Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
07:14:03 (4185572): wrapper (7.7.26015): starting
07:14:03 (4185572): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 07:14:03] Arguments: --nthreads 8
[2025-11-26 07:14:03] Threads: 8
[2025-11-26 07:14:03] Checking for CVMFS
[2025-11-26 07:14:04] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 07:14:04] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 07:14:04] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 07:14:05] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 07:14:05] 2.13.3.0 9438 30013 266100 153321 0 586 40733183 40960001 71879 16776704 0 411765847 99.749 254188043 48124 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 07:14:05] CVMFS is ok
[2025-11-26 07:14:05] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 07:14:05] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 07:14:05] Further information can be found at the LHC@home message board.
[2025-11-26 07:14:05] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 07:14:05] Checking for apptainer binary...
[2025-11-26 07:14:05] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 07:14:05] Running /usr/bin/apptainer --version
[2025-11-26 07:14:05] apptainer version 1.4.4-1.el9
[2025-11-26 07:14:05] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 07:14:06] c8-7-3.aglt2.org
[2025-11-26 07:14:06] apptainer works
[2025-11-26 07:14:06] Set ATHENA_PROC_NUMBER=8
[2025-11-26 07:14:06] Set ATHENA_CORE_NUMBER=8
[2025-11-26 07:14:06] Starting ATLAS job with PandaID=6892523187
[2025-11-26 07:14:06] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 15:18:15]  *** The last 200 lines of the pilot log: ***
[2025-11-26 15:18:15] 2025-11-26 20:17:29,511 | INFO     | PID=8745 has CPU usage=4.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-26 15:18:15] 2025-11-26 20:17:29,513 | INFO     | .. there are 110 such processes running
[2025-11-26 15:18:15] 2025-11-26 20:17:30,347 | INFO     | monitor loop #1646: job 0:6892523187 is in state 'finished'
[2025-11-26 15:18:15] 2025-11-26 20:17:30,347 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 15:18:15] 2025-11-26 20:17:30,515 | INFO     | time since job start (28954s) is within the limit (172800.0s)
[2025-11-26 15:18:15] 2025-11-26 20:17:32,526 | INFO     | time since job start (28956s) is within the limit (172800.0s)
[2025-11-26 15:18:15] 2025-11-26 20:17:32,852 | INFO     | monitor loop #1647: job 0:6892523187 is in state 'finished'
[2025-11-26 15:18:15] 2025-11-26 20:17:32,852 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 15:18:15] 2025-11-26 20:17:34,538 | INFO     | time since job start (28958s) is within the limit (172800.0s)
[2025-11-26 15:18:15] 2025-11-26 20:17:35,358 | INFO     | monitor loop #1648: job 0:6892523187 is in state 'finished'
[2025-11-26 15:18:15] 2025-11-26 20:17:35,358 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 15:18:15] 2025-11-26 20:17:36,552 | INFO     | time since job start (28960s) is within the limit (172800.0s)
[2025-11-26 15:18:15] 2025-11-26 20:17:37,863 | INFO     | monitor loop #1649: job 0:6892523187 is in state 'finished'
[2025-11-26 15:18:15] 2025-11-26 20:17:37,863 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 15:18:15] 2025-11-26 20:17:38,559 | INFO     | time since job start (28962s) is within the limit (172800.0s)
[2025-11-26 15:18:15] 2025-11-26 20:17:38,559 | INFO     | 28966s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-26 15:18:15] 2025-11-26 20:17:40,211 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-26 15:18:15] 2025-11-26 20:17:40,216 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3800.1335703124996
[2025-11-26 15:18:15] 2025-11-26 20:17:40,230 | INFO     | using path: /tmp/boinchome/slots/9/PanDA_Pilot-6892523187/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 15:18:15] 2025-11-26 20:17:40,230 | INFO     | extracted standard info from prmon json
[2025-11-26 15:18:15] 2025-11-26 20:17:40,231 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 15:18:15] 2025-11-26 20:17:40,231 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 15:18:15] 2025-11-26 20:17:40,239 | INFO     | fitting pss+swap vs Time
[2025-11-26 15:18:15] 2025-11-26 20:17:40,239 | INFO     | sum of square deviations: 32606219788.203224
[2025-11-26 15:18:15] 2025-11-26 20:17:40,246 | INFO     | sum of deviations: -511680098193.4068
[2025-11-26 15:18:15] 2025-11-26 20:17:40,247 | INFO     | mean x: 1764173779.6440678
[2025-11-26 15:18:15] 2025-11-26 20:17:40,247 | INFO     | mean y: 2730241.5868644067
[2025-11-26 15:18:15] 2025-11-26 20:17:40,247 | INFO     | intersect: 27687405701.11683
[2025-11-26 15:18:15] 2025-11-26 20:17:40,247 | INFO     | chi2: 27.53971375111606
[2025-11-26 15:18:15] 2025-11-26 20:17:40,247 | INFO     | sum of square deviations: 31581100141.588783
[2025-11-26 15:18:15] 2025-11-26 20:17:40,254 | INFO     | sum of deviations: -365413145798.18445
[2025-11-26 15:18:15] 2025-11-26 20:17:40,254 | INFO     | mean x: 1764173627.156317
[2025-11-26 15:18:15] 2025-11-26 20:17:40,254 | INFO     | mean y: 2752004.8929336187
[2025-11-26 15:18:15] 2025-11-26 20:17:40,254 | INFO     | intersect: 20415347891.14099
[2025-11-26 15:18:15] 2025-11-26 20:17:40,255 | INFO     | chi2: 23.853752450178497
[2025-11-26 15:18:15] 2025-11-26 20:17:40,255 | INFO     | current chi2=23.853752450178497 (change=13.3841670768571 %)
[2025-11-26 15:18:15] 2025-11-26 20:17:40,255 | INFO     | right removable region: 466
[2025-11-26 15:18:15] 2025-11-26 20:17:40,255 | INFO     | sum of square deviations: 31580799290.89935
[2025-11-26 15:18:15] 2025-11-26 20:17:40,262 | INFO     | sum of deviations: -643683587982.5631
[2025-11-26 15:18:15] 2025-11-26 20:17:40,262 | INFO     | mean x: 1764173932.1541755
[2025-11-26 15:18:15] 2025-11-26 20:17:40,262 | INFO     | mean y: 2749829.1605995717
[2025-11-26 15:18:15] 2025-11-26 20:17:40,262 | INFO     | intersect: 35960351662.29546
[2025-11-26 15:18:15] 2025-11-26 20:17:40,263 | INFO     | chi2: 25.154989745995184
[2025-11-26 15:18:15] 2025-11-26 20:17:40,263 | INFO     | current chi2=25.154989745995184 (change=8.659218562227192 %)
[2025-11-26 15:18:15] 2025-11-26 20:17:40,263 | INFO     | left removable region: 10
[2025-11-26 15:18:15] 2025-11-26 20:17:40,263 | INFO     | sum of square deviations: 29401478878.657974
[2025-11-26 15:18:15] 2025-11-26 20:17:40,270 | INFO     | sum of deviations: -488834240484.86835
[2025-11-26 15:18:15] 2025-11-26 20:17:40,270 | INFO     | mean x: 1764173901.6710527
[2025-11-26 15:18:15] 2025-11-26 20:17:40,270 | INFO     | mean y: 2780970.600877193
[2025-11-26 15:18:15] 2025-11-26 20:17:40,270 | INFO     | intersect: 29334251433.897495
[2025-11-26 15:18:15] 2025-11-26 20:17:40,270 | INFO     | chi2: 20.448018282909352
[2025-11-26 15:18:15] 2025-11-26 20:17:40,270 | INFO     | current memory leak: -16.63 B/s (using 456 data points, chi2=20.45)
[2025-11-26 15:18:15] 2025-11-26 20:17:40,271 | INFO     | could have reported an average CPU frequency of 3800 MHz (19 samples)
[2025-11-26 15:18:15] 2025-11-26 20:17:40,271 | INFO     | ..............................
[2025-11-26 15:18:15] 2025-11-26 20:17:40,271 | INFO     | . Timing measurements:
[2025-11-26 15:18:15] 2025-11-26 20:17:40,271 | INFO     | . get job = 0 s
[2025-11-26 15:18:15] 2025-11-26 20:17:40,271 | INFO     | . initial setup = 3 s
[2025-11-26 15:18:15] 2025-11-26 20:17:40,271 | INFO     | . payload setup = 33 s
[2025-11-26 15:18:15] 2025-11-26 20:17:40,271 | INFO     | . stage-in = 0 s
[2025-11-26 15:18:15] 2025-11-26 20:17:40,271 | INFO     | . payload execution = 28812 s
[2025-11-26 15:18:15] 2025-11-26 20:17:40,271 | INFO     | . stage-out = 5 s
[2025-11-26 15:18:15] 2025-11-26 20:17:40,271 | INFO     | . log creation = 1 s
[2025-11-26 15:18:15] 2025-11-26 20:17:40,271 | INFO     | ..............................
[2025-11-26 15:18:15] 2025-11-26 20:17:40,387 | INFO     | 
[2025-11-26 15:18:15] 2025-11-26 20:17:40,387 | INFO     | job summary report
[2025-11-26 15:18:15] 2025-11-26 20:17:40,387 | INFO     | --------------------------------------------------
[2025-11-26 15:18:15] 2025-11-26 20:17:40,387 | INFO     | PanDA job id: 6892523187
[2025-11-26 15:18:15] 2025-11-26 20:17:40,387 | INFO     | task id: 47493029
[2025-11-26 15:18:15] 2025-11-26 20:17:40,387 | INFO     | errors: (none)
[2025-11-26 15:18:15] 2025-11-26 20:17:40,387 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 15:18:15] 2025-11-26 20:17:40,387 | INFO     | pilot state: finished 
[2025-11-26 15:18:15] 2025-11-26 20:17:40,387 | INFO     | transexitcode: 0
[2025-11-26 15:18:15] 2025-11-26 20:17:40,387 | INFO     | exeerrorcode: 0
[2025-11-26 15:18:15] 2025-11-26 20:17:40,387 | INFO     | exeerrordiag: 
[2025-11-26 15:18:15] 2025-11-26 20:17:40,387 | INFO     | exitcode: 0
[2025-11-26 15:18:15] 2025-11-26 20:17:40,387 | INFO     | exitmsg: OK
[2025-11-26 15:18:15] 2025-11-26 20:17:40,387 | INFO     | cpuconsumptiontime: 135556 s
[2025-11-26 15:18:15] 2025-11-26 20:17:40,387 | INFO     | nevents: 1000
[2025-11-26 15:18:15] 2025-11-26 20:17:40,387 | INFO     | neventsw: 0
[2025-11-26 15:18:15] 2025-11-26 20:17:40,388 | INFO     | pid: 49601
[2025-11-26 15:18:15] 2025-11-26 20:17:40,388 | INFO     | pgrp: 49601
[2025-11-26 15:18:15] 2025-11-26 20:17:40,388 | INFO     | corecount: 8
[2025-11-26 15:18:15] 2025-11-26 20:17:40,388 | INFO     | event service: False
[2025-11-26 15:18:15] 2025-11-26 20:17:40,388 | INFO     | sizes: {0: 2284129, 1: 2284328, 12: 2284328, 22: 2284356, 23: 2284646, 33: 2284674, 28850: 2322552, 28856: 2331546, 28859: 2331602, 28905: 2331848}
[2025-11-26 15:18:15] 2025-11-26 20:17:40,388 | INFO     | --------------------------------------------------
[2025-11-26 15:18:15] 2025-11-26 20:17:40,388 | INFO     | 
[2025-11-26 15:18:15] 2025-11-26 20:17:40,388 | INFO     | executing command: ls -lF /tmp/boinchome/slots/9
[2025-11-26 15:18:15] 2025-11-26 20:17:40,573 | INFO     | time since job start (28964s) is within the limit (172800.0s)
[2025-11-26 15:18:15] 2025-11-26 20:17:40,590 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 15:18:15] 2025-11-26 20:17:40,591 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 15:18:15] 2025-11-26 20:17:40,591 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 15:18:15] 2025-11-26 20:17:40,591 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 15:18:15] 2025-11-26 20:17:40,591 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 15:18:15] 2025-11-26 20:17:40,591 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 15:18:15] 2025-11-26 20:17:40,591 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 15:18:15] 2025-11-26 20:17:40,591 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 15:18:15] 2025-11-26 20:17:40,591 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 15:18:15] 2025-11-26 20:17:40,591 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 15:18:15] 2025-11-26 20:17:40,591 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 15:18:15] 2025-11-26 20:17:40,591 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 15:18:15] 2025-11-26 20:17:40,591 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 15:18:15] 2025-11-26 20:17:40,591 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 15:18:15] 2025-11-26 20:17:40,591 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 15:18:15] 2025-11-26 20:17:40,591 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 15:18:15] 2025-11-26 20:17:40,591 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 15:18:15] 2025-11-26 20:17:40,591 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 15:18:15] 2025-11-26 20:17:40,591 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 15:18:15] 2025-11-26 20:17:40,591 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 15:18:15] 2025-11-26 20:17:40,591 | INFO     | job 6892523187 has completed (purged errors)
[2025-11-26 15:18:15] 2025-11-26 20:17:40,591 | INFO     | overall cleanup function is called
[2025-11-26 15:18:15] 2025-11-26 20:17:41,621 | INFO     | --- collectZombieJob: --- 10, [49601]
[2025-11-26 15:18:15] 2025-11-26 20:17:41,621 | INFO     | zombie collector waiting for pid 49601
[2025-11-26 15:18:15] 2025-11-26 20:17:41,621 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 15:18:15] 2025-11-26 20:17:41,621 | INFO     | collected zombie processes
[2025-11-26 15:18:15] 2025-11-26 20:17:41,621 | INFO     | will attempt to kill all subprocesses of pid=49601
[2025-11-26 15:18:15] 2025-11-26 20:17:43,172 | INFO     | process IDs to be killed: [49601] (in reverse order)
[2025-11-26 15:18:15] 2025-11-26 20:17:43,567 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 15:18:15] 2025-11-26 20:17:43,568 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 15:18:15] 2025-11-26 20:17:43,659 | INFO     | did not find any defunct processes belonging to 49601
[2025-11-26 15:18:15] 2025-11-26 20:17:43,774 | INFO     | did not find any defunct processes belonging to 49601
[2025-11-26 15:18:15] 2025-11-26 20:17:43,785 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 15:18:15] 2025-11-26 20:17:43,785 | INFO     | ready for new job
[2025-11-26 15:18:15] 2025-11-26 20:17:43,785 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 15:18:15] 2025-11-26 20:17:43,787 | INFO     | ***************************************
[2025-11-26 15:18:15] 2025-11-26 20:17:43,787 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 15:18:15] 2025-11-26 20:17:43,787 | INFO     | ***************************************
[2025-11-26 15:18:15] 2025-11-26 20:17:43,787 | INFO     | 
[2025-11-26 15:18:15] 2025-11-26 20:17:43,796 | INFO     | architecture information:
[2025-11-26 15:18:15] 2025-11-26 20:17:43,804 | INFO     | executing command: cat /etc/os-release
[2025-11-26 15:18:15] 2025-11-26 20:17:43,939 | INFO     | cat /etc/os-release:
[2025-11-26 15:18:15] NAME="CentOS Linux"
[2025-11-26 15:18:15] VERSION="7 (Core)"
[2025-11-26 15:18:15] ID="centos"
[2025-11-26 15:18:15] ID_LIKE="rhel fedora"
[2025-11-26 15:18:15] VERSION_ID="7"
[2025-11-26 15:18:15] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 15:18:15] ANSI_COLOR="0;31"
[2025-11-26 15:18:15] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 15:18:15] HOME_URL="https://www.centos.org/"
[2025-11-26 15:18:15] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 15:18:15] 
[2025-11-26 15:18:15] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 15:18:15] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 15:18:15] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 15:18:15] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 15:18:15] 
[2025-11-26 15:18:15] 2025-11-26 20:17:43,940 | INFO     | ***************************************
[2025-11-26 15:18:15] 2025-11-26 20:17:44,447 | INFO     | executing command: df -mP /tmp/boinchome/slots/9
[2025-11-26 15:18:15] 2025-11-26 20:17:44,570 | INFO     | sufficient remaining disk space (151066247168 B)
[2025-11-26 15:18:15] 2025-11-26 20:17:44,570 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 15:18:15] 2025-11-26 20:17:44,571 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 15:18:15] 2025-11-26 20:17:44,571 | INFO     | update_server=False
[2025-11-26 15:18:15] 2025-11-26 20:17:44,571 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 15:18:15] 2025-11-26 20:17:44,571 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 15:18:15] 2025-11-26 20:17:44,575 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 15:18:15] 2025-11-26 20:17:44,575 | INFO     | aborting loop
[2025-11-26 15:18:15] 2025-11-26 20:17:44,894 | INFO     | all data control threads have been joined
[2025-11-26 15:18:15] 2025-11-26 20:17:45,244 | INFO     | all payload control threads have been joined
[2025-11-26 15:18:15] 2025-11-26 20:17:45,334 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 15:18:15] 2025-11-26 20:17:45,405 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 15:18:15] 2025-11-26 20:17:45,577 | INFO     | [job] retrieve thread has finished
[2025-11-26 15:18:15] 2025-11-26 20:17:45,581 | INFO     | [job] job monitor thread has finished
[2025-11-26 15:18:15] 2025-11-26 20:17:45,728 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 15:18:15] 2025-11-26 20:17:45,900 | INFO     | [data] control thread has finished
[2025-11-26 15:18:15] 2025-11-26 20:17:45,933 | INFO     | [payload] validate_post thread has finished
[2025-11-26 15:18:15] 2025-11-26 20:17:45,937 | INFO     | [payload] failed_post thread has finished
[2025-11-26 15:18:15] 2025-11-26 20:17:45,997 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 15:18:15] 2025-11-26 20:17:46,200 | INFO     | all job control threads have been joined
[2025-11-26 15:18:15] 2025-11-26 20:17:46,250 | INFO     | [payload] control thread has finished
[2025-11-26 15:18:15] 2025-11-26 20:17:46,409 | INFO     | [monitor] cgroup control has ended
[2025-11-26 15:18:15] 2025-11-26 20:17:46,410 | INFO     | [job] queue monitor thread has finished
[2025-11-26 15:18:15] 2025-11-26 20:17:46,578 | INFO     | [data] copytool_out thread has finished
[2025-11-26 15:18:15] 2025-11-26 20:17:46,948 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 15:18:15] 2025-11-26 20:17:47,022 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 15:18:15] 2025-11-26 20:17:47,064 | INFO     | [data] copytool_in thread has finished
[2025-11-26 15:18:15] 2025-11-26 20:17:47,065 | INFO     | [job] validate thread has finished
[2025-11-26 15:18:15] 2025-11-26 20:17:47,206 | INFO     | [job] control thread has finished
[2025-11-26 15:18:15] 2025-11-26 20:17:49,345 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 15:18:15] 2025-11-26 20:17:50,912 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140385916168000)>', '<ExcThread(monitor, started 140385267463936)>']
[2025-11-26 15:18:15] 2025-11-26 20:17:55,938 | INFO     | all workflow threads have been joined
[2025-11-26 15:18:15] 2025-11-26 20:17:55,947 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 15:18:15] 2025-11-26 20:17:55,947 | INFO     | traces error code: 0
[2025-11-26 15:18:15] 2025-11-26 20:17:55,947 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 15:18:15] 2025-11-26 20:18:14,716 | INFO     | PID=8745 has CPU usage=4.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-26 15:18:15] 2025-11-26 20:18:14,719 | INFO     | .. there are 109 such processes running
[2025-11-26 15:18:15] 2025-11-26 20:18:14,719 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 15:18:15] 2025-11-26 20:18:14,719 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 15:18:15] 2025-11-26 20:18:14,720 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 15:18:15] 2025-11-26 20:18:14,720 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 15:18:15] 2025-11-26 20:18:14,720 | INFO     | [monitor] control thread has ended
[2025-11-26 15:18:15] 2025-11-26 20:18:14,918 [wrapper] ==== pilot stdout END ====
[2025-11-26 15:18:15] 2025-11-26 20:18:14,935 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 15:18:15] 2025-11-26 20:18:14,975 [wrapper] pilotpid: 8745
[2025-11-26 15:18:15] 2025-11-26 20:18:14,978 [wrapper] Pilot exit status: 0
[2025-11-26 15:18:15] 2025-11-26 20:18:15,059 [wrapper] pandaids: 6892523187
[2025-11-26 15:18:15] 2025-11-26 20:18:15,272 [wrapper] cleanup supervisor_pilot 1840945 8746
[2025-11-26 15:18:15] 2025-11-26 20:18:15,282 [wrapper] Test setup, not cleaning
[2025-11-26 15:18:15] 2025-11-26 20:18:15,313 [wrapper] apfmon messages muted
[2025-11-26 15:18:15] 2025-11-26 20:18:15,318 [wrapper] ==== wrapper stdout END ====
[2025-11-26 15:18:15] 2025-11-26 20:18:15,332 [wrapper] ==== wrapper stderr END ====
[2025-11-26 15:18:15]  *** Error codes and diagnostics ***
[2025-11-26 15:18:15]     "exeErrorCode": 0,
[2025-11-26 15:18:15]     "exeErrorDiag": "",
[2025-11-26 15:18:15]     "pilotErrorCode": 0,
[2025-11-26 15:18:15]     "pilotErrorDiag": "",
[2025-11-26 15:18:15]  *** Listing of results directory ***
[2025-11-26 15:18:15] total 1313484
[2025-11-26 15:18:15] -rw-r--r--. 1 boincer umatlas    576529 Nov 19 02:00 pilot3.tar.gz
[2025-11-26 15:18:15] -rwx------. 1 boincer umatlas     36292 Nov 19 02:06 runpilot2-wrapper.sh
[2025-11-26 15:18:15] -rw-r--r--. 1 boincer umatlas      5112 Nov 19 02:07 queuedata.json
[2025-11-26 15:18:15] -rw-r--r--. 1 boincer umatlas       100 Nov 26 07:14 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 15:18:15] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 07:14 run_atlas
[2025-11-26 15:18:15] -rw-r--r--. 1 boincer umatlas       105 Nov 26 07:14 job.xml
[2025-11-26 15:18:15] -rw-r--r--. 2 boincer umatlas 410905513 Nov 26 07:14 EVNT.47493027._000064.pool.root.1
[2025-11-26 15:18:15] -rw-r--r--. 2 boincer umatlas     15120 Nov 26 07:14 start_atlas.sh
[2025-11-26 15:18:15] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 07:14 shared
[2025-11-26 15:18:15] -rw-r--r--. 2 boincer umatlas    590097 Nov 26 07:14 input.tar.gz
[2025-11-26 15:18:15] -rw-r--r--. 1 boincer umatlas         0 Nov 26 07:14 boinc_lockfile
[2025-11-26 15:18:15] -rw-r--r--. 1 boincer umatlas      2771 Nov 26 07:14 pandaJob.out
[2025-11-26 15:18:15] -rw-------. 1 boincer umatlas    991830 Nov 26 07:14 agis_schedconf.cvmfs.json
[2025-11-26 15:18:15] drwx------. 5 boincer umatlas      4096 Nov 26 07:14 pilot3
[2025-11-26 15:18:15] -rw-r--r--. 1 boincer umatlas       533 Nov 26 14:43 boinc_task_state.xml
[2025-11-26 15:18:15] -rw-r--r--. 1 boincer umatlas      7173 Nov 26 15:11 init_data.xml
[2025-11-26 15:18:15] -rw-------. 1 boincer umatlas 919677110 Nov 26 15:15 HITS.47493029._000593.pool.root.1
[2025-11-26 15:18:15] -rw-------. 1 boincer umatlas      1076 Nov 26 15:16 memory_monitor_summary.json
[2025-11-26 15:18:15] -rw-------. 1 boincer umatlas   1516240 Nov 26 15:16 agis_ddmendpoints.agis.ALL.json
[2025-11-26 15:18:15] -rw-------. 1 boincer umatlas   1721388 Nov 26 15:16 log.47493029._000593.job.log.tgz.1
[2025-11-26 15:18:15] -rw-------. 1 boincer umatlas      8647 Nov 26 15:17 heartbeat.json
[2025-11-26 15:18:15] -rw-------. 1 boincer umatlas        95 Nov 26 15:18 pilot_heartbeat.json
[2025-11-26 15:18:15] -rw-------. 1 boincer umatlas       821 Nov 26 15:18 pilotlog.txt
[2025-11-26 15:18:15] -rw-------. 1 boincer umatlas   3534241 Nov 26 15:18 log.47493029._000593.job.log.1
[2025-11-26 15:18:15] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 15:18 boinc_mmap_file
[2025-11-26 15:18:15] -rw-------. 1 boincer umatlas       353 Nov 26 15:18 output.list
[2025-11-26 15:18:15] -rw-r--r--. 1 boincer umatlas        29 Nov 26 15:18 wrapper_checkpoint.txt
[2025-11-26 15:18:15] -rw-r--r--. 1 boincer umatlas       620 Nov 26 15:18 runtime_log
[2025-11-26 15:18:15] -rw-------. 1 boincer umatlas   5273600 Nov 26 15:18 result.tar.gz
[2025-11-26 15:18:15] -rw-------. 1 boincer umatlas       664 Nov 26 15:18 To2KDm6Rrf8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmXrFKDmJkqB4m.diag
[2025-11-26 15:18:15] -rw-r--r--. 1 boincer umatlas      8694 Nov 26 15:18 runtime_log.err
[2025-11-26 15:18:15] -rw-r--r--. 1 boincer umatlas     21864 Nov 26 15:18 stderr.txt
[2025-11-26 15:18:15] HITS file was successfully produced:
[2025-11-26 15:18:16] -rw-------. 1 boincer umatlas 919677110 Nov 26 15:15 shared/HITS.pool.root.1
[2025-11-26 15:18:16]  *** Contents of shared directory: ***
[2025-11-26 15:18:16] total 1305156
[2025-11-26 15:18:16] -rw-r--r--. 2 boincer umatlas 410905513 Nov 26 07:14 ATLAS.root_0
[2025-11-26 15:18:16] -rw-r--r--. 2 boincer umatlas     15120 Nov 26 07:14 start_atlas.sh
[2025-11-26 15:18:16] -rw-r--r--. 2 boincer umatlas    590097 Nov 26 07:14 input.tar.gz
[2025-11-26 15:18:16] -rw-------. 1 boincer umatlas 919677110 Nov 26 15:15 HITS.pool.root.1
[2025-11-26 15:18:16] -rw-------. 1 boincer umatlas   5273600 Nov 26 15:18 result.tar.gz
15:18:38 (4185572): run_atlas exited; CPU time 136304.838439
15:18:38 (4185572): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN