Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
08:17:39 (19199): wrapper (7.7.26015): starting
08:17:39 (19199): wrapper: running run_atlas (--nthreads 12)
[2025-11-26 08:17:39] Arguments: --nthreads 12
[2025-11-26 08:17:39] Threads: 12
[2025-11-26 08:17:39] Checking for CVMFS
[2025-11-26 08:17:40] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 08:17:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 08:17:40] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 08:17:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 08:17:40] 2.11.2.0 2910 38951 95384 153323 2 9 14561442 20275201 1 130560 0 6110679 99.855 1746985 27606 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-26 08:17:40] CVMFS is ok
[2025-11-26 08:17:40] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 08:17:40] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 08:17:40] Further information can be found at the LHC@home message board.
[2025-11-26 08:17:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 08:17:40] Checking for apptainer binary...
[2025-11-26 08:17:40] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 08:17:40] Running /usr/bin/apptainer --version
[2025-11-26 08:17:40] apptainer version 1.3.2-1.el7
[2025-11-26 08:17:40] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 08:17:41] c-205-11.aglt2.org
[2025-11-26 08:17:41] apptainer works
[2025-11-26 08:17:41] Set ATHENA_PROC_NUMBER=12
[2025-11-26 08:17:41] Set ATHENA_CORE_NUMBER=12
[2025-11-26 08:17:41] Starting ATLAS job with PandaID=6894238316
[2025-11-26 08:17:41] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 11:51:22]  *** The last 200 lines of the pilot log: ***
[2025-11-26 11:51:22] 2025-11-26 16:50:47,423 | INFO     | time since job start (12771s) is within the limit (172800.0s)
[2025-11-26 11:51:22] 2025-11-26 16:50:48,349 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-26 11:51:22] 2025-11-26 16:50:48,353 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1729.0833333333333
[2025-11-26 11:51:22] 2025-11-26 16:50:48,356 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6894238316/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 11:51:22] 2025-11-26 16:50:48,357 | INFO     | extracted standard info from prmon json
[2025-11-26 11:51:22] 2025-11-26 16:50:48,357 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 11:51:22] 2025-11-26 16:50:48,357 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 11:51:22] 2025-11-26 16:50:48,357 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-26 11:51:22] 2025-11-26 16:50:48,357 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-26 11:51:22] 2025-11-26 16:50:48,361 | INFO     | fitting pss+swap vs Time
[2025-11-26 11:51:22] 2025-11-26 16:50:48,361 | INFO     | sum of square deviations: 2830787960.0
[2025-11-26 11:51:22] 2025-11-26 16:50:48,362 | INFO     | sum of deviations: -9204317267.000006
[2025-11-26 11:51:22] 2025-11-26 16:50:48,363 | INFO     | mean x: 1764169449.0
[2025-11-26 11:51:22] 2025-11-26 16:50:48,363 | INFO     | mean y: 2793076.3588516745
[2025-11-26 11:51:22] 2025-11-26 16:50:48,363 | INFO     | intersect: 5738996405.888552
[2025-11-26 11:51:22] 2025-11-26 16:50:48,363 | INFO     | chi2: 1.728283339785257
[2025-11-26 11:51:22] 2025-11-26 16:50:48,363 | INFO     | sum of square deviations: 2632440055.0
[2025-11-26 11:51:22] 2025-11-26 16:50:48,365 | INFO     | sum of deviations: -8769805666.0
[2025-11-26 11:51:22] 2025-11-26 16:50:48,365 | INFO     | mean x: 1764169296.5
[2025-11-26 11:51:22] 2025-11-26 16:50:48,365 | INFO     | mean y: 2793410.5
[2025-11-26 11:51:22] 2025-11-26 16:50:48,365 | INFO     | intersect: 5880010581.254885
[2025-11-26 11:51:22] 2025-11-26 16:50:48,365 | INFO     | chi2: 1.7278847687227394
[2025-11-26 11:51:22] 2025-11-26 16:50:48,365 | INFO     | current chi2=1.7278847687227394 (change=0.02306167358918936 %)
[2025-11-26 11:51:22] 2025-11-26 16:50:48,365 | INFO     | right removable region: 203
[2025-11-26 11:51:22] 2025-11-26 16:50:48,366 | INFO     | sum of square deviations: 2632440055.0
[2025-11-26 11:51:22] 2025-11-26 16:50:48,367 | INFO     | sum of deviations: -45633909222.50002
[2025-11-26 11:51:22] 2025-11-26 16:50:48,367 | INFO     | mean x: 1764169601.5
[2025-11-26 11:51:22] 2025-11-26 16:50:48,367 | INFO     | mean y: 2820816.9166666665
[2025-11-26 11:51:22] 2025-11-26 16:50:48,367 | INFO     | intersect: 30585076733.830616
[2025-11-26 11:51:22] 2025-11-26 16:50:48,368 | INFO     | chi2: 0.2665521662799774
[2025-11-26 11:51:22] 2025-11-26 16:50:48,368 | INFO     | current chi2=0.2665521662799774 (change=84.57705631108513 %)
[2025-11-26 11:51:22] 2025-11-26 16:50:48,368 | INFO     | sum of square deviations: 2443580700.0
[2025-11-26 11:51:22] 2025-11-26 16:50:48,369 | INFO     | sum of deviations: -51798953492.0
[2025-11-26 11:51:22] 2025-11-26 16:50:48,369 | INFO     | mean x: 1764169754.0
[2025-11-26 11:51:22] 2025-11-26 16:50:48,369 | INFO     | mean y: 2825726.904522613
[2025-11-26 11:51:22] 2025-11-26 16:50:48,369 | INFO     | intersect: 37399645500.21468
[2025-11-26 11:51:22] 2025-11-26 16:50:48,370 | INFO     | chi2: 0.1774873549866025
[2025-11-26 11:51:22] 2025-11-26 16:50:48,370 | INFO     | current chi2=0.1774873549866025 (change=33.41365126998227 %)
[2025-11-26 11:51:22] 2025-11-26 16:50:48,370 | INFO     | sum of square deviations: 2263977332.5
[2025-11-26 11:51:22] 2025-11-26 16:50:48,371 | INFO     | sum of deviations: -47770977793.5
[2025-11-26 11:51:22] 2025-11-26 16:50:48,371 | INFO     | mean x: 1764169906.5
[2025-11-26 11:51:22] 2025-11-26 16:50:48,371 | INFO     | mean y: 2822297.7989690723
[2025-11-26 11:51:22] 2025-11-26 16:50:48,371 | INFO     | intersect: 37227630257.47516
[2025-11-26 11:51:22] 2025-11-26 16:50:48,372 | INFO     | chi2: 0.17708829123045158
[2025-11-26 11:51:22] 2025-11-26 16:50:48,372 | INFO     | current chi2=0.17708829123045158 (change=0.2248406688921854 %)
[2025-11-26 11:51:22] 2025-11-26 16:50:48,372 | INFO     | left removable region: 30
[2025-11-26 11:51:22] 2025-11-26 16:50:48,372 | INFO     | sum of square deviations: 1605470102.0
[2025-11-26 11:51:22] 2025-11-26 16:50:48,373 | INFO     | sum of deviations: -29272625161.0
[2025-11-26 11:51:22] 2025-11-26 16:50:48,373 | INFO     | mean x: 1764170181.0
[2025-11-26 11:51:22] 2025-11-26 16:50:48,373 | INFO     | mean y: 2806494.543352601
[2025-11-26 11:51:22] 2025-11-26 16:50:48,373 | INFO     | intersect: 32169018972.928406
[2025-11-26 11:51:22] 2025-11-26 16:50:48,374 | INFO     | chi2: 0.15630668401095554
[2025-11-26 11:51:22] 2025-11-26 16:50:48,374 | INFO     | current memory leak: -18.23 B/s (using 173 data points, chi2=0.16)
[2025-11-26 11:51:22] 2025-11-26 16:50:48,374 | INFO     | could have reported an average CPU frequency of 2294 MHz (10 samples)
[2025-11-26 11:51:22] 2025-11-26 16:50:48,374 | INFO     | ..............................
[2025-11-26 11:51:22] 2025-11-26 16:50:48,374 | INFO     | . Timing measurements:
[2025-11-26 11:51:22] 2025-11-26 16:50:48,375 | INFO     | . get job = 0 s
[2025-11-26 11:51:22] 2025-11-26 16:50:48,375 | INFO     | . initial setup = 2 s
[2025-11-26 11:51:22] 2025-11-26 16:50:48,375 | INFO     | . payload setup = 7 s
[2025-11-26 11:51:22] 2025-11-26 16:50:48,375 | INFO     | . stage-in = 0 s
[2025-11-26 11:51:22] 2025-11-26 16:50:48,375 | INFO     | . payload execution = 12734 s
[2025-11-26 11:51:22] 2025-11-26 16:50:48,375 | INFO     | . stage-out = 2 s
[2025-11-26 11:51:22] 2025-11-26 16:50:48,375 | INFO     | . log creation = 0 s
[2025-11-26 11:51:22] 2025-11-26 16:50:48,375 | INFO     | ..............................
[2025-11-26 11:51:22] 2025-11-26 16:50:48,456 | INFO     | 
[2025-11-26 11:51:22] 2025-11-26 16:50:48,457 | INFO     | job summary report
[2025-11-26 11:51:22] 2025-11-26 16:50:48,457 | INFO     | --------------------------------------------------
[2025-11-26 11:51:22] 2025-11-26 16:50:48,457 | INFO     | PanDA job id: 6894238316
[2025-11-26 11:51:22] 2025-11-26 16:50:48,457 | INFO     | task id: 47523675
[2025-11-26 11:51:22] 2025-11-26 16:50:48,457 | INFO     | errors: (none)
[2025-11-26 11:51:22] 2025-11-26 16:50:48,458 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 11:51:22] 2025-11-26 16:50:48,458 | INFO     | pilot state: finished 
[2025-11-26 11:51:22] 2025-11-26 16:50:48,458 | INFO     | transexitcode: 0
[2025-11-26 11:51:22] 2025-11-26 16:50:48,458 | INFO     | exeerrorcode: 0
[2025-11-26 11:51:22] 2025-11-26 16:50:48,458 | INFO     | exeerrordiag: 
[2025-11-26 11:51:22] 2025-11-26 16:50:48,458 | INFO     | exitcode: 0
[2025-11-26 11:51:22] 2025-11-26 16:50:48,458 | INFO     | exitmsg: OK
[2025-11-26 11:51:22] 2025-11-26 16:50:48,459 | INFO     | cpuconsumptiontime: 145116 s
[2025-11-26 11:51:22] 2025-11-26 16:50:48,459 | INFO     | nevents: 400
[2025-11-26 11:51:22] 2025-11-26 16:50:48,459 | INFO     | neventsw: 0
[2025-11-26 11:51:22] 2025-11-26 16:50:48,459 | INFO     | pid: 29298
[2025-11-26 11:51:22] 2025-11-26 16:50:48,459 | INFO     | pgrp: 29298
[2025-11-26 11:51:22] 2025-11-26 16:50:48,459 | INFO     | corecount: 12
[2025-11-26 11:51:22] 2025-11-26 16:50:48,460 | INFO     | event service: False
[2025-11-26 11:51:22] 2025-11-26 16:50:48,460 | INFO     | sizes: {0: 2283723, 1: 2283978, 6: 2284240, 12: 2284268, 12745: 2314218, 12746: 2314217, 12748: 2323399, 12751: 2323455, 12756: 2323649}
[2025-11-26 11:51:22] 2025-11-26 16:50:48,460 | INFO     | --------------------------------------------------
[2025-11-26 11:51:22] 2025-11-26 16:50:48,460 | INFO     | 
[2025-11-26 11:51:22] 2025-11-26 16:50:48,460 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-26 11:51:22] 2025-11-26 16:50:48,486 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 11:51:22] 2025-11-26 16:50:48,486 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 11:51:22] 2025-11-26 16:50:48,486 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 11:51:22] 2025-11-26 16:50:48,486 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 11:51:22] 2025-11-26 16:50:48,487 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 11:51:22] 2025-11-26 16:50:48,487 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 11:51:22] 2025-11-26 16:50:48,487 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 11:51:22] 2025-11-26 16:50:48,487 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 11:51:22] 2025-11-26 16:50:48,487 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 11:51:22] 2025-11-26 16:50:48,488 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 11:51:22] 2025-11-26 16:50:48,488 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 11:51:22] 2025-11-26 16:50:48,488 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 11:51:22] 2025-11-26 16:50:48,488 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 11:51:22] 2025-11-26 16:50:48,488 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 11:51:22] 2025-11-26 16:50:48,488 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 11:51:22] 2025-11-26 16:50:48,489 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 11:51:22] 2025-11-26 16:50:48,489 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 11:51:22] 2025-11-26 16:50:48,489 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 11:51:22] 2025-11-26 16:50:48,489 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 11:51:22] 2025-11-26 16:50:48,489 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 11:51:22] 2025-11-26 16:50:48,489 | INFO     | job 6894238316 has completed (purged errors)
[2025-11-26 11:51:22] 2025-11-26 16:50:48,490 | INFO     | overall cleanup function is called
[2025-11-26 11:51:22] 2025-11-26 16:50:49,497 | INFO     | --- collectZombieJob: --- 10, [29298]
[2025-11-26 11:51:22] 2025-11-26 16:50:49,497 | INFO     | zombie collector waiting for pid 29298
[2025-11-26 11:51:22] 2025-11-26 16:50:49,497 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 11:51:22] 2025-11-26 16:50:49,498 | INFO     | collected zombie processes
[2025-11-26 11:51:22] 2025-11-26 16:50:49,498 | INFO     | will attempt to kill all subprocesses of pid=29298
[2025-11-26 11:51:22] 2025-11-26 16:50:49,589 | INFO     | process IDs to be killed: [29298] (in reverse order)
[2025-11-26 11:51:22] 2025-11-26 16:50:49,642 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 11:51:22] 2025-11-26 16:50:49,642 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 11:51:22] 2025-11-26 16:50:49,646 | INFO     | did not find any defunct processes belonging to 29298
[2025-11-26 11:51:22] 2025-11-26 16:50:49,648 | INFO     | did not find any defunct processes belonging to 29298
[2025-11-26 11:51:22] 2025-11-26 16:50:49,650 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 11:51:22] 2025-11-26 16:50:49,650 | INFO     | ready for new job
[2025-11-26 11:51:22] 2025-11-26 16:50:49,650 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 11:51:22] 2025-11-26 16:50:49,652 | INFO     | ***************************************
[2025-11-26 11:51:22] 2025-11-26 16:50:49,652 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 11:51:22] 2025-11-26 16:50:49,652 | INFO     | ***************************************
[2025-11-26 11:51:22] 2025-11-26 16:50:49,652 | INFO     | 
[2025-11-26 11:51:22] 2025-11-26 16:50:49,653 | INFO     | architecture information:
[2025-11-26 11:51:22] 2025-11-26 16:50:49,654 | INFO     | executing command: cat /etc/os-release
[2025-11-26 11:51:22] 2025-11-26 16:50:49,669 | INFO     | cat /etc/os-release:
[2025-11-26 11:51:22] NAME="CentOS Linux"
[2025-11-26 11:51:22] VERSION="7 (Core)"
[2025-11-26 11:51:22] ID="centos"
[2025-11-26 11:51:22] ID_LIKE="rhel fedora"
[2025-11-26 11:51:22] VERSION_ID="7"
[2025-11-26 11:51:22] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 11:51:22] ANSI_COLOR="0;31"
[2025-11-26 11:51:22] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 11:51:22] HOME_URL="https://www.centos.org/"
[2025-11-26 11:51:22] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 11:51:22] 
[2025-11-26 11:51:22] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 11:51:22] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 11:51:22] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 11:51:22] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 11:51:22] 
[2025-11-26 11:51:22] 2025-11-26 16:50:49,670 | INFO     | ***************************************
[2025-11-26 11:51:22] 2025-11-26 16:50:50,173 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-26 11:51:22] 2025-11-26 16:50:50,191 | INFO     | sufficient remaining disk space (29116858368 B)
[2025-11-26 11:51:22] 2025-11-26 16:50:50,192 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 11:51:22] 2025-11-26 16:50:50,192 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 11:51:22] 2025-11-26 16:50:50,192 | INFO     | update_server=False
[2025-11-26 11:51:22] 2025-11-26 16:50:50,192 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 11:51:22] 2025-11-26 16:50:50,193 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 11:51:22] 2025-11-26 16:50:50,193 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 11:51:22] 2025-11-26 16:50:50,442 | INFO     | all job control threads have been joined
[2025-11-26 11:51:22] 2025-11-26 16:50:50,669 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 11:51:22] 2025-11-26 16:50:50,669 | INFO     | aborting loop
[2025-11-26 11:51:22] 2025-11-26 16:50:50,998 | INFO     | all payload control threads have been joined
[2025-11-26 11:51:22] 2025-11-26 16:50:51,027 | INFO     | all data control threads have been joined
[2025-11-26 11:51:22] 2025-11-26 16:50:51,194 | INFO     | [job] retrieve thread has finished
[2025-11-26 11:51:22] 2025-11-26 16:50:51,198 | INFO     | [job] queue monitor thread has finished
[2025-11-26 11:51:22] 2025-11-26 16:50:51,280 | INFO     | [job] validate thread has finished
[2025-11-26 11:51:22] 2025-11-26 16:50:51,381 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 11:51:22] 2025-11-26 16:50:51,445 | INFO     | [job] control thread has finished
[2025-11-26 11:51:22] 2025-11-26 16:50:51,675 | INFO     | [job] job monitor thread has finished
[2025-11-26 11:51:22] 2025-11-26 16:50:51,812 | INFO     | [payload] failed_post thread has finished
[2025-11-26 11:51:22] 2025-11-26 16:50:51,910 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 11:51:22] 2025-11-26 16:50:51,926 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 11:51:22] 2025-11-26 16:50:52,001 | INFO     | [payload] control thread has finished
[2025-11-26 11:51:22] 2025-11-26 16:50:52,030 | INFO     | [data] control thread has finished
[2025-11-26 11:51:22] 2025-11-26 16:50:52,415 | INFO     | [payload] validate_post thread has finished
[2025-11-26 11:51:22] 2025-11-26 16:50:52,617 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 11:51:22] 2025-11-26 16:50:52,692 | INFO     | [data] copytool_in thread has finished
[2025-11-26 11:51:22] 2025-11-26 16:50:53,386 | INFO     | [data] copytool_out thread has finished
[2025-11-26 11:51:22] 2025-11-26 16:50:54,199 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 11:51:22] 2025-11-26 16:51:01,185 | INFO     | job.realtimelogging is not enabled
[2025-11-26 11:51:22] 2025-11-26 16:51:02,190 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 11:51:22] 2025-11-26 16:51:17,378 | INFO     | [monitor] cgroup control has ended
[2025-11-26 11:51:22] 2025-11-26 16:51:17,505 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140083611391808)>', '<ExcThread(monitor, started 140083000747776)>']
[2025-11-26 11:51:22] 2025-11-26 16:51:20,634 | INFO     | PID=22869 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-26 11:51:22] 2025-11-26 16:51:20,635 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 11:51:22] 2025-11-26 16:51:20,635 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 11:51:22] 2025-11-26 16:51:20,635 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 11:51:22] 2025-11-26 16:51:20,635 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 11:51:22] 2025-11-26 16:51:20,635 | INFO     | [monitor] control thread has ended
[2025-11-26 11:51:22] 2025-11-26 16:51:22,530 | INFO     | all workflow threads have been joined
[2025-11-26 11:51:22] 2025-11-26 16:51:22,530 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 11:51:22] 2025-11-26 16:51:22,531 | INFO     | traces error code: 0
[2025-11-26 11:51:22] 2025-11-26 16:51:22,531 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 11:51:22] 2025-11-26 16:51:22,625 [wrapper] ==== pilot stdout END ====
[2025-11-26 11:51:22] 2025-11-26 16:51:22,629 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 11:51:22] 2025-11-26 16:51:22,633 [wrapper] pilotpid: 22869
[2025-11-26 11:51:22] 2025-11-26 16:51:22,636 [wrapper] Pilot exit status: 0
[2025-11-26 11:51:22] 2025-11-26 16:51:22,653 [wrapper] pandaids: 6894238316
[2025-11-26 11:51:22] 2025-11-26 16:51:22,695 [wrapper] cleanup supervisor_pilot 16776 22870
[2025-11-26 11:51:22] 2025-11-26 16:51:22,699 [wrapper] Test setup, not cleaning
[2025-11-26 11:51:22] 2025-11-26 16:51:22,702 [wrapper] apfmon messages muted
[2025-11-26 11:51:22] 2025-11-26 16:51:22,707 [wrapper] ==== wrapper stdout END ====
[2025-11-26 11:51:22] 2025-11-26 16:51:22,711 [wrapper] ==== wrapper stderr END ====
[2025-11-26 11:51:22]  *** Error codes and diagnostics ***
[2025-11-26 11:51:22]     "exeErrorCode": 0,
[2025-11-26 11:51:22]     "exeErrorDiag": "",
[2025-11-26 11:51:22]     "pilotErrorCode": 0,
[2025-11-26 11:51:22]     "pilotErrorDiag": "",
[2025-11-26 11:51:22]  *** Listing of results directory ***
[2025-11-26 11:51:22] total 619800
[2025-11-26 11:51:22] -rw-r--r-- 1 boincer umatlas    576529 Nov 24 23:09 pilot3.tar.gz
[2025-11-26 11:51:22] -rw-r--r-- 1 boincer umatlas      5112 Nov 24 23:38 queuedata.json
[2025-11-26 11:51:22] -rwx------ 1 boincer umatlas     36292 Nov 24 23:38 runpilot2-wrapper.sh
[2025-11-26 11:51:22] -rw-r--r-- 1 boincer umatlas       100 Nov 26 08:17 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 11:51:22] -rwxr-xr-x 1 boincer umatlas      7986 Nov 26 08:17 run_atlas
[2025-11-26 11:51:22] -rw-r--r-- 1 boincer umatlas       105 Nov 26 08:17 job.xml
[2025-11-26 11:51:22] -rw-r--r-- 2 boincer umatlas 282444322 Nov 26 08:17 EVNT.47523673._000004.pool.root.1
[2025-11-26 11:51:22] -rw-r--r-- 2 boincer umatlas     15847 Nov 26 08:17 start_atlas.sh
[2025-11-26 11:51:22] drwxrwx--x 2 boincer umatlas      4096 Nov 26 08:17 shared
[2025-11-26 11:51:22] -rw-r--r-- 2 boincer umatlas    589943 Nov 26 08:17 input.tar.gz
[2025-11-26 11:51:22] -rw-r--r-- 1 boincer umatlas         0 Nov 26 08:17 boinc_lockfile
[2025-11-26 11:51:22] -rw-r--r-- 1 boincer umatlas      2613 Nov 26 08:17 pandaJob.out
[2025-11-26 11:51:22] -rw------- 1 boincer umatlas    991830 Nov 26 08:17 agis_schedconf.cvmfs.json
[2025-11-26 11:51:22] drwx------ 5 boincer umatlas      4096 Nov 26 08:17 pilot3
[2025-11-26 11:51:22] -rw-r--r-- 1 boincer umatlas      5871 Nov 26 11:46 init_data.xml
[2025-11-26 11:51:22] -rw------- 1 boincer umatlas 343746577 Nov 26 11:49 HITS.47523675._000096.pool.root.1
[2025-11-26 11:51:22] -rw-r--r-- 1 boincer umatlas       531 Nov 26 11:50 boinc_task_state.xml
[2025-11-26 11:51:22] -rw------- 1 boincer umatlas      1052 Nov 26 11:50 memory_monitor_summary.json
[2025-11-26 11:51:22] -rw------- 1 boincer umatlas   1516240 Nov 26 11:50 agis_ddmendpoints.agis.ALL.json
[2025-11-26 11:51:22] -rw------- 1 boincer umatlas    512788 Nov 26 11:50 log.47523675._000096.job.log.tgz.1
[2025-11-26 11:51:22] -rw------- 1 boincer umatlas      7855 Nov 26 11:50 heartbeat.json
[2025-11-26 11:51:22] -rw-r--r-- 1 boincer umatlas      8192 Nov 26 11:51 boinc_mmap_file
[2025-11-26 11:51:22] -rw-r--r-- 1 boincer umatlas        29 Nov 26 11:51 wrapper_checkpoint.txt
[2025-11-26 11:51:22] -rw------- 1 boincer umatlas        95 Nov 26 11:51 pilot_heartbeat.json
[2025-11-26 11:51:22] -rw------- 1 boincer umatlas      4818 Nov 26 11:51 pilotlog.txt
[2025-11-26 11:51:22] -rw------- 1 boincer umatlas   1769974 Nov 26 11:51 log.47523675._000096.job.log.1
[2025-11-26 11:51:22] -rw------- 1 boincer umatlas       357 Nov 26 11:51 output.list
[2025-11-26 11:51:22] -rw-r--r-- 1 boincer umatlas       620 Nov 26 11:51 runtime_log
[2025-11-26 11:51:22] -rw------- 1 boincer umatlas   2304000 Nov 26 11:51 result.tar.gz
[2025-11-26 11:51:22] -rw------- 1 boincer umatlas       666 Nov 26 11:51 ysJKDmY0zh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmdKJKDmw3toDm.diag
[2025-11-26 11:51:22] -rw-r--r-- 1 boincer umatlas      8820 Nov 26 11:51 runtime_log.err
[2025-11-26 11:51:22] -rw-r--r-- 1 boincer umatlas     21176 Nov 26 11:51 stderr.txt
[2025-11-26 11:51:22] HITS file was successfully produced:
[2025-11-26 11:51:22] -rw------- 1 boincer umatlas 343746577 Nov 26 11:49 shared/HITS.pool.root.1
[2025-11-26 11:51:22]  *** Contents of shared directory: ***
[2025-11-26 11:51:22] total 614372
[2025-11-26 11:51:22] -rw-r--r-- 2 boincer umatlas 282444322 Nov 26 08:17 ATLAS.root_0
[2025-11-26 11:51:22] -rw-r--r-- 2 boincer umatlas     15847 Nov 26 08:17 start_atlas.sh
[2025-11-26 11:51:22] -rw-r--r-- 2 boincer umatlas    589943 Nov 26 08:17 input.tar.gz
[2025-11-26 11:51:22] -rw------- 1 boincer umatlas 343746577 Nov 26 11:49 HITS.pool.root.1
[2025-11-26 11:51:22] -rw------- 1 boincer umatlas   2304000 Nov 26 11:51 result.tar.gz
11:51:24 (19199): run_atlas exited; CPU time 145018.935410
11:51:24 (19199): called boinc_finish(0)

</stderr_txt>
]]>

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