-r--r--. 1 boincer umatlas     21595 Nov 27 06:41 stderr.txt
[2025-11-27 06:41:54] HITS file was successfully produced:
[2025-11-27 06:41:54] -rw-------. 1 boincer umatlas 920524514 Nov 27 06:39 shared/HITS.pool.root.1
[2025-11-27 06:41:54]  *** Contents of shared directory: ***
[2025-11-27 06:41:54] total 1310612
[2025-11-27 06:41:54] -rw-r--r--. 2 boincer umatlas 409002190 Nov 26 08:03 ATLAS.root_0
[2025-11-27 06:41:54] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 08:03 start_atlas.sh
[2025-11-27 06:41:54] -rw-r--r--. 2 boincer umatlas    590103 Nov 26 08:03 input.tar.gz
[2025-11-27 06:41:54] -rw-------. 1 boincer umatlas 920524514 Nov 27 06:39 HITS.pool.root.1
[2025-11-27 06:41:54] -rw-------. 1 boincer umatlas  11919360 Nov 27 06:41 result.tar.gz
06:41:56 (3176390): run_atlas exited; CPU time 266333.971681
06:41:56 (3176390): called boinc_finish(0)

</stderr_txt>
]]>

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