Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
15:27:12 (4020491): wrapper (7.7.26015): starting
15:27:12 (4020491): wrapper: running run_atlas (--nthreads 3)
[2025-11-26 15:27:12] Arguments: --nthreads 3
[2025-11-26 15:27:12] Threads: 3
[2025-11-26 15:27:12] Checking for CVMFS
[2025-11-26 15:27:12] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 15:27:12] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 15:27:12] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 15:27:13] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 15:27:13] 2.9.2.0 2184780 896 72964 153324 3 88 35676662 36864001 0 130560 0 5458342 99.999 30399 27288 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-26 15:27:13] CVMFS is ok
[2025-11-26 15:27:13] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 15:27:13] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 15:27:13] Further information can be found at the LHC@home message board.
[2025-11-26 15:27:13] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 15:27:13] Checking for apptainer binary...
[2025-11-26 15:27:13] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 15:27:13] Running /usr/bin/apptainer --version
[2025-11-26 15:27:13] apptainer version 1.4.1-1.1
[2025-11-26 15:27:13] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 15:27:13] thA335
[2025-11-26 15:27:13] apptainer works
[2025-11-26 15:27:13] Set ATHENA_PROC_NUMBER=3
[2025-11-26 15:27:13] Set ATHENA_CORE_NUMBER=3
[2025-11-26 15:27:13] Starting ATLAS job with PandaID=6896297925
[2025-11-26 15:27:13] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 15:31:30]  *** The last 200 lines of the pilot log: ***
[2025-11-26 15:31:30] 2025-11-26 14:30:42,228 | INFO     | update_server=False
[2025-11-26 15:31:30] 2025-11-26 14:30:42,228 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 15:31:30] 2025-11-26 14:30:42,228 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 15:31:30] 2025-11-26 14:30:42,228 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 15:31:30] 2025-11-26 14:30:42,633 | INFO     | all data control threads have been joined
[2025-11-26 15:31:30] 2025-11-26 14:30:42,727 | INFO     | all payload control threads have been joined
[2025-11-26 15:31:30] 2025-11-26 14:30:42,727 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 15:31:30] 2025-11-26 14:30:42,728 | INFO     | aborting loop
[2025-11-26 15:31:30] 2025-11-26 14:30:43,234 | INFO     | [job] queue monitor thread has finished
[2025-11-26 15:31:30] 2025-11-26 14:30:43,235 | INFO     | [job] retrieve thread has finished
[2025-11-26 15:31:30] 2025-11-26 14:30:43,235 | INFO     | [payload] failed_post thread has finished
[2025-11-26 15:31:30] 2025-11-26 14:30:43,318 | INFO     | [data] copytool_in thread has finished
[2025-11-26 15:31:30] 2025-11-26 14:30:43,472 | INFO     | [payload] validate_post thread has finished
[2025-11-26 15:31:30] 2025-11-26 14:30:43,505 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 15:31:30] 2025-11-26 14:30:43,639 | INFO     | [data] control thread has finished
[2025-11-26 15:31:30] 2025-11-26 14:30:43,670 | INFO     | [job] validate thread has finished
[2025-11-26 15:31:30] 2025-11-26 14:30:43,676 | INFO     | all job control threads have been joined
[2025-11-26 15:31:30] 2025-11-26 14:30:43,733 | INFO     | [payload] control thread has finished
[2025-11-26 15:31:30] 2025-11-26 14:30:43,734 | INFO     | [job] job monitor thread has finished
[2025-11-26 15:31:30] 2025-11-26 14:30:43,744 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 15:31:30] 2025-11-26 14:30:43,808 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 15:31:30] 2025-11-26 14:30:44,157 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 15:31:30] 2025-11-26 14:30:44,529 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 15:31:30] 2025-11-26 14:30:44,682 | INFO     | [job] control thread has finished
[2025-11-26 15:31:30] 2025-11-26 14:30:45,511 | INFO     | [data] copytool_out thread has finished
[2025-11-26 15:31:30] 2025-11-26 14:30:46,235 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 15:31:30] 2025-11-26 14:31:12,819 | INFO     | PID=4024234 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 15:31:30] 2025-11-26 14:31:12,819 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 15:31:30] 2025-11-26 14:31:12,819 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 15:31:30] 2025-11-26 14:31:12,819 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 15:31:30] 2025-11-26 14:31:23,908 | INFO     | [monitor] cgroup control has ended
[2025-11-26 15:31:30] 2025-11-26 14:31:25,597 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139832749614912)>', '<ExcThread(monitor, started 139831963272960)>']
[2025-11-26 15:31:30] 2025-11-26 14:31:25,889 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 15:31:30] 2025-11-26 14:31:25,890 | INFO     | [monitor] control thread has ended
[2025-11-26 15:31:30] 2025-11-26 14:31:30,622 | INFO     | all workflow threads have been joined
[2025-11-26 15:31:30] 2025-11-26 14:31:30,622 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 15:31:30] 2025-11-26 14:31:30,623 | INFO     | traces error code: 0
[2025-11-26 15:31:30] 2025-11-26 14:31:30,623 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 15:31:30] 2025-11-26 14:31:30,667 [wrapper] ==== pilot stdout END ====
[2025-11-26 15:31:30] 2025-11-26 14:31:30,671 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 15:31:30] 2025-11-26 14:31:30,674 [wrapper] pilotpid: 4024234
[2025-11-26 15:31:30] 2025-11-26 14:31:30,677 [wrapper] Pilot exit status: 0
[2025-11-26 15:31:30] 2025-11-26 14:31:30,684 [wrapper] pandaids: 6896297925
[2025-11-26 15:31:30] 2025-11-26 14:31:30,701 [wrapper] cleanup supervisor_pilot 4024240 4024235
[2025-11-26 15:31:30] 2025-11-26 14:31:30,704 [wrapper] Test setup, not cleaning
[2025-11-26 15:31:30] 2025-11-26 14:31:30,706 [wrapper] apfmon messages muted
[2025-11-26 15:31:30] 2025-11-26 14:31:30,709 [wrapper] ==== wrapper stdout END ====
[2025-11-26 15:31:30] 2025-11-26 14:31:30,711 [wrapper] ==== wrapper stderr END ====
[2025-11-26 15:31:30]  *** Error codes and diagnostics ***
[2025-11-26 15:31:30]     "exeErrorCode": 65,
[2025-11-26 15:31:30]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-26 15:31:30]     "pilotErrorCode": 1305,
[2025-11-26 15:31:30]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-26 15:31:30]  *** Listing of results directory ***
[2025-11-26 15:31:30] total 406596
[2025-11-26 15:31:30] -rw-r--r-- 1 boinc boinc    576529 Nov 25 02:13 pilot3.tar.gz
[2025-11-26 15:31:30] -rwx------ 1 boinc boinc     36292 Nov 25 02:53 runpilot2-wrapper.sh
[2025-11-26 15:31:30] -rw-r--r-- 1 boinc boinc      5112 Nov 25 02:53 queuedata.json
[2025-11-26 15:31:30] -rw-r--r-- 1 boinc boinc       100 Nov 26 15:27 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 15:31:30] -rwxr-xr-x 1 boinc boinc      7986 Nov 26 15:27 run_atlas
[2025-11-26 15:31:30] -rw-r--r-- 1 boinc boinc       105 Nov 26 15:27 job.xml
[2025-11-26 15:31:30] -rw-r--r-- 2 boinc boinc 412154698 Nov 26 15:27 EVNT.47483658._001476.pool.root.1
[2025-11-26 15:31:30] -rw-r--r-- 2 boinc boinc    590100 Nov 26 15:27 input.tar.gz
[2025-11-26 15:31:30] -rw-r--r-- 2 boinc boinc     15847 Nov 26 15:27 start_atlas.sh
[2025-11-26 15:31:30] drwxrwx--x 2 boinc boinc      4096 Nov 26 15:27 shared
[2025-11-26 15:31:30] -rw-r--r-- 1 boinc boinc         0 Nov 26 15:27 boinc_setup_complete
[2025-11-26 15:31:30] -rw-r--r-- 1 boinc boinc      6196 Nov 26 15:27 init_data.xml
[2025-11-26 15:31:30] -rw-r--r-- 1 boinc boinc         0 Nov 26 15:27 boinc_lockfile
[2025-11-26 15:31:30] -rw-r--r-- 1 boinc boinc      2785 Nov 26 15:27 pandaJob.out
[2025-11-26 15:31:30] -rw------- 1 boinc boinc    992360 Nov 26 15:27 agis_schedconf.cvmfs.json
[2025-11-26 15:31:30] -rw------- 1 boinc boinc   1516240 Nov 26 15:27 agis_ddmendpoints.agis.ALL.json
[2025-11-26 15:31:30] drwx------ 5 boinc boinc      4096 Nov 26 15:27 pilot3
[2025-11-26 15:31:30] -rw-r--r-- 1 boinc boinc       522 Nov 26 15:28 boinc_task_state.xml
[2025-11-26 15:31:30] -rw------- 1 boinc boinc       958 Nov 26 15:28 memory_monitor_summary.json
[2025-11-26 15:31:30] -rw------- 1 boinc boinc     55613 Nov 26 15:28 log.47556149._004629.job.log.tgz.1
[2025-11-26 15:31:30] -rw------- 1 boinc boinc        95 Nov 26 15:30 pilot_heartbeat.json
[2025-11-26 15:31:30] -rw------- 1 boinc boinc      8402 Nov 26 15:30 heartbeat.json
[2025-11-26 15:31:30] -rw-r--r-- 1 boinc boinc      8192 Nov 26 15:31 boinc_mmap_file
[2025-11-26 15:31:30] -rw-r--r-- 1 boinc boinc        22 Nov 26 15:31 wrapper_checkpoint.txt
[2025-11-26 15:31:30] -rw------- 1 boinc boinc      4752 Nov 26 15:31 pilotlog.txt
[2025-11-26 15:31:30] -rw------- 1 boinc boinc     93874 Nov 26 15:31 log.47556149._004629.job.log.1
[2025-11-26 15:31:30] -rw------- 1 boinc boinc       186 Nov 26 15:31 output.list
[2025-11-26 15:31:30] -rw-r--r-- 1 boinc boinc       620 Nov 26 15:31 runtime_log
[2025-11-26 15:31:30] -rw------- 1 boinc boinc    174080 Nov 26 15:31 result.tar.gz
[2025-11-26 15:31:30] -rw-r--r-- 1 boinc boinc      8744 Nov 26 15:31 runtime_log.err
[2025-11-26 15:31:30] -rw------- 1 boinc boinc       649 Nov 26 15:31 JipMDm7Pxh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmOHJKDmocyT7m.diag
[2025-11-26 15:31:30] -rw-r--r-- 1 boinc boinc      7790 Nov 26 15:31 stderr.txt
[2025-11-26 15:31:30] No HITS result produced
[2025-11-26 15:31:30]  *** Contents of shared directory: ***
[2025-11-26 15:31:30] total 403268
[2025-11-26 15:31:30] -rw-r--r-- 2 boinc boinc 412154698 Nov 26 15:27 ATLAS.root_0
[2025-11-26 15:31:30] -rw-r--r-- 2 boinc boinc    590100 Nov 26 15:27 input.tar.gz
[2025-11-26 15:31:30] -rw-r--r-- 2 boinc boinc     15847 Nov 26 15:27 start_atlas.sh
[2025-11-26 15:31:30] -rw------- 1 boinc boinc    174080 Nov 26 15:31 result.tar.gz
15:31:32 (4020491): run_atlas exited; CPU time 31.710211
15:31:32 (4020491): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN