Stderr output

<core_client_version>8.2.6</core_client_version>
<![CDATA[
<stderr_txt>
2025-11-26 18:50:59 (1054227): vboxwrapper version 26210
2025-11-26 18:50:59 (1054227): BOINC client version: 8.2.6
2025-11-26 18:50:59 (1054227): Detected: VirtualBox VboxManage Interface (Version: 7.1.14)
2025-11-26 18:50:59 (1054227): Successfully copied 'init_data.xml' to the shared directory.
2025-11-26 18:50:59 (1054227): Create VM. (boinc_78ae70ebcffb7fe0, slot#9)
2025-11-26 18:50:59 (1054227): Setting Memory Size for VM. (4400MB)
2025-11-26 18:50:59 (1054227): Setting CPU Count for VM. (4)
2025-11-26 18:50:59 (1054227): Setting Chipset Options for VM.
2025-11-26 18:50:59 (1054227): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-11-26 18:50:59 (1054227): Setting Boot Options for VM.
2025-11-26 18:50:59 (1054227): Setting Network Configuration for NAT. (Driver: virtio)
2025-11-26 18:50:59 (1054227): Enabling VM Network Access.
2025-11-26 18:50:59 (1054227): Disabling USB Support for VM.
2025-11-26 18:50:59 (1054227): Disabling COM Port Support for VM.
2025-11-26 18:50:59 (1054227): Disabling LPT Port Support for VM.
2025-11-26 18:50:59 (1054227): Disabling Audio Support for VM.
2025-11-26 18:50:59 (1054227): Disabling Clipboard Support for VM.
2025-11-26 18:50:59 (1054227): Disabling Drag and Drop Support for VM.
2025-11-26 18:50:59 (1054227): Adding storage controller(s) to VM.
2025-11-26 18:50:59 (1054227): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-11-26 18:51:00 (1054227): Adding VirtualBox Guest Additions to VM.
2025-11-26 18:51:00 (1054227): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-11-26 18:51:00 (1054227): forwarding host port 42963 to guest port 80
2025-11-26 18:51:00 (1054227): Enabling remote desktop for VM.
2025-11-26 18:51:00 (1054227): Required extension pack not installed, remote desktop not enabled.
2025-11-26 18:51:00 (1054227): Enabling shared directory for VM.
2025-11-26 18:51:00 (1054227): Starting VM using VBoxManage interface. (boinc_78ae70ebcffb7fe0, slot#9)
2025-11-26 18:51:01 (1054227): Successfully started VM. (PID = '1054839')
2025-11-26 18:51:01 (1054227): Reporting VM Process ID to BOINC.
2025-11-26 18:51:01 (1054227): Guest Log: BIOS: VirtualBox 7.1.14
2025-11-26 18:51:01 (1054227): Guest Log: CPUID EDX: 0x178bfbff
2025-11-26 18:51:01 (1054227): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-11-26 18:51:01 (1054227): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-11-26 18:51:01 (1054227): VM state change detected. (old = 'poweredoff', new = 'running')
2025-11-26 18:51:01 (1054227): Detected: Web Application Enabled (http://localhost:42963)
2025-11-26 18:51:01 (1054227): Preference change detected
2025-11-26 18:51:01 (1054227): Setting CPU throttle for VM. (60%)
2025-11-26 18:51:01 (1054227): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-11-26 18:51:03 (1054227): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-11-26 18:51:03 (1054227): Guest Log: BIOS: Booting from Hard Disk...
2025-11-26 18:51:06 (1054227): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-11-26 18:51:06 (1054227): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-11-26 18:51:06 (1054227): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-11-26 18:51:06 (1054227): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-11-26 18:51:06 (1054227): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-11-26 18:51:06 (1054227): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-11-26 18:51:06 (1054227): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-11-26 18:51:06 (1054227): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-11-26 18:51:06 (1054227): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-11-26 18:51:06 (1054227): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-11-26 18:51:06 (1054227): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-11-26 18:51:06 (1054227): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-11-26 18:51:06 (1054227): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-11-26 18:51:06 (1054227): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-11-26 18:51:06 (1054227): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-11-26 18:51:06 (1054227): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-11-26 18:51:06 (1054227): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-11-26 18:51:06 (1054227): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-11-26 18:51:06 (1054227): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-11-26 18:51:06 (1054227): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-11-26 18:51:06 (1054227): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-11-26 18:51:06 (1054227): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-11-26 18:51:06 (1054227): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-11-26 18:51:06 (1054227): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-11-26 18:51:06 (1054227): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-11-26 18:51:06 (1054227): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-11-26 18:51:06 (1054227): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-11-26 18:51:06 (1054227): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-11-26 18:51:06 (1054227): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-11-26 18:51:06 (1054227): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-11-26 18:51:06 (1054227): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-11-26 18:51:06 (1054227): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-11-26 18:51:14 (1054227): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-11-26 18:51:14 (1054227): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-11-26 18:51:20 (1054227): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-11-26 18:51:20 (1054227): Guest Log: 00:00:00.000141 main     Log opened 2025-11-26T17:51:17.945351000Z
2025-11-26 18:51:20 (1054227): Guest Log: 00:00:00.000222 main     OS Product: Linux
2025-11-26 18:51:20 (1054227): Guest Log: 00:00:00.000239 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-11-26 18:51:20 (1054227): Guest Log: 00:00:00.000252 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-11-26 18:51:20 (1054227): Guest Log: 00:00:00.000265 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-11-26 18:51:20 (1054227): Guest Log: 00:00:00.000266 main     Process ID: 1308
2025-11-26 18:51:20 (1054227): Guest Log: 00:00:00.000266 main     Package type: LINUX_64BITS_GENERIC
2025-11-26 18:51:20 (1054227): Guest Log: 00:00:00.000961 main     5.2.32 r132073 started. Verbose level = 0
2025-11-26 18:51:20 (1054227): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-11-26 18:51:20 (1054227): Guest Log: [INFO] Mounting shared directory
2025-11-26 18:51:20 (1054227): Guest Log: [INFO] Checking for init_data.xml
2025-11-26 18:51:22 (1054227): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-11-26 18:51:22 (1054227): Guest Log: [INFO] Detected branch: prod
2025-11-26 18:51:22 (1054227): Guest Log: This is the prod version of the ATLAS job wrapper
2025-11-26 18:51:22 (1054227): Guest Log: Copying input files
2025-11-26 18:51:24 (1054227): Guest Log: Copied input files into RunAtlas.
2025-11-26 18:51:24 (1054227): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-11-26 18:51:24 (1054227): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-11-26 18:51:24 (1054227): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-11-26 18:51:24 (1054227): Guest Log: Further information can be found at the LHC@home message board.
2025-11-26 18:51:32 (1054227): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-11-26 18:51:32 (1054227): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-11-26 18:51:32 (1054227): Guest Log: 2.6.3.0 1584 0 30188 153330 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-11-26 18:51:33 (1054227): Guest Log: copied the webapp to /var/www
2025-11-26 18:51:33 (1054227): Guest Log: ATHENA_PROC_NUMBER=4
2025-11-26 18:51:33 (1054227): Guest Log: ATHENA_CORE_NUMBER=4
2025-11-26 18:51:33 (1054227): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-11-26 18:51:33 (1054227): Guest Log:  *** Starting ATLAS job. (PandaID=6894238313 taskID=47523675) ***
2025-11-26 20:30:02 (1054227): Status Report: Elapsed Time: '6000.000000'
2025-11-26 20:30:02 (1054227): Status Report: CPU Time: '13260.220000'
2025-11-26 22:09:03 (1054227): Status Report: Elapsed Time: '12000.000000'
2025-11-26 22:09:03 (1054227): Status Report: CPU Time: '28009.860000'
2025-11-26 23:48:04 (1054227): Status Report: Elapsed Time: '18000.000000'
2025-11-26 23:48:04 (1054227): Status Report: CPU Time: '42744.540000'
2025-11-27 01:25:50 (1054227): Guest Log:  *** Job finished ***
2025-11-27 01:25:50 (1054227): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-11-27 01:25:50 (1054227): Guest Log: 2025-11-27 00:25:47,409 | INFO     | all workflow threads have been joined
2025-11-27 01:25:50 (1054227): Guest Log: 2025-11-27 00:25:47,410 | INFO     | end of generic workflow (traces error code: 0)
2025-11-27 01:25:50 (1054227): Guest Log: 2025-11-27 00:25:47,410 | INFO     | traces error code: 0
2025-11-27 01:25:50 (1054227): Guest Log: 2025-11-27 00:25:47,410 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-11-27 01:25:50 (1054227): Guest Log: 2025-11-27 00:25:49,265 | INFO     | PID=5988 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE -z -t
2025-11-27 01:25:50 (1054227): Guest Log: 2025-11-27 00:25:49,265 | INFO     | found 0 job(s) in 20 queues
2025-11-27 01:25:50 (1054227): Guest Log: 2025-11-27 00:25:49,265 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-11-27 01:25:50 (1054227): Guest Log: 2025-11-27 00:25:49,266 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-11-27 01:25:50 (1054227): Guest Log: 2025-11-27 00:25:49,266 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-11-27 01:25:50 (1054227): Guest Log: 2025-11-27 00:25:49,266 | INFO     | [monitor] control thread has ended
2025-11-27 01:25:50 (1054227): Guest Log: 2025-11-27 00:25:49,386 [wrapper] ==== pilot stdout END ====
2025-11-27 01:25:50 (1054227): Guest Log: 2025-11-27 00:25:49,390 [wrapper] ==== wrapper stdout RESUME ====
2025-11-27 01:25:50 (1054227): Guest Log: 2025-11-27 00:25:49,395 [wrapper] pilotpid: 5988
2025-11-27 01:25:50 (1054227): Guest Log: 2025-11-27 00:25:49,400 [wrapper] Pilot exit status: 0
2025-11-27 01:25:50 (1054227): Guest Log: 2025-11-27 00:25:49,476 [wrapper] pandaids: 6894238313
2025-11-27 01:25:50 (1054227): Guest Log: 2025-11-27 00:25:49,501 [wrapper] cleanup supervisor_pilot 26594 5989
2025-11-27 01:25:50 (1054227): Guest Log: 2025-11-27 00:25:49,505 [wrapper] Test setup, not cleaning
2025-11-27 01:25:50 (1054227): Guest Log: 2025-11-27 00:25:49,508 [wrapper] apfmon messages muted
2025-11-27 01:25:50 (1054227): Guest Log: 2025-11-27 00:25:49,512 [wrapper] ==== wrapper stdout END ====
2025-11-27 01:25:50 (1054227): Guest Log: 2025-11-27 00:25:49,516 [wrapper] ==== wrapper stderr END ====
2025-11-27 01:25:50 (1054227): Guest Log:  *** Error codes and diagnostics ***
2025-11-27 01:25:50 (1054227): Guest Log:     "exeErrorCode": 0,
2025-11-27 01:25:50 (1054227): Guest Log:     "exeErrorDiag": "",
2025-11-27 01:25:50 (1054227): Guest Log:     "pilotErrorCode": 0,
2025-11-27 01:25:50 (1054227): Guest Log:     "pilotErrorDiag": "",
2025-11-27 01:25:50 (1054227): Guest Log:  *** Listing of results directory ***
2025-11-27 01:25:50 (1054227): Guest Log: total 347092
2025-11-27 01:25:50 (1054227): Guest Log: -rw-r--r--. 1 atlas atlas    576529 Nov 25 04:09 pilot3.tar.gz
2025-11-27 01:25:50 (1054227): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Nov 25 04:38 queuedata.json
2025-11-27 01:25:50 (1054227): Guest Log: -rwx------. 1 atlas atlas     36292 Nov 25 04:38 runpilot2-wrapper.sh
2025-11-27 01:25:50 (1054227): Guest Log: -rw-r--r--. 1 atlas atlas      9264 Nov 26 17:51 init_data.xml
2025-11-27 01:25:50 (1054227): Guest Log: -rw-r--r--. 1 atlas atlas     15847 Nov 26 17:51 start_atlas.sh
2025-11-27 01:25:50 (1054227): Guest Log: -rw-r--r--. 1 atlas atlas    589942 Nov 26 17:51 input.tar.gz
2025-11-27 01:25:50 (1054227): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Nov 26 17:51 EVNT.47523673._000004.pool.root.1 -> /data/./ATLAS.root_0
2025-11-27 01:25:50 (1054227): Guest Log: -rw-r--r--. 1 atlas atlas      2613 Nov 26 17:51 pandaJob.out
2025-11-27 01:25:50 (1054227): Guest Log: -rw-------. 1 atlas atlas    991530 Nov 26 17:52 agis_schedconf.cvmfs.json
2025-11-27 01:25:50 (1054227): Guest Log: drwx------. 5 atlas atlas      4096 Nov 26 17:52 pilot3
2025-11-27 01:25:50 (1054227): Guest Log: -rw-------. 1 atlas atlas 344885596 Nov 27 00:24 HITS.47523675._000093.pool.root.1
2025-11-27 01:25:50 (1054227): Guest Log: -rw-------. 1 atlas atlas      1030 Nov 27 00:25 memory_monitor_summary.json
2025-11-27 01:25:50 (1054227): Guest Log: -rw-------. 1 atlas atlas   1516240 Nov 27 00:25 agis_ddmendpoints.agis.ALL.json
2025-11-27 01:25:50 (1054227): Guest Log: -rw-------. 1 atlas atlas    507554 Nov 27 00:25 log.47523675._000093.job.log.tgz.1
2025-11-27 01:25:50 (1054227): Guest Log: -rw-------. 1 atlas atlas        95 Nov 27 00:25 pilot_heartbeat.json
2025-11-27 01:25:50 (1054227): Guest Log: -rw-------. 1 atlas atlas      7773 Nov 27 00:25 heartbeat.json
2025-11-27 01:25:50 (1054227): Guest Log: -rw-------. 1 atlas atlas       744 Nov 27 00:25 pilotlog.txt
2025-11-27 01:25:50 (1054227): Guest Log: -rw-------. 1 atlas atlas   2839738 Nov 27 00:25 log.47523675._000093.job.log.1
2025-11-27 01:25:50 (1054227): Guest Log: -rw-------. 1 atlas atlas       357 Nov 27 00:25 output.list
2025-11-27 01:25:50 (1054227): Guest Log: -rw-r--r--. 1 atlas atlas       620 Nov 27 00:25 runtime_log
2025-11-27 01:25:50 (1054227): Guest Log: -rw-------. 1 atlas atlas   3368960 Nov 27 00:25 result.tar.gz
2025-11-27 01:25:50 (1054227): Guest Log: -rw-r--r--. 1 atlas atlas      8734 Nov 27 00:25 runtime_log.err
2025-11-27 01:25:50 (1054227): Guest Log: -rw-------. 1 atlas atlas       657 Nov 27 00:25 NGRODmX0zh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmaKJKDmm8EWYo.diag
2025-11-27 01:25:50 (1054227): Guest Log: Looking for outputfile HITS.47523675._000093.pool.root.1
2025-11-27 01:25:50 (1054227): Guest Log: HITS file was successfully produced
2025-11-27 01:25:50 (1054227): Guest Log: -rw-------. 1 atlas atlas 344885596 Nov 27 00:24 /home/atlas/RunAtlas/HITS.47523675._000093.pool.root.1
2025-11-27 01:25:51 (1054227): Guest Log: Successfully finished the ATLAS job!
2025-11-27 01:25:51 (1054227): Guest Log: Copying the results back to the shared directory!
2025-11-27 01:25:51 (1054227): Guest Log:  *** Contents of shared directory: ***
2025-11-27 01:25:51 (1054227): Guest Log: total 279732
2025-11-27 01:25:51 (1054227): Guest Log: -rw-r--r--. 1 root root 282444322 Nov 26 17:50 ATLAS.root_0
2025-11-27 01:25:51 (1054227): Guest Log: -rw-r--r--. 1 root root      9264 Nov 26 17:50 init_data.xml
2025-11-27 01:25:51 (1054227): Guest Log: -rw-r--r--. 1 root root    589942 Nov 26 17:50 input.tar.gz
2025-11-27 01:25:51 (1054227): Guest Log: -rw-r--r--. 1 root root   3368960 Nov 27 00:25 result.tar.gz
2025-11-27 01:25:51 (1054227): Guest Log: -rw-r--r--. 1 root root     15847 Nov 26 17:50 start_atlas.sh
2025-11-27 01:25:51 (1054227): Guest Log:  *** Success! Shutting down the machine. ***
2025-11-27 01:25:51 (1054227): VM Completion File Detected.
2025-11-27 01:25:51 (1054227): Powering off VM.
2025-11-27 01:25:51 (1054227): Successfully stopped VM.
2025-11-27 01:25:51 (1054227): Deregistering VM. (boinc_78ae70ebcffb7fe0, slot#9)
2025-11-27 01:25:51 (1054227): Removing network bandwidth throttle group from VM.
2025-11-27 01:25:51 (1054227): Removing VM from VirtualBox.
2025-11-27 01:25:56 (1054227): called boinc_finish(0)

</stderr_txt>
]]>

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