Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
07:43:48 (563086): wrapper (7.7.26015): starting
07:43:48 (563086): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 07:43:48] Arguments: --nthreads 8
[2025-11-26 07:43:48] Threads: 8
[2025-11-26 07:43:48] Checking for CVMFS
[2025-11-26 07:43:49] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 07:43:49] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 07:43:49] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 07:43:50] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 07:43:50] 2.13.3.0 9438 30043 264184 153322 2 709 20995541 40960000 67429 16776704 0 412829153 99.749 254375023 48122 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 07:43:50] CVMFS is ok
[2025-11-26 07:43:50] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 07:43:50] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 07:43:50] Further information can be found at the LHC@home message board.
[2025-11-26 07:43:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 07:43:50] Checking for apptainer binary...
[2025-11-26 07:43:50] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 07:43:50] Running /usr/bin/apptainer --version
[2025-11-26 07:43:50] apptainer version 1.4.4-1.el9
[2025-11-26 07:43:50] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 07:43:50] c8-7-3.aglt2.org
[2025-11-26 07:43:50] apptainer works
[2025-11-26 07:43:50] Set ATHENA_PROC_NUMBER=8
[2025-11-26 07:43:50] Set ATHENA_CORE_NUMBER=8
[2025-11-26 07:43:50] Starting ATLAS job with PandaID=6896451229
[2025-11-26 07:43:50] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 15:33:37]  *** The last 200 lines of the pilot log: ***
[2025-11-26 15:33:37] 2025-11-26 20:32:59,683 | INFO     | monitor loop #1586: job 0:6896451229 is in state 'finished'
[2025-11-26 15:33:37] 2025-11-26 20:32:59,683 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 15:33:37] 2025-11-26 20:33:01,345 | INFO     | time since job start (28108s) is within the limit (172800.0s)
[2025-11-26 15:33:37] 2025-11-26 20:33:01,933 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-26 15:33:37] 2025-11-26 20:33:01,952 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3800.1244687499993
[2025-11-26 15:33:37] 2025-11-26 20:33:01,977 | INFO     | using path: /tmp/boinchome/slots/6/PanDA_Pilot-6896451229/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 15:33:37] 2025-11-26 20:33:01,978 | INFO     | extracted standard info from prmon json
[2025-11-26 15:33:37] 2025-11-26 20:33:01,978 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 15:33:37] 2025-11-26 20:33:01,978 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 15:33:37] 2025-11-26 20:33:01,986 | INFO     | fitting pss+swap vs Time
[2025-11-26 15:33:37] 2025-11-26 20:33:01,987 | INFO     | sum of square deviations: 29985832415.92129
[2025-11-26 15:33:37] 2025-11-26 20:33:02,008 | INFO     | sum of deviations: 295154253468.5424
[2025-11-26 15:33:37] 2025-11-26 20:33:02,008 | INFO     | mean x: 1764175134.7908497
[2025-11-26 15:33:37] 2025-11-26 20:33:02,008 | INFO     | mean y: 2861229.891067538
[2025-11-26 15:33:37] 2025-11-26 20:33:02,008 | INFO     | intersect: -17362132600.344753
[2025-11-26 15:33:37] 2025-11-26 20:33:02,008 | INFO     | chi2: 6.73753355020464
[2025-11-26 15:33:37] 2025-11-26 20:33:02,009 | INFO     | sum of square deviations: 29016650535.259872
[2025-11-26 15:33:37] 2025-11-26 20:33:02,011 | INFO     | sum of deviations: 454783713763.51544
[2025-11-26 15:33:37] 2025-11-26 20:33:02,012 | INFO     | mean x: 1764174982.2995594
[2025-11-26 15:33:37] 2025-11-26 20:33:02,012 | INFO     | mean y: 2886349.577092511
[2025-11-26 15:33:37] 2025-11-26 20:33:02,012 | INFO     | intersect: -27647377736.001392
[2025-11-26 15:33:37] 2025-11-26 20:33:02,012 | INFO     | chi2: 3.338313883610632
[2025-11-26 15:33:37] 2025-11-26 20:33:02,012 | INFO     | current chi2=3.338313883610632 (change=50.45198871760368 %)
[2025-11-26 15:33:37] 2025-11-26 20:33:02,012 | INFO     | sum of square deviations: 28068585329.52779
[2025-11-26 15:33:37] 2025-11-26 20:33:02,015 | INFO     | sum of deviations: 504596128922.9087
[2025-11-26 15:33:37] 2025-11-26 20:33:02,015 | INFO     | mean x: 1764174829.8084633
[2025-11-26 15:33:37] 2025-11-26 20:33:02,015 | INFO     | mean y: 2894332.7082405346
[2025-11-26 15:33:37] 2025-11-26 20:33:02,015 | INFO     | intersect: -31712127262.202972
[2025-11-26 15:33:37] 2025-11-26 20:33:02,015 | INFO     | chi2: 2.790519815135445
[2025-11-26 15:33:37] 2025-11-26 20:33:02,015 | INFO     | current chi2=2.790519815135445 (change=16.409303845410346 %)
[2025-11-26 15:33:37] 2025-11-26 20:33:02,015 | INFO     | right removable region: 448
[2025-11-26 15:33:37] 2025-11-26 20:33:02,016 | INFO     | sum of square deviations: 29016456860.85683
[2025-11-26 15:33:37] 2025-11-26 20:33:02,018 | INFO     | sum of deviations: 157924894499.61218
[2025-11-26 15:33:37] 2025-11-26 20:33:02,018 | INFO     | mean x: 1764175287.2973568
[2025-11-26 15:33:37] 2025-11-26 20:33:02,019 | INFO     | mean y: 2882769.3436123347
[2025-11-26 15:33:37] 2025-11-26 20:33:02,019 | INFO     | intersect: -9598813173.798878
[2025-11-26 15:33:37] 2025-11-26 20:33:02,019 | INFO     | chi2: 4.108542200488849
[2025-11-26 15:33:37] 2025-11-26 20:33:02,019 | INFO     | current chi2=4.108542200488849 (change=39.020085467862934 %)
[2025-11-26 15:33:37] 2025-11-26 20:33:02,019 | INFO     | sum of square deviations: 28068253491.959976
[2025-11-26 15:33:37] 2025-11-26 20:33:02,022 | INFO     | sum of deviations: 131439943089.16519
[2025-11-26 15:33:37] 2025-11-26 20:33:02,022 | INFO     | mean x: 1764175439.7995546
[2025-11-26 15:33:37] 2025-11-26 20:33:02,022 | INFO     | mean y: 2887024.824053452
[2025-11-26 15:33:37] 2025-11-26 20:33:02,022 | INFO     | intersect: -8258514756.835724
[2025-11-26 15:33:37] 2025-11-26 20:33:02,022 | INFO     | chi2: 4.061517756858943
[2025-11-26 15:33:37] 2025-11-26 20:33:02,022 | INFO     | current chi2=4.061517756858943 (change=1.1445530150405028 %)
[2025-11-26 15:33:37] 2025-11-26 20:33:02,022 | INFO     | left removable region: 20
[2025-11-26 15:33:37] 2025-11-26 20:33:02,023 | INFO     | sum of square deviations: 24311495405.147144
[2025-11-26 15:33:37] 2025-11-26 20:33:02,025 | INFO     | sum of deviations: 300099082267.72437
[2025-11-26 15:33:37] 2025-11-26 20:33:02,025 | INFO     | mean x: 1764175409.3200934
[2025-11-26 15:33:37] 2025-11-26 20:33:02,025 | INFO     | mean y: 2927848.8925233646
[2025-11-26 15:33:37] 2025-11-26 20:33:02,025 | INFO     | intersect: -21773907038.20202
[2025-11-26 15:33:37] 2025-11-26 20:33:02,025 | INFO     | chi2: 0.038485639729236555
[2025-11-26 15:33:37] 2025-11-26 20:33:02,026 | INFO     | current memory leak: 12.34 B/s (using 428 data points, chi2=0.04)
[2025-11-26 15:33:37] 2025-11-26 20:33:02,026 | INFO     | could have reported an average CPU frequency of 3800 MHz (19 samples)
[2025-11-26 15:33:37] 2025-11-26 20:33:02,026 | INFO     | ..............................
[2025-11-26 15:33:37] 2025-11-26 20:33:02,026 | INFO     | . Timing measurements:
[2025-11-26 15:33:37] 2025-11-26 20:33:02,026 | INFO     | . get job = 0 s
[2025-11-26 15:33:37] 2025-11-26 20:33:02,026 | INFO     | . initial setup = 3 s
[2025-11-26 15:33:37] 2025-11-26 20:33:02,026 | INFO     | . payload setup = 27 s
[2025-11-26 15:33:37] 2025-11-26 20:33:02,026 | INFO     | . stage-in = 0 s
[2025-11-26 15:33:37] 2025-11-26 20:33:02,026 | INFO     | . payload execution = 27989 s
[2025-11-26 15:33:37] 2025-11-26 20:33:02,026 | INFO     | . stage-out = 6 s
[2025-11-26 15:33:37] 2025-11-26 20:33:02,026 | INFO     | . log creation = 1 s
[2025-11-26 15:33:37] 2025-11-26 20:33:02,027 | INFO     | ..............................
[2025-11-26 15:33:37] 2025-11-26 20:33:02,105 | INFO     | 
[2025-11-26 15:33:37] 2025-11-26 20:33:02,105 | INFO     | job summary report
[2025-11-26 15:33:37] 2025-11-26 20:33:02,105 | INFO     | --------------------------------------------------
[2025-11-26 15:33:37] 2025-11-26 20:33:02,105 | INFO     | PanDA job id: 6896451229
[2025-11-26 15:33:37] 2025-11-26 20:33:02,105 | INFO     | task id: 47556161
[2025-11-26 15:33:37] 2025-11-26 20:33:02,105 | INFO     | errors: (none)
[2025-11-26 15:33:37] 2025-11-26 20:33:02,105 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 15:33:37] 2025-11-26 20:33:02,105 | INFO     | pilot state: finished 
[2025-11-26 15:33:37] 2025-11-26 20:33:02,105 | INFO     | transexitcode: 0
[2025-11-26 15:33:37] 2025-11-26 20:33:02,105 | INFO     | exeerrorcode: 0
[2025-11-26 15:33:37] 2025-11-26 20:33:02,105 | INFO     | exeerrordiag: 
[2025-11-26 15:33:37] 2025-11-26 20:33:02,105 | INFO     | exitcode: 0
[2025-11-26 15:33:37] 2025-11-26 20:33:02,105 | INFO     | exitmsg: OK
[2025-11-26 15:33:37] 2025-11-26 20:33:02,105 | INFO     | cpuconsumptiontime: 135641 s
[2025-11-26 15:33:37] 2025-11-26 20:33:02,105 | INFO     | nevents: 1000
[2025-11-26 15:33:37] 2025-11-26 20:33:02,105 | INFO     | neventsw: 0
[2025-11-26 15:33:37] 2025-11-26 20:33:02,105 | INFO     | pid: 647465
[2025-11-26 15:33:37] 2025-11-26 20:33:02,106 | INFO     | pgrp: 647465
[2025-11-26 15:33:37] 2025-11-26 20:33:02,106 | INFO     | corecount: 8
[2025-11-26 15:33:37] 2025-11-26 20:33:02,106 | INFO     | event service: False
[2025-11-26 15:33:37] 2025-11-26 20:33:02,106 | INFO     | sizes: {0: 2284262, 1: 2284262, 11: 2284290, 19: 2284580, 22: 2284608, 28020: 2320819, 28027: 2329813, 28031: 2329869, 28067: 2330115}
[2025-11-26 15:33:37] 2025-11-26 20:33:02,106 | INFO     | --------------------------------------------------
[2025-11-26 15:33:37] 2025-11-26 20:33:02,106 | INFO     | 
[2025-11-26 15:33:37] 2025-11-26 20:33:02,106 | INFO     | executing command: ls -lF /tmp/boinchome/slots/6
[2025-11-26 15:33:37] 2025-11-26 20:33:02,251 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 15:33:37] 2025-11-26 20:33:02,251 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 15:33:37] 2025-11-26 20:33:02,251 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 15:33:37] 2025-11-26 20:33:02,251 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 15:33:37] 2025-11-26 20:33:02,252 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 15:33:37] 2025-11-26 20:33:02,252 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 15:33:37] 2025-11-26 20:33:02,252 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 15:33:37] 2025-11-26 20:33:02,252 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 15:33:37] 2025-11-26 20:33:02,252 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 15:33:37] 2025-11-26 20:33:02,252 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 15:33:37] 2025-11-26 20:33:02,252 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 15:33:37] 2025-11-26 20:33:02,252 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 15:33:37] 2025-11-26 20:33:02,252 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 15:33:37] 2025-11-26 20:33:02,252 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 15:33:37] 2025-11-26 20:33:02,252 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 15:33:37] 2025-11-26 20:33:02,252 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 15:33:37] 2025-11-26 20:33:02,252 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 15:33:37] 2025-11-26 20:33:02,252 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 15:33:37] 2025-11-26 20:33:02,252 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 15:33:37] 2025-11-26 20:33:02,252 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 15:33:37] 2025-11-26 20:33:02,252 | INFO     | job 6896451229 has completed (purged errors)
[2025-11-26 15:33:37] 2025-11-26 20:33:02,252 | INFO     | overall cleanup function is called
[2025-11-26 15:33:37] 2025-11-26 20:33:03,282 | INFO     | --- collectZombieJob: --- 10, [647465]
[2025-11-26 15:33:37] 2025-11-26 20:33:03,282 | INFO     | zombie collector waiting for pid 647465
[2025-11-26 15:33:37] 2025-11-26 20:33:03,282 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 15:33:37] 2025-11-26 20:33:03,282 | INFO     | collected zombie processes
[2025-11-26 15:33:37] 2025-11-26 20:33:03,282 | INFO     | will attempt to kill all subprocesses of pid=647465
[2025-11-26 15:33:37] 2025-11-26 20:33:04,880 | INFO     | process IDs to be killed: [647465] (in reverse order)
[2025-11-26 15:33:37] 2025-11-26 20:33:05,361 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 15:33:37] 2025-11-26 20:33:05,361 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 15:33:37] 2025-11-26 20:33:05,416 | INFO     | did not find any defunct processes belonging to 647465
[2025-11-26 15:33:37] 2025-11-26 20:33:05,490 | INFO     | did not find any defunct processes belonging to 647465
[2025-11-26 15:33:37] 2025-11-26 20:33:05,524 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 15:33:37] 2025-11-26 20:33:05,524 | INFO     | ready for new job
[2025-11-26 15:33:37] 2025-11-26 20:33:05,524 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 15:33:37] 2025-11-26 20:33:05,526 | INFO     | ***************************************
[2025-11-26 15:33:37] 2025-11-26 20:33:05,526 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 15:33:37] 2025-11-26 20:33:05,526 | INFO     | ***************************************
[2025-11-26 15:33:37] 2025-11-26 20:33:05,526 | INFO     | 
[2025-11-26 15:33:37] 2025-11-26 20:33:05,535 | INFO     | architecture information:
[2025-11-26 15:33:37] 2025-11-26 20:33:05,539 | INFO     | executing command: cat /etc/os-release
[2025-11-26 15:33:37] 2025-11-26 20:33:05,827 | INFO     | cat /etc/os-release:
[2025-11-26 15:33:37] NAME="CentOS Linux"
[2025-11-26 15:33:37] VERSION="7 (Core)"
[2025-11-26 15:33:37] ID="centos"
[2025-11-26 15:33:37] ID_LIKE="rhel fedora"
[2025-11-26 15:33:37] VERSION_ID="7"
[2025-11-26 15:33:37] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 15:33:37] ANSI_COLOR="0;31"
[2025-11-26 15:33:37] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 15:33:37] HOME_URL="https://www.centos.org/"
[2025-11-26 15:33:37] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 15:33:37] 
[2025-11-26 15:33:37] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 15:33:37] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 15:33:37] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 15:33:37] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 15:33:37] 
[2025-11-26 15:33:37] 2025-11-26 20:33:05,828 | INFO     | ***************************************
[2025-11-26 15:33:37] 2025-11-26 20:33:06,333 | INFO     | executing command: df -mP /tmp/boinchome/slots/6
[2025-11-26 15:33:37] 2025-11-26 20:33:06,408 | INFO     | sufficient remaining disk space (156626845696 B)
[2025-11-26 15:33:37] 2025-11-26 20:33:06,408 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 15:33:37] 2025-11-26 20:33:06,409 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 15:33:37] 2025-11-26 20:33:06,409 | INFO     | update_server=False
[2025-11-26 15:33:37] 2025-11-26 20:33:06,409 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 15:33:37] 2025-11-26 20:33:06,410 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 15:33:37] 2025-11-26 20:33:06,410 | INFO     | aborting loop
[2025-11-26 15:33:37] 2025-11-26 20:33:06,412 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 15:33:37] 2025-11-26 20:33:06,481 | INFO     | all job control threads have been joined
[2025-11-26 15:33:37] 2025-11-26 20:33:07,131 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 15:33:37] 2025-11-26 20:33:07,372 | INFO     | all data control threads have been joined
[2025-11-26 15:33:37] 2025-11-26 20:33:07,415 | INFO     | [job] retrieve thread has finished
[2025-11-26 15:33:37] 2025-11-26 20:33:07,416 | INFO     | [job] job monitor thread has finished
[2025-11-26 15:33:37] 2025-11-26 20:33:07,433 | INFO     | all payload control threads have been joined
[2025-11-26 15:33:37] 2025-11-26 20:33:07,437 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 15:33:37] 2025-11-26 20:33:07,488 | INFO     | [job] control thread has finished
[2025-11-26 15:33:37] 2025-11-26 20:33:07,644 | INFO     | [payload] validate_post thread has finished
[2025-11-26 15:33:37] 2025-11-26 20:33:07,759 | INFO     | [data] copytool_in thread has finished
[2025-11-26 15:33:37] 2025-11-26 20:33:07,771 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 15:33:37] 2025-11-26 20:33:07,771 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 15:33:37] 2025-11-26 20:33:07,777 | INFO     | [job] validate thread has finished
[2025-11-26 15:33:37] 2025-11-26 20:33:07,821 | INFO     | [payload] failed_post thread has finished
[2025-11-26 15:33:37] 2025-11-26 20:33:07,903 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 15:33:37] 2025-11-26 20:33:08,136 | INFO     | [job] queue monitor thread has finished
[2025-11-26 15:33:37] 2025-11-26 20:33:08,300 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 15:33:37] 2025-11-26 20:33:08,378 | INFO     | [data] control thread has finished
[2025-11-26 15:33:37] 2025-11-26 20:33:08,419 | INFO     | [data] copytool_out thread has finished
[2025-11-26 15:33:37] 2025-11-26 20:33:08,439 | INFO     | [payload] control thread has finished
[2025-11-26 15:33:37] 2025-11-26 20:33:11,915 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 15:33:37] 2025-11-26 20:33:26,167 | INFO     | [monitor] cgroup control has ended
[2025-11-26 15:33:37] 2025-11-26 20:33:27,228 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140663988913984)>', '<ExcThread(monitor, started 140663198840576)>']
[2025-11-26 15:33:37] 2025-11-26 20:33:32,256 | INFO     | all workflow threads have been joined
[2025-11-26 15:33:37] 2025-11-26 20:33:32,256 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 15:33:37] 2025-11-26 20:33:32,256 | INFO     | traces error code: 0
[2025-11-26 15:33:37] 2025-11-26 20:33:32,256 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 15:33:37] 2025-11-26 20:33:36,286 | INFO     | PID=584169 has CPU usage=4.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-26 15:33:37] 2025-11-26 20:33:36,286 | INFO     | .. there are 108 such processes running
[2025-11-26 15:33:37] 2025-11-26 20:33:36,287 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 15:33:37] 2025-11-26 20:33:36,287 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 15:33:37] 2025-11-26 20:33:36,287 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 15:33:37] 2025-11-26 20:33:36,287 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 15:33:37] 2025-11-26 20:33:36,287 | INFO     | [monitor] control thread has ended
[2025-11-26 15:33:37] 2025-11-26 20:33:36,635 [wrapper] ==== pilot stdout END ====
[2025-11-26 15:33:37] 2025-11-26 20:33:36,689 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 15:33:37] 2025-11-26 20:33:36,737 [wrapper] pilotpid: 584169
[2025-11-26 15:33:37] 2025-11-26 20:33:36,790 [wrapper] Pilot exit status: 0
[2025-11-26 15:33:37] 2025-11-26 20:33:36,909 [wrapper] pandaids: 6896451229
[2025-11-26 15:33:37] 2025-11-26 20:33:37,134 [wrapper] cleanup supervisor_pilot 2216241 584170
[2025-11-26 15:33:37] 2025-11-26 20:33:37,137 [wrapper] Test setup, not cleaning
[2025-11-26 15:33:37] 2025-11-26 20:33:37,144 [wrapper] apfmon messages muted
[2025-11-26 15:33:37] 2025-11-26 20:33:37,172 [wrapper] ==== wrapper stdout END ====
[2025-11-26 15:33:37] 2025-11-26 20:33:37,187 [wrapper] ==== wrapper stderr END ====
[2025-11-26 15:33:37]  *** Error codes and diagnostics ***
[2025-11-26 15:33:37]     "exeErrorCode": 0,
[2025-11-26 15:33:37]     "exeErrorDiag": "",
[2025-11-26 15:33:37]     "pilotErrorCode": 0,
[2025-11-26 15:33:37]     "pilotErrorDiag": "",
[2025-11-26 15:33:37]  *** Listing of results directory ***
[2025-11-26 15:33:37] total 1305532
[2025-11-26 15:33:37] -rw-r--r--. 1 boincer umatlas    576529 Nov 24 23:09 pilot3.tar.gz
[2025-11-26 15:33:37] -rw-r--r--. 1 boincer umatlas      5112 Nov 24 23:21 queuedata.json
[2025-11-26 15:33:37] -rwx------. 1 boincer umatlas     36292 Nov 24 23:24 runpilot2-wrapper.sh
[2025-11-26 15:33:37] -rw-r--r--. 1 boincer umatlas       100 Nov 26 07:43 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 15:33:37] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 07:43 run_atlas
[2025-11-26 15:33:37] -rw-r--r--. 1 boincer umatlas       105 Nov 26 07:43 job.xml
[2025-11-26 15:33:37] -rw-r--r--. 2 boincer umatlas 407448271 Nov 26 07:43 EVNT.47483658._002081.pool.root.1
[2025-11-26 15:33:37] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 07:43 start_atlas.sh
[2025-11-26 15:33:37] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 07:43 shared
[2025-11-26 15:33:37] -rw-r--r--. 2 boincer umatlas    590099 Nov 26 07:43 input.tar.gz
[2025-11-26 15:33:37] -rw-r--r--. 1 boincer umatlas         0 Nov 26 07:43 boinc_lockfile
[2025-11-26 15:33:37] -rw-r--r--. 1 boincer umatlas      2784 Nov 26 07:43 pandaJob.out
[2025-11-26 15:33:37] -rw-------. 1 boincer umatlas        57 Nov 26 07:43 setup.sh.local
[2025-11-26 15:33:37] -rw-------. 1 boincer umatlas    991830 Nov 26 07:44 agis_schedconf.cvmfs.json
[2025-11-26 15:33:37] drwx------. 5 boincer umatlas      4096 Nov 26 07:44 pilot3
[2025-11-26 15:33:37] -rw-r--r--. 1 boincer umatlas       532 Nov 26 15:22 boinc_task_state.xml
[2025-11-26 15:33:37] -rw-------. 1 boincer umatlas 915222510 Nov 26 15:31 HITS.47556161._000649.pool.root.1
[2025-11-26 15:33:37] -rw-r--r--. 1 boincer umatlas      7173 Nov 26 15:31 init_data.xml
[2025-11-26 15:33:37] -rw-------. 1 boincer umatlas      1088 Nov 26 15:32 memory_monitor_summary.json
[2025-11-26 15:33:37] -rw-------. 1 boincer umatlas   1516240 Nov 26 15:32 agis_ddmendpoints.agis.ALL.json
[2025-11-26 15:33:37] -rw-------. 1 boincer umatlas   1721451 Nov 26 15:32 log.47556161._000649.job.log.tgz.1
[2025-11-26 15:33:37] -rw-------. 1 boincer umatlas        95 Nov 26 15:32 pilot_heartbeat.json
[2025-11-26 15:33:37] -rw-------. 1 boincer umatlas      7950 Nov 26 15:33 heartbeat.json
[2025-11-26 15:33:37] -rw-------. 1 boincer umatlas       823 Nov 26 15:33 pilotlog.txt
[2025-11-26 15:33:37] -rw-------. 1 boincer umatlas   3419833 Nov 26 15:33 log.47556161._000649.job.log.1
[2025-11-26 15:33:37] -rw-r--r--. 1 boincer umatlas        29 Nov 26 15:33 wrapper_checkpoint.txt
[2025-11-26 15:33:37] -rw-------. 1 boincer umatlas       353 Nov 26 15:33 output.list
[2025-11-26 15:33:37] -rw-r--r--. 1 boincer umatlas       620 Nov 26 15:33 runtime_log
[2025-11-26 15:33:37] -rw-------. 1 boincer umatlas   5160960 Nov 26 15:33 result.tar.gz
[2025-11-26 15:33:37] -rw-r--r--. 1 boincer umatlas      9333 Nov 26 15:33 runtime_log.err
[2025-11-26 15:33:37] -rw-------. 1 boincer umatlas       663 Nov 26 15:33 CjQKDmWmzh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmE7LKDmenzenm.diag
[2025-11-26 15:33:37] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 15:33 boinc_mmap_file
[2025-11-26 15:33:37] -rw-r--r--. 1 boincer umatlas     21348 Nov 26 15:33 stderr.txt
[2025-11-26 15:33:38] HITS file was successfully produced:
[2025-11-26 15:33:38] -rw-------. 1 boincer umatlas 915222510 Nov 26 15:31 shared/HITS.pool.root.1
[2025-11-26 15:33:38]  *** Contents of shared directory: ***
[2025-11-26 15:33:38] total 1297316
[2025-11-26 15:33:38] -rw-r--r--. 2 boincer umatlas 407448271 Nov 26 07:43 ATLAS.root_0
[2025-11-26 15:33:38] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 07:43 start_atlas.sh
[2025-11-26 15:33:38] -rw-r--r--. 2 boincer umatlas    590099 Nov 26 07:43 input.tar.gz
[2025-11-26 15:33:38] -rw-------. 1 boincer umatlas 915222510 Nov 26 15:31 HITS.pool.root.1
[2025-11-26 15:33:38] -rw-------. 1 boincer umatlas   5160960 Nov 26 15:33 result.tar.gz
15:33:39 (563086): run_atlas exited; CPU time 136345.114714
15:33:39 (563086): called boinc_finish(0)

</stderr_txt>
]]>

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