Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
08:13:37 (1614413): wrapper (7.7.26015): starting
08:13:37 (1614413): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 08:13:37] Arguments: --nthreads 8
[2025-11-26 08:13:37] Threads: 8
[2025-11-26 08:13:37] Checking for CVMFS
[2025-11-26 08:13:37] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 08:13:37] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 08:13:37] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 08:13:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 08:13:38] 2.13.3.0 12525 29960 247932 153322 1 747 29359028 40960001 46473 16776704 0 233526422 99.716 181967719 35563 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 08:13:38] CVMFS is ok
[2025-11-26 08:13:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 08:13:38] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 08:13:38] Further information can be found at the LHC@home message board.
[2025-11-26 08:13:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 08:13:38] Checking for apptainer binary...
[2025-11-26 08:13:38] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 08:13:38] Running /usr/bin/apptainer --version
[2025-11-26 08:13:38] apptainer version 1.4.4-1.el9
[2025-11-26 08:13:38] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 08:13:38] c7-4-30.aglt2.org
[2025-11-26 08:13:38] apptainer works
[2025-11-26 08:13:38] Set ATHENA_PROC_NUMBER=8
[2025-11-26 08:13:38] Set ATHENA_CORE_NUMBER=8
[2025-11-26 08:13:38] Starting ATLAS job with PandaID=6891594293
[2025-11-26 08:13:38] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 02:30:54]  *** The last 200 lines of the pilot log: ***
[2025-11-27 02:30:54] 2025-11-27 07:29:47,330 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 02:30:55] 2025-11-27 07:29:47,902 | INFO     | time since job start (65755s) is within the limit (172800.0s)
[2025-11-27 02:30:55] 2025-11-27 07:29:49,835 | INFO     | monitor loop #3957: job 0:6891594293 is in state 'finished'
[2025-11-27 02:30:55] 2025-11-27 07:29:49,835 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 02:30:55] 2025-11-27 07:29:49,917 | INFO     | time since job start (65757s) is within the limit (172800.0s)
[2025-11-27 02:30:55] 2025-11-27 07:29:51,924 | INFO     | time since job start (65759s) is within the limit (172800.0s)
[2025-11-27 02:30:55] 2025-11-27 07:29:52,351 | INFO     | monitor loop #3958: job 0:6891594293 is in state 'finished'
[2025-11-27 02:30:55] 2025-11-27 07:29:52,352 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 02:30:55] 2025-11-27 07:29:53,931 | INFO     | time since job start (65761s) is within the limit (172800.0s)
[2025-11-27 02:30:55] 2025-11-27 07:29:54,856 | INFO     | monitor loop #3959: job 0:6891594293 is in state 'finished'
[2025-11-27 02:30:55] 2025-11-27 07:29:54,856 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 02:30:55] 2025-11-27 07:29:55,960 | INFO     | time since job start (65763s) is within the limit (172800.0s)
[2025-11-27 02:30:55] 2025-11-27 07:29:57,361 | INFO     | monitor loop #3960: job 0:6891594293 is in state 'finished'
[2025-11-27 02:30:55] 2025-11-27 07:29:57,362 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 02:30:55] 2025-11-27 07:29:58,169 | INFO     | PID=1618111 has CPU usage=8.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 02:30:55] 2025-11-27 07:29:58,169 | INFO     | .. there are 66 such processes running
[2025-11-27 02:30:55] 2025-11-27 07:29:59,170 | INFO     | time since job start (65767s) is within the limit (172800.0s)
[2025-11-27 02:30:55] 2025-11-27 07:29:59,347 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 02:30:55] 2025-11-27 07:29:59,353 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3143.4319583333345
[2025-11-27 02:30:55] 2025-11-27 07:29:59,368 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6891594293/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 02:30:55] 2025-11-27 07:29:59,368 | INFO     | extracted standard info from prmon json
[2025-11-27 02:30:55] 2025-11-27 07:29:59,368 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 02:30:55] 2025-11-27 07:29:59,368 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 02:30:55] 2025-11-27 07:29:59,383 | INFO     | fitting pss+swap vs Time
[2025-11-27 02:30:55] 2025-11-27 07:29:59,384 | INFO     | sum of square deviations: 387364846395.7678
[2025-11-27 02:30:55] 2025-11-27 07:29:59,407 | INFO     | sum of deviations: 13068005420763.504
[2025-11-27 02:30:55] 2025-11-27 07:29:59,407 | INFO     | mean x: 1764195682.054782
[2025-11-27 02:30:55] 2025-11-27 07:29:59,407 | INFO     | mean y: 3335178.008356546
[2025-11-27 02:30:55] 2025-11-27 07:29:59,407 | INFO     | intersect: -59512955344.71199
[2025-11-27 02:30:55] 2025-11-27 07:29:59,409 | INFO     | chi2: 27.802770841386785
[2025-11-27 02:30:55] 2025-11-27 07:29:59,409 | INFO     | sum of square deviations: 381995082880.1785
[2025-11-27 02:30:55] 2025-11-27 07:29:59,433 | INFO     | sum of deviations: 13519836691453.662
[2025-11-27 02:30:55] 2025-11-27 07:29:59,434 | INFO     | mean x: 1764195529.5597014
[2025-11-27 02:30:55] 2025-11-27 07:29:59,434 | INFO     | mean y: 3348012.4505597013
[2025-11-27 02:30:55] 2025-11-27 07:29:59,434 | INFO     | intersect: -62436291973.49498
[2025-11-27 02:30:55] 2025-11-27 07:29:59,435 | INFO     | chi2: 24.24098129428778
[2025-11-27 02:30:55] 2025-11-27 07:29:59,435 | INFO     | current chi2=24.24098129428778 (change=12.810915744401191 %)
[2025-11-27 02:30:55] 2025-11-27 07:29:59,435 | INFO     | right removable region: 1071
[2025-11-27 02:30:55] 2025-11-27 07:29:59,436 | INFO     | sum of square deviations: 381994389920.17883
[2025-11-27 02:30:55] 2025-11-27 07:29:59,463 | INFO     | sum of deviations: 12684086944433.244
[2025-11-27 02:30:55] 2025-11-27 07:29:59,464 | INFO     | mean x: 1764195834.5597014
[2025-11-27 02:30:55] 2025-11-27 07:29:59,464 | INFO     | mean y: 3346070.2462686566
[2025-11-27 02:30:55] 2025-11-27 07:29:59,464 | INFO     | intersect: -58576606785.18216
[2025-11-27 02:30:55] 2025-11-27 07:29:59,465 | INFO     | chi2: 25.32508741770453
[2025-11-27 02:30:55] 2025-11-27 07:29:59,465 | INFO     | current chi2=25.32508741770453 (change=8.911642072717488 %)
[2025-11-27 02:30:55] 2025-11-27 07:29:59,465 | INFO     | left removable region: 10
[2025-11-27 02:30:55] 2025-11-27 07:29:59,466 | INFO     | sum of square deviations: 370355401905.69867
[2025-11-27 02:30:55] 2025-11-27 07:29:59,501 | INFO     | sum of deviations: 13074832430999.291
[2025-11-27 02:30:55] 2025-11-27 07:29:59,501 | INFO     | mean x: 1764195804.070688
[2025-11-27 02:30:55] 2025-11-27 07:29:59,501 | INFO     | mean y: 3366613.542884072
[2025-11-27 02:30:55] 2025-11-27 07:29:59,502 | INFO     | intersect: -62278874701.16487
[2025-11-27 02:30:55] 2025-11-27 07:29:59,503 | INFO     | chi2: 20.911615992894557
[2025-11-27 02:30:55] 2025-11-27 07:29:59,503 | INFO     | current memory leak: 35.30 B/s (using 1061 data points, chi2=20.91)
[2025-11-27 02:30:55] 2025-11-27 07:29:59,504 | INFO     | could have reported an average CPU frequency of 3081 MHz (40 samples)
[2025-11-27 02:30:55] 2025-11-27 07:29:59,504 | INFO     | ..............................
[2025-11-27 02:30:55] 2025-11-27 07:29:59,504 | INFO     | . Timing measurements:
[2025-11-27 02:30:55] 2025-11-27 07:29:59,504 | INFO     | . get job = 0 s
[2025-11-27 02:30:55] 2025-11-27 07:29:59,504 | INFO     | . initial setup = 2 s
[2025-11-27 02:30:55] 2025-11-27 07:29:59,505 | INFO     | . payload setup = 8 s
[2025-11-27 02:30:55] 2025-11-27 07:29:59,505 | INFO     | . stage-in = 0 s
[2025-11-27 02:30:55] 2025-11-27 07:29:59,505 | INFO     | . payload execution = 65697 s
[2025-11-27 02:30:55] 2025-11-27 07:29:59,505 | INFO     | . stage-out = 23 s
[2025-11-27 02:30:55] 2025-11-27 07:29:59,505 | INFO     | . log creation = 4 s
[2025-11-27 02:30:55] 2025-11-27 07:29:59,505 | INFO     | ..............................
[2025-11-27 02:30:55] 2025-11-27 07:29:59,590 | INFO     | 
[2025-11-27 02:30:55] 2025-11-27 07:29:59,591 | INFO     | job summary report
[2025-11-27 02:30:55] 2025-11-27 07:29:59,591 | INFO     | --------------------------------------------------
[2025-11-27 02:30:55] 2025-11-27 07:29:59,591 | INFO     | PanDA job id: 6891594293
[2025-11-27 02:30:55] 2025-11-27 07:29:59,591 | INFO     | task id: 47493068
[2025-11-27 02:30:55] 2025-11-27 07:29:59,591 | INFO     | errors: (none)
[2025-11-27 02:30:55] 2025-11-27 07:29:59,591 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 02:30:55] 2025-11-27 07:29:59,591 | INFO     | pilot state: finished 
[2025-11-27 02:30:55] 2025-11-27 07:29:59,591 | INFO     | transexitcode: 0
[2025-11-27 02:30:55] 2025-11-27 07:29:59,592 | INFO     | exeerrorcode: 0
[2025-11-27 02:30:55] 2025-11-27 07:29:59,592 | INFO     | exeerrordiag: 
[2025-11-27 02:30:55] 2025-11-27 07:29:59,592 | INFO     | exitcode: 0
[2025-11-27 02:30:55] 2025-11-27 07:29:59,592 | INFO     | exitmsg: OK
[2025-11-27 02:30:55] 2025-11-27 07:29:59,592 | INFO     | cpuconsumptiontime: 210361 s
[2025-11-27 02:30:55] 2025-11-27 07:29:59,592 | INFO     | nevents: 1000
[2025-11-27 02:30:55] 2025-11-27 07:29:59,592 | INFO     | neventsw: 0
[2025-11-27 02:30:55] 2025-11-27 07:29:59,592 | INFO     | pid: 1624701
[2025-11-27 02:30:55] 2025-11-27 07:29:59,592 | INFO     | pgrp: 1624701
[2025-11-27 02:30:55] 2025-11-27 07:29:59,592 | INFO     | corecount: 8
[2025-11-27 02:30:55] 2025-11-27 07:29:59,592 | INFO     | event service: False
[2025-11-27 02:30:55] 2025-11-27 07:29:59,592 | INFO     | sizes: {0: 2283476, 1: 2284332, 6: 2284594, 12: 2284622, 65706: 2340270, 65731: 2349510, 65734: 2349694, 65751: 2349718}
[2025-11-27 02:30:55] 2025-11-27 07:29:59,592 | INFO     | --------------------------------------------------
[2025-11-27 02:30:55] 2025-11-27 07:29:59,592 | INFO     | 
[2025-11-27 02:30:55] 2025-11-27 07:29:59,593 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-11-27 02:30:55] 2025-11-27 07:29:59,651 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 02:30:55] 2025-11-27 07:29:59,652 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 02:30:55] 2025-11-27 07:29:59,652 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 02:30:55] 2025-11-27 07:29:59,652 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 02:30:55] 2025-11-27 07:29:59,652 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 02:30:55] 2025-11-27 07:29:59,652 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 02:30:55] 2025-11-27 07:29:59,652 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 02:30:55] 2025-11-27 07:29:59,652 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 02:30:55] 2025-11-27 07:29:59,652 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 02:30:55] 2025-11-27 07:29:59,652 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 02:30:55] 2025-11-27 07:29:59,652 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 02:30:55] 2025-11-27 07:29:59,652 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 02:30:55] 2025-11-27 07:29:59,652 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 02:30:55] 2025-11-27 07:29:59,653 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 02:30:55] 2025-11-27 07:29:59,653 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 02:30:55] 2025-11-27 07:29:59,653 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 02:30:55] 2025-11-27 07:29:59,653 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 02:30:55] 2025-11-27 07:29:59,653 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 02:30:55] 2025-11-27 07:29:59,653 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 02:30:55] 2025-11-27 07:29:59,653 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 02:30:55] 2025-11-27 07:29:59,653 | INFO     | job 6891594293 has completed (purged errors)
[2025-11-27 02:30:55] 2025-11-27 07:29:59,653 | INFO     | overall cleanup function is called
[2025-11-27 02:30:55] 2025-11-27 07:30:00,672 | INFO     | --- collectZombieJob: --- 10, [1624701]
[2025-11-27 02:30:55] 2025-11-27 07:30:00,672 | INFO     | zombie collector waiting for pid 1624701
[2025-11-27 02:30:55] 2025-11-27 07:30:00,673 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 02:30:55] 2025-11-27 07:30:00,673 | INFO     | collected zombie processes
[2025-11-27 02:30:55] 2025-11-27 07:30:00,673 | INFO     | will attempt to kill all subprocesses of pid=1624701
[2025-11-27 02:30:55] 2025-11-27 07:30:01,780 | INFO     | process IDs to be killed: [1624701] (in reverse order)
[2025-11-27 02:30:55] 2025-11-27 07:30:02,035 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 02:30:55] 2025-11-27 07:30:02,035 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 02:30:55] 2025-11-27 07:30:02,138 | INFO     | did not find any defunct processes belonging to 1624701
[2025-11-27 02:30:55] 2025-11-27 07:30:02,418 | INFO     | did not find any defunct processes belonging to 1624701
[2025-11-27 02:30:55] 2025-11-27 07:30:02,420 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 02:30:55] 2025-11-27 07:30:02,420 | INFO     | ready for new job
[2025-11-27 02:30:55] 2025-11-27 07:30:02,420 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 02:30:55] 2025-11-27 07:30:02,426 | INFO     | ***************************************
[2025-11-27 02:30:55] 2025-11-27 07:30:02,427 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 02:30:55] 2025-11-27 07:30:02,427 | INFO     | ***************************************
[2025-11-27 02:30:55] 2025-11-27 07:30:02,427 | INFO     | 
[2025-11-27 02:30:55] 2025-11-27 07:30:02,434 | INFO     | architecture information:
[2025-11-27 02:30:55] 2025-11-27 07:30:02,438 | INFO     | executing command: cat /etc/os-release
[2025-11-27 02:30:55] 2025-11-27 07:30:02,491 | INFO     | cat /etc/os-release:
[2025-11-27 02:30:55] NAME="CentOS Linux"
[2025-11-27 02:30:55] VERSION="7 (Core)"
[2025-11-27 02:30:55] ID="centos"
[2025-11-27 02:30:55] ID_LIKE="rhel fedora"
[2025-11-27 02:30:55] VERSION_ID="7"
[2025-11-27 02:30:55] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 02:30:55] ANSI_COLOR="0;31"
[2025-11-27 02:30:55] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 02:30:55] HOME_URL="https://www.centos.org/"
[2025-11-27 02:30:55] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 02:30:55] 
[2025-11-27 02:30:55] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 02:30:55] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 02:30:55] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 02:30:55] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 02:30:55] 
[2025-11-27 02:30:55] 2025-11-27 07:30:02,492 | INFO     | ***************************************
[2025-11-27 02:30:55] 2025-11-27 07:30:02,995 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-11-27 02:30:55] 2025-11-27 07:30:03,168 | INFO     | sufficient remaining disk space (120468799488 B)
[2025-11-27 02:30:55] 2025-11-27 07:30:03,172 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 02:30:55] 2025-11-27 07:30:03,172 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 02:30:55] 2025-11-27 07:30:03,173 | INFO     | update_server=False
[2025-11-27 02:30:55] 2025-11-27 07:30:03,173 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 02:30:55] 2025-11-27 07:30:03,180 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 02:30:55] 2025-11-27 07:30:03,324 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 02:30:55] 2025-11-27 07:30:03,391 | INFO     | all job control threads have been joined
[2025-11-27 02:30:55] 2025-11-27 07:30:03,402 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 02:30:55] 2025-11-27 07:30:03,403 | INFO     | aborting loop
[2025-11-27 02:30:55] 2025-11-27 07:30:03,878 | INFO     | all payload control threads have been joined
[2025-11-27 02:30:55] 2025-11-27 07:30:04,178 | INFO     | [job] retrieve thread has finished
[2025-11-27 02:30:55] 2025-11-27 07:30:04,264 | INFO     | all data control threads have been joined
[2025-11-27 02:30:55] 2025-11-27 07:30:04,399 | INFO     | [job] control thread has finished
[2025-11-27 02:30:55] 2025-11-27 07:30:04,408 | INFO     | [job] job monitor thread has finished
[2025-11-27 02:30:55] 2025-11-27 07:30:04,449 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 02:30:55] 2025-11-27 07:30:04,475 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 02:30:55] 2025-11-27 07:30:04,626 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 02:30:55] 2025-11-27 07:30:04,630 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 02:30:55] 2025-11-27 07:30:04,660 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 02:30:55] 2025-11-27 07:30:04,913 | INFO     | [payload] control thread has finished
[2025-11-27 02:30:55] 2025-11-27 07:30:05,270 | INFO     | [data] control thread has finished
[2025-11-27 02:30:55] 2025-11-27 07:30:05,344 | INFO     | [data] copytool_out thread has finished
[2025-11-27 02:30:55] 2025-11-27 07:30:05,352 | INFO     | [payload] failed_post thread has finished
[2025-11-27 02:30:55] 2025-11-27 07:30:05,375 | INFO     | [payload] validate_post thread has finished
[2025-11-27 02:30:55] 2025-11-27 07:30:05,387 | INFO     | [job] validate thread has finished
[2025-11-27 02:30:55] 2025-11-27 07:30:05,593 | INFO     | [data] copytool_in thread has finished
[2025-11-27 02:30:55] 2025-11-27 07:30:05,641 | INFO     | [job] queue monitor thread has finished
[2025-11-27 02:30:55] 2025-11-27 07:30:07,192 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 02:30:55] 2025-11-27 07:30:33,353 | INFO     | PID=1618111 has CPU usage=5.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 02:30:55] 2025-11-27 07:30:33,354 | INFO     | .. there are 65 such processes running
[2025-11-27 02:30:55] 2025-11-27 07:30:33,354 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 02:30:55] 2025-11-27 07:30:33,354 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 02:30:55] 2025-11-27 07:30:33,354 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 02:30:55] 2025-11-27 07:30:48,572 | INFO     | [monitor] cgroup control has ended
[2025-11-27 02:30:55] 2025-11-27 07:30:48,975 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139776369416000)>', '<ExcThread(monitor, started 139775734437632)>']
[2025-11-27 02:30:55] 2025-11-27 07:30:49,464 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 02:30:55] 2025-11-27 07:30:49,464 | INFO     | [monitor] control thread has ended
[2025-11-27 02:30:55] 2025-11-27 07:30:54,002 | INFO     | all workflow threads have been joined
[2025-11-27 02:30:55] 2025-11-27 07:30:54,002 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 02:30:55] 2025-11-27 07:30:54,003 | INFO     | traces error code: 0
[2025-11-27 02:30:55] 2025-11-27 07:30:54,003 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 02:30:55] 2025-11-27 07:30:54,224 [wrapper] ==== pilot stdout END ====
[2025-11-27 02:30:55] 2025-11-27 07:30:54,236 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 02:30:55] 2025-11-27 07:30:54,246 [wrapper] pilotpid: 1618111
[2025-11-27 02:30:55] 2025-11-27 07:30:54,251 [wrapper] Pilot exit status: 0
[2025-11-27 02:30:55] 2025-11-27 07:30:54,282 [wrapper] pandaids: 6891594293
[2025-11-27 02:30:55] 2025-11-27 07:30:54,438 [wrapper] cleanup supervisor_pilot  216911 1618112
[2025-11-27 02:30:55] 2025-11-27 07:30:54,443 [wrapper] Test setup, not cleaning
[2025-11-27 02:30:55] 2025-11-27 07:30:54,449 [wrapper] apfmon messages muted
[2025-11-27 02:30:55] 2025-11-27 07:30:54,452 [wrapper] ==== wrapper stdout END ====
[2025-11-27 02:30:55] 2025-11-27 07:30:54,462 [wrapper] ==== wrapper stderr END ====
[2025-11-27 02:30:55]  *** Error codes and diagnostics ***
[2025-11-27 02:30:55]     "exeErrorCode": 0,
[2025-11-27 02:30:55]     "exeErrorDiag": "",
[2025-11-27 02:30:55]     "pilotErrorCode": 0,
[2025-11-27 02:30:55]     "pilotErrorDiag": "",
[2025-11-27 02:30:55]  *** Listing of results directory ***
[2025-11-27 02:30:55] total 1325404
[2025-11-27 02:30:55] -rw-r--r--. 1 boincer umatlas    576529 Nov 18 13:36 pilot3.tar.gz
[2025-11-27 02:30:55] -rw-r--r--. 1 boincer umatlas      5112 Nov 18 13:40 queuedata.json
[2025-11-27 02:30:55] -rwx------. 1 boincer umatlas     36292 Nov 18 13:40 runpilot2-wrapper.sh
[2025-11-27 02:30:55] -rw-r--r--. 1 boincer umatlas       100 Nov 26 08:13 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 02:30:55] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 08:13 run_atlas
[2025-11-27 02:30:55] -rw-r--r--. 1 boincer umatlas       105 Nov 26 08:13 job.xml
[2025-11-27 02:30:55] -rw-r--r--. 2 boincer umatlas 408888502 Nov 26 08:13 EVNT.47493065._000759.pool.root.1
[2025-11-27 02:30:55] -rw-r--r--. 2 boincer umatlas     15120 Nov 26 08:13 start_atlas.sh
[2025-11-27 02:30:55] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 08:13 shared
[2025-11-27 02:30:55] -rw-r--r--. 2 boincer umatlas    590099 Nov 26 08:13 input.tar.gz
[2025-11-27 02:30:55] -rw-r--r--. 1 boincer umatlas         0 Nov 26 08:13 boinc_lockfile
[2025-11-27 02:30:55] -rw-r--r--. 1 boincer umatlas      2773 Nov 26 08:13 pandaJob.out
[2025-11-27 02:30:55] -rw-------. 1 boincer umatlas    991830 Nov 26 08:13 agis_schedconf.cvmfs.json
[2025-11-27 02:30:55] drwx------. 5 boincer umatlas      4096 Nov 26 08:13 pilot3
[2025-11-27 02:30:55] -rw-r--r--. 1 boincer umatlas       533 Nov 27 02:16 boinc_task_state.xml
[2025-11-27 02:30:55] -rw-------. 1 boincer umatlas 923355055 Nov 27 02:28 HITS.47493068._006237.pool.root.1
[2025-11-27 02:30:55] -rw-------. 1 boincer umatlas      1075 Nov 27 02:29 memory_monitor_summary.json
[2025-11-27 02:30:55] -rw-------. 1 boincer umatlas   1516240 Nov 27 02:29 agis_ddmendpoints.agis.ALL.json
[2025-11-27 02:30:55] -rw-------. 1 boincer umatlas   2198376 Nov 27 02:29 log.47493068._006237.job.log.tgz.1
[2025-11-27 02:30:55] -rw-------. 1 boincer umatlas        95 Nov 27 02:29 pilot_heartbeat.json
[2025-11-27 02:30:55] -rw-r--r--. 1 boincer umatlas      6949 Nov 27 02:29 init_data.xml
[2025-11-27 02:30:55] -rw-------. 1 boincer umatlas      8636 Nov 27 02:29 heartbeat.json
[2025-11-27 02:30:55] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 02:30 boinc_mmap_file
[2025-11-27 02:30:55] -rw-r--r--. 1 boincer umatlas        29 Nov 27 02:30 wrapper_checkpoint.txt
[2025-11-27 02:30:55] -rw-------. 1 boincer umatlas      4825 Nov 27 02:30 pilotlog.txt
[2025-11-27 02:30:55] -rw-------. 1 boincer umatlas   8326177 Nov 27 02:30 log.47493068._006237.job.log.1
[2025-11-27 02:30:55] -rw-------. 1 boincer umatlas       353 Nov 27 02:30 output.list
[2025-11-27 02:30:55] -rw-r--r--. 1 boincer umatlas       620 Nov 27 02:30 runtime_log
[2025-11-27 02:30:55] -rw-------. 1 boincer umatlas  10547200 Nov 27 02:30 result.tar.gz
[2025-11-27 02:30:55] -rw-r--r--. 1 boincer umatlas      8699 Nov 27 02:30 runtime_log.err
[2025-11-27 02:30:55] -rw-------. 1 boincer umatlas       664 Nov 27 02:30 5hvNDmPoff8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmwhFKDmSsIOun.diag
[2025-11-27 02:30:55] -rw-r--r--. 1 boincer umatlas     21858 Nov 27 02:30 stderr.txt
[2025-11-27 02:30:55] HITS file was successfully produced:
[2025-11-27 02:30:55] -rw-------. 1 boincer umatlas 923355055 Nov 27 02:28 shared/HITS.pool.root.1
[2025-11-27 02:30:55]  *** Contents of shared directory: ***
[2025-11-27 02:30:55] total 1311928
[2025-11-27 02:30:55] -rw-r--r--. 2 boincer umatlas 408888502 Nov 26 08:13 ATLAS.root_0
[2025-11-27 02:30:55] -rw-r--r--. 2 boincer umatlas     15120 Nov 26 08:13 start_atlas.sh
[2025-11-27 02:30:55] -rw-r--r--. 2 boincer umatlas    590099 Nov 26 08:13 input.tar.gz
[2025-11-27 02:30:55] -rw-------. 1 boincer umatlas 923355055 Nov 27 02:28 HITS.pool.root.1
[2025-11-27 02:30:55] -rw-------. 1 boincer umatlas  10547200 Nov 27 02:30 result.tar.gz
02:30:56 (1614413): run_atlas exited; CPU time 212084.058669
02:30:56 (1614413): called boinc_finish(0)

</stderr_txt>
]]>

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