Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
04:01:45 (994504): wrapper (7.7.26015): starting
04:01:45 (994504): wrapper: running run_atlas (--nthreads 12)
[2025-11-26 04:01:45] Arguments: --nthreads 12
[2025-11-26 04:01:45] Threads: 12
[2025-11-26 04:01:45] Checking for CVMFS
[2025-11-26 04:01:46] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 04:01:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 04:01:47] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 04:01:48] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 04:01:48] 2.11.5.0 3814305 28075 171312 153320 3 437 42027635 45568000 37047 130560 0 287242545 99.803 156272032 19391 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-11-26 04:01:48] CVMFS is ok
[2025-11-26 04:01:48] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 04:01:48] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 04:01:48] Further information can be found at the LHC@home message board.
[2025-11-26 04:01:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 04:01:48] Checking for apptainer binary...
[2025-11-26 04:01:48] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 04:01:48] Running /usr/bin/apptainer --version
[2025-11-26 04:01:50] apptainer version 1.4.1-1.el9
[2025-11-26 04:01:50] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 04:01:52] wns0094.triumf.lcg
[2025-11-26 04:01:52] apptainer works
[2025-11-26 04:01:52] Set ATHENA_PROC_NUMBER=12
[2025-11-26 04:01:52] Set ATHENA_CORE_NUMBER=12
[2025-11-26 04:01:52] Starting ATLAS job with PandaID=6896989493
[2025-11-26 04:01:52] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 04:11:29]  *** The last 200 lines of the pilot log: ***
[2025-11-26 04:11:29] 2025-11-26 12:10:54,171 | INFO     | could have reported an average CPU frequency of 2728 MHz (4 samples)
[2025-11-26 04:11:29] 2025-11-26 12:10:54,172 | INFO     | ..............................
[2025-11-26 04:11:29] 2025-11-26 12:10:54,172 | INFO     | . Timing measurements:
[2025-11-26 04:11:29] 2025-11-26 12:10:54,172 | INFO     | . get job = 0 s
[2025-11-26 04:11:29] 2025-11-26 12:10:54,172 | INFO     | . initial setup = 3 s
[2025-11-26 04:11:29] 2025-11-26 12:10:54,172 | INFO     | . payload setup = 19 s
[2025-11-26 04:11:29] 2025-11-26 12:10:54,172 | INFO     | . stage-in = 0 s
[2025-11-26 04:11:29] 2025-11-26 12:10:54,172 | INFO     | . payload execution = 312 s
[2025-11-26 04:11:29] 2025-11-26 12:10:54,172 | INFO     | . stage-out = 1 s
[2025-11-26 04:11:29] 2025-11-26 12:10:54,172 | INFO     | . log creation = 0 s
[2025-11-26 04:11:29] 2025-11-26 12:10:54,172 | INFO     | ..............................
[2025-11-26 04:11:29] 2025-11-26 12:10:54,172 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-26 04:11:29] 2025-11-26 12:10:54,172 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6896989493/pilotlog.txt
[2025-11-26 04:11:29] 2025-11-26 12:10:54,338 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-26 04:11:29] - Log from pilotlog.txt -
[2025-11-26 04:11:29] 2025-11-26 12:10:54,125 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6896989493/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 04:11:29] 2025-11-26 12:10:54,126 | INFO     | extracted standard info from prmon json
[2025-11-26 04:11:29] 2025-11-26 12:10:54,126 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 04:11:29] 2025-11-26 12:10:54,126 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 04:11:29] 2025-11-26 12:10:54,126 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-26 04:11:29] 2025-11-26 12:10:54,126 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-26 04:11:29] 2025-11-26 12:10:54,127 | WARNING  | wrong length of table data, x=[1764158628.0, 1764158689.0, 1764158750.0, 1764158811.0, 1764158872.0], y=[1056.0, 204369.0, 410546.0, 833513.0, 385266.0] (must be s
[2025-11-26 04:11:29] 2025-11-26 12:10:54,171 | INFO     | could have reported an average CPU frequency of 2728 MHz (4 samples)
[2025-11-26 04:11:29] 2025-11-26 12:10:54,172 | INFO     | ..............................
[2025-11-26 04:11:29] 2025-11-26 12:10:54,172 | INFO     | . Timing measurements:
[2025-11-26 04:11:29] 2025-11-26 12:10:54,172 | INFO     | . get job = 0 s
[2025-11-26 04:11:29] 2025-11-26 12:10:54,172 | INFO     | . initial setup = 3 s
[2025-11-26 04:11:29] 2025-11-26 12:10:54,172 | INFO     | . payload setup = 19 s
[2025-11-26 04:11:29] 2025-11-26 12:10:54,172 | INFO     | . stage-in = 0 s
[2025-11-26 04:11:29] 2025-11-26 12:10:54,172 | INFO     | . payload execution = 312 s
[2025-11-26 04:11:29] 2025-11-26 12:10:54,172 | INFO     | . stage-out = 1 s
[2025-11-26 04:11:29] 2025-11-26 12:10:54,172 | INFO     | . log creation = 0 s
[2025-11-26 04:11:29] 2025-11-26 12:10:54,172 | INFO     | ..............................
[2025-11-26 04:11:29] 2025-11-26 12:10:54,172 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-26 04:11:29] 2025-11-26 12:10:54,172 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6896989493/pilotlog.txt
[2025-11-26 04:11:29] 2025-11-26 12:10:54,356 | WARNING  | 
[2025-11-26 04:11:29] [begin log extracts]
[2025-11-26 04:11:29] - Log from pilotlog.txt -
[2025-11-26 04:11:29] 2025-11-26 12:10:54,125 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6896989493/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 04:11:29] 2025-11-26 12:10:54,126 | INFO     | extracted standard info from prmon json
[2025-11-26 04:11:29] 2025-11-26 12:10:54,126 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 04:11:29] 2025-11-26 12:10:54,126 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 04:11:29] 2025-11-26 12:10:54,126 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-26 04:11:29] 2025-11-26 12:10:54,126 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-26 04:11:29] 2025-11-26 12:10:54,127 | WARNING  | wrong length of table data, x=[1764158628.0, 1764158689.0, 1764158750.0, 1764158811.0, 1764158872.0], y=[1056.0, 204369.0, 410546.0, 833513.0, 385266.0] (must be s
[2025-11-26 04:11:29] 2025-11-26 12:10:54,171 | INFO     | could have reported an average CPU frequency of 2728 MHz (4 samples)
[2025-11-26 04:11:29] 2025-11-26 12:10:54,172 | INFO     | ..............................
[2025-11-26 04:11:29] 2025-11-26 12:10:54,172 | INFO     | . Timing measurements:
[2025-11-26 04:11:29] 2025-11-26 12:10:54,172 | INFO     | . get job = 0 s
[2025-11-26 04:11:29] 2025-11-26 12:10:54,172 | INFO     | . initial setup = 3 s
[2025-11-26 04:11:29] 2025-11-26 12:10:54,172 | INFO     | . payload setup = 19 s
[2025-11-26 04:11:29] 2025-11-26 12:10:54,172 | INFO     | . stage-in = 0 s
[2025-11-26 04:11:29] 2025-11-26 12:10:54,172 | INFO     | . payload execution = 312 s
[2025-11-26 04:11:29] 2025-11-26 12:10:54,172 | INFO     | . stage-out = 1 s
[2025-11-26 04:11:29] 2025-11-26 12:10:54,172 | INFO     | . log creation = 0 s
[2025-11-26 04:11:29] 2025-11-26 12:10:54,172 | INFO     | ..............................
[2025-11-26 04:11:29] 2025-11-26 12:10:54,172 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-26 04:11:29] 2025-11-26 12:10:54,172 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6896989493/pilotlog.txt
[2025-11-26 04:11:29] [end log extracts]
[2025-11-26 04:11:29] 2025-11-26 12:10:54,356 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-26 04:11:29] 2025-11-26 12:10:54,357 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-26 04:11:29] 2025-11-26 12:10:55,330 | INFO     | 
[2025-11-26 04:11:29] 2025-11-26 12:10:55,330 | INFO     | job summary report
[2025-11-26 04:11:29] 2025-11-26 12:10:55,330 | INFO     | --------------------------------------------------
[2025-11-26 04:11:29] 2025-11-26 12:10:55,330 | INFO     | PanDA job id: 6896989493
[2025-11-26 04:11:29] 2025-11-26 12:10:55,330 | INFO     | task id: 47556161
[2025-11-26 04:11:29] 2025-11-26 12:10:55,330 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-26 04:08:27,665 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-26 04:11:29] 2025-11-26 12:10:55,330 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-26 04:11:29] 2025-11-26 12:10:55,331 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 04:11:29] 2025-11-26 12:10:55,331 | INFO     | pilot state: failed 
[2025-11-26 04:11:29] 2025-11-26 12:10:55,331 | INFO     | transexitcode: 65
[2025-11-26 04:11:29] 2025-11-26 12:10:55,331 | INFO     | exeerrorcode: 65
[2025-11-26 04:11:29] 2025-11-26 12:10:55,331 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-11-26 04:11:29] 2025-11-26 12:10:55,331 | INFO     | exitcode: 65
[2025-11-26 04:11:29] 2025-11-26 12:10:55,331 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-11-26 04:11:29] 2025-11-26 12:10:55,331 | INFO     | cpuconsumptiontime: 47 s
[2025-11-26 04:11:29] 2025-11-26 12:10:55,331 | INFO     | nevents: 0
[2025-11-26 04:11:29] 2025-11-26 12:10:55,331 | INFO     | neventsw: 0
[2025-11-26 04:11:29] 2025-11-26 12:10:55,331 | INFO     | pid: 1019612
[2025-11-26 04:11:29] 2025-11-26 12:10:55,331 | INFO     | pgrp: 1019612
[2025-11-26 04:11:29] 2025-11-26 12:10:55,331 | INFO     | corecount: 12
[2025-11-26 04:11:29] 2025-11-26 12:10:55,331 | INFO     | event service: False
[2025-11-26 04:11:29] 2025-11-26 12:10:55,331 | INFO     | sizes: {0: 2284039, 1: 2284238, 2: 2284266, 13: 2284266, 18: 2284584, 23: 2284612, 333: 2310273, 334: 2310277, 336: 2314623, 337: 2314679, 474: 2314873}
[2025-11-26 04:11:29] 2025-11-26 12:10:55,331 | INFO     | --------------------------------------------------
[2025-11-26 04:11:29] 2025-11-26 12:10:55,331 | INFO     | 
[2025-11-26 04:11:29] 2025-11-26 12:10:55,331 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-26 04:11:29] 2025-11-26 12:10:55,551 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 04:11:29] 2025-11-26 12:10:55,551 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 04:11:29] 2025-11-26 12:10:55,551 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 04:11:29] 2025-11-26 12:10:55,551 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 04:11:29] 2025-11-26 12:10:55,551 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 04:11:29] 2025-11-26 12:10:55,551 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 04:11:29] 2025-11-26 12:10:55,551 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 04:11:29] 2025-11-26 12:10:55,551 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 04:11:29] 2025-11-26 12:10:55,551 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 04:11:29] 2025-11-26 12:10:55,551 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 04:11:29] 2025-11-26 12:10:55,551 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 04:11:29] 2025-11-26 12:10:55,551 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 04:11:29] 2025-11-26 12:10:55,551 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 04:11:29] 2025-11-26 12:10:55,551 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 04:11:29] 2025-11-26 12:10:55,551 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 04:11:29] 2025-11-26 12:10:55,551 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 04:11:29] 2025-11-26 12:10:55,552 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 04:11:29] 2025-11-26 12:10:55,552 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 04:11:29] 2025-11-26 12:10:55,552 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 04:11:29] 2025-11-26 12:10:55,552 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 04:11:29] 2025-11-26 12:10:55,552 | INFO     | job 6896989493 has completed (purged errors)
[2025-11-26 04:11:29] 2025-11-26 12:10:55,552 | INFO     | overall cleanup function is called
[2025-11-26 04:11:29] 2025-11-26 12:10:55,925 | INFO     | PID=1004105 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 04:11:29] 2025-11-26 12:10:55,925 | INFO     | .. there are 42 such processes running
[2025-11-26 04:11:29] 2025-11-26 12:10:56,569 | INFO     | --- collectZombieJob: --- 10, [1019612]
[2025-11-26 04:11:29] 2025-11-26 12:10:56,569 | INFO     | zombie collector waiting for pid 1019612
[2025-11-26 04:11:29] 2025-11-26 12:10:56,569 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 04:11:29] 2025-11-26 12:10:56,569 | INFO     | collected zombie processes
[2025-11-26 04:11:29] 2025-11-26 12:10:56,569 | INFO     | will attempt to kill all subprocesses of pid=1019612
[2025-11-26 04:11:29] 2025-11-26 12:10:57,124 | INFO     | process IDs to be killed: [1019612] (in reverse order)
[2025-11-26 04:11:29] 2025-11-26 12:10:57,461 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 04:11:29] 2025-11-26 12:10:57,466 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 04:11:29] 2025-11-26 12:10:57,496 | INFO     | did not find any defunct processes belonging to 1019612
[2025-11-26 04:11:29] 2025-11-26 12:10:57,527 | INFO     | did not find any defunct processes belonging to 1019612
[2025-11-26 04:11:29] 2025-11-26 12:10:57,527 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 04:11:29] 2025-11-26 12:10:57,528 | INFO     | ready for new job
[2025-11-26 04:11:29] 2025-11-26 12:10:57,528 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 04:11:29] 2025-11-26 12:10:57,540 | INFO     | ***************************************
[2025-11-26 04:11:29] 2025-11-26 12:10:57,540 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 04:11:29] 2025-11-26 12:10:57,540 | INFO     | ***************************************
[2025-11-26 04:11:29] 2025-11-26 12:10:57,540 | INFO     | 
[2025-11-26 04:11:29] 2025-11-26 12:10:57,542 | INFO     | architecture information:
[2025-11-26 04:11:29] 2025-11-26 12:10:57,556 | INFO     | executing command: cat /etc/os-release
[2025-11-26 04:11:29] 2025-11-26 12:10:57,637 | INFO     | cat /etc/os-release:
[2025-11-26 04:11:29] NAME="CentOS Linux"
[2025-11-26 04:11:29] VERSION="7 (Core)"
[2025-11-26 04:11:29] ID="centos"
[2025-11-26 04:11:29] ID_LIKE="rhel fedora"
[2025-11-26 04:11:29] VERSION_ID="7"
[2025-11-26 04:11:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 04:11:29] ANSI_COLOR="0;31"
[2025-11-26 04:11:29] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 04:11:29] HOME_URL="https://www.centos.org/"
[2025-11-26 04:11:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 04:11:29] 
[2025-11-26 04:11:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 04:11:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 04:11:29] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 04:11:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 04:11:29] 
[2025-11-26 04:11:29] 2025-11-26 12:10:57,638 | INFO     | ***************************************
[2025-11-26 04:11:29] 2025-11-26 12:10:58,145 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-26 04:11:29] 2025-11-26 12:10:58,242 | INFO     | sufficient remaining disk space (1689638666240 B)
[2025-11-26 04:11:29] 2025-11-26 12:10:58,242 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 04:11:29] 2025-11-26 12:10:58,242 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 04:11:29] 2025-11-26 12:10:58,242 | INFO     | update_server=False
[2025-11-26 04:11:29] 2025-11-26 12:10:58,242 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 04:11:29] 2025-11-26 12:10:58,251 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 04:11:29] 2025-11-26 12:10:58,251 | INFO     | aborting loop
[2025-11-26 04:11:29] 2025-11-26 12:10:58,354 | INFO     | all payload control threads have been joined
[2025-11-26 04:11:29] 2025-11-26 12:10:58,456 | INFO     | all job control threads have been joined
[2025-11-26 04:11:29] 2025-11-26 12:10:58,486 | INFO     | all data control threads have been joined
[2025-11-26 04:11:29] 2025-11-26 12:10:58,635 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 04:11:29] 2025-11-26 12:10:59,190 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 04:11:29] 2025-11-26 12:10:59,248 | INFO     | [job] retrieve thread has finished
[2025-11-26 04:11:29] 2025-11-26 12:10:59,257 | INFO     | [job] job monitor thread has finished
[2025-11-26 04:11:29] 2025-11-26 12:10:59,360 | INFO     | [payload] control thread has finished
[2025-11-26 04:11:29] 2025-11-26 12:10:59,364 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 04:11:29] 2025-11-26 12:10:59,384 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 04:11:29] 2025-11-26 12:10:59,455 | INFO     | [payload] failed_post thread has finished
[2025-11-26 04:11:29] 2025-11-26 12:10:59,462 | INFO     | [job] control thread has finished
[2025-11-26 04:11:29] 2025-11-26 12:10:59,492 | INFO     | [data] control thread has finished
[2025-11-26 04:11:29] 2025-11-26 12:10:59,796 | INFO     | [data] copytool_in thread has finished
[2025-11-26 04:11:29] 2025-11-26 12:10:59,851 | INFO     | [payload] validate_post thread has finished
[2025-11-26 04:11:29] 2025-11-26 12:10:59,968 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 04:11:29] 2025-11-26 12:11:00,037 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 04:11:29] 2025-11-26 12:11:00,060 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 04:11:29] 2025-11-26 12:11:00,063 | INFO     | [job] validate thread has finished
[2025-11-26 04:11:29] 2025-11-26 12:11:00,642 | INFO     | [data] copytool_out thread has finished
[2025-11-26 04:11:29] 2025-11-26 12:11:01,043 | INFO     | [job] queue monitor thread has finished
[2025-11-26 04:11:29] 2025-11-26 12:11:03,198 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 04:11:29] 2025-11-26 12:11:24,139 | INFO     | [monitor] cgroup control has ended
[2025-11-26 04:11:29] 2025-11-26 12:11:24,265 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140034948503360)>', '<ExcThread(monitor, started 140034162280192)>']
[2025-11-26 04:11:29] 2025-11-26 12:11:28,405 | INFO     | PID=1004105 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 04:11:29] 2025-11-26 12:11:28,406 | INFO     | .. there are 42 such processes running
[2025-11-26 04:11:29] 2025-11-26 12:11:28,406 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 04:11:29] 2025-11-26 12:11:28,406 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 04:11:29] 2025-11-26 12:11:28,407 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 04:11:29] 2025-11-26 12:11:28,407 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 04:11:29] 2025-11-26 12:11:28,407 | INFO     | [monitor] control thread has ended
[2025-11-26 04:11:29] 2025-11-26 12:11:29,291 | INFO     | all workflow threads have been joined
[2025-11-26 04:11:29] 2025-11-26 12:11:29,291 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 04:11:29] 2025-11-26 12:11:29,291 | INFO     | traces error code: 0
[2025-11-26 04:11:29] 2025-11-26 12:11:29,292 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 04:11:29] 2025-11-26 12:11:29,454 [wrapper] ==== pilot stdout END ====
[2025-11-26 04:11:29] 2025-11-26 12:11:29,483 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 04:11:29] 2025-11-26 12:11:29,518 [wrapper] pilotpid: 1004105
[2025-11-26 04:11:29] 2025-11-26 12:11:29,536 [wrapper] Pilot exit status: 0
[2025-11-26 04:11:29] 2025-11-26 12:11:29,694 [wrapper] pandaids: 6896989493
[2025-11-26 04:11:29] 2025-11-26 12:11:29,797 [wrapper] cleanup supervisor_pilot 1004134 1004107
[2025-11-26 04:11:29] 2025-11-26 12:11:29,805 [wrapper] Test setup, not cleaning
[2025-11-26 04:11:29] 2025-11-26 12:11:29,809 [wrapper] apfmon messages muted
[2025-11-26 04:11:29] 2025-11-26 12:11:29,811 [wrapper] ==== wrapper stdout END ====
[2025-11-26 04:11:29] 2025-11-26 12:11:29,822 [wrapper] ==== wrapper stderr END ====
[2025-11-26 04:11:29]  *** Error codes and diagnostics ***
[2025-11-26 04:11:29]     "exeErrorCode": 65,
[2025-11-26 04:11:29]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-11-26 04:11:29]     "pilotErrorCode": 1305,
[2025-11-26 04:11:29]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-11-26 04:11:29]  *** Listing of results directory ***
[2025-11-26 04:11:30] total 404592
[2025-11-26 04:11:30] -rw-r--r--. 1 boinc boinc    576529 Nov 25 03:49 pilot3.tar.gz
[2025-11-26 04:11:30] -rwx------. 1 boinc boinc     36292 Nov 25 04:21 runpilot2-wrapper.sh
[2025-11-26 04:11:30] -rw-r--r--. 1 boinc boinc      5112 Nov 25 04:21 queuedata.json
[2025-11-26 04:11:30] -rw-r--r--. 1 boinc boinc       100 Nov 26 04:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 04:11:30] -rwxr-xr-x. 1 boinc boinc      7986 Nov 26 04:01 run_atlas
[2025-11-26 04:11:30] -rw-r--r--. 1 boinc boinc       105 Nov 26 04:01 job.xml
[2025-11-26 04:11:30] -rw-r--r--. 2 boinc boinc 410024334 Nov 26 04:01 EVNT.47483658._002161.pool.root.1
[2025-11-26 04:11:30] -rw-r--r--. 1 boinc boinc      6595 Nov 26 04:01 init_data.xml
[2025-11-26 04:11:30] -rw-r--r--. 2 boinc boinc     15847 Nov 26 04:01 start_atlas.sh
[2025-11-26 04:11:30] drwxrwx--x. 2 boinc boinc      4096 Nov 26 04:01 shared
[2025-11-26 04:11:30] -rw-r--r--. 2 boinc boinc    590100 Nov 26 04:01 input.tar.gz
[2025-11-26 04:11:30] -rw-r--r--. 1 boinc boinc         0 Nov 26 04:01 boinc_lockfile
[2025-11-26 04:11:30] -rw-r--r--. 1 boinc boinc      2784 Nov 26 04:01 pandaJob.out
[2025-11-26 04:11:30] -rw-------. 1 boinc boinc    991830 Nov 26 04:02 agis_schedconf.cvmfs.json
[2025-11-26 04:11:30] -rw-------. 1 boinc boinc   1516240 Nov 26 04:02 agis_ddmendpoints.agis.ALL.json
[2025-11-26 04:11:30] drwx------. 5 boinc boinc      4096 Nov 26 04:02 pilot3
[2025-11-26 04:11:30] -rw-r--r--. 1 boinc boinc       524 Nov 26 04:08 boinc_task_state.xml
[2025-11-26 04:11:30] -rw-------. 1 boinc boinc      1011 Nov 26 04:08 memory_monitor_summary.json
[2025-11-26 04:11:30] -rw-------. 1 boinc boinc     52621 Nov 26 04:08 log.47556161._001447.job.log.tgz.1
[2025-11-26 04:11:30] -rw-------. 1 boinc boinc     10341 Nov 26 04:10 heartbeat.json
[2025-11-26 04:11:30] -rw-------. 1 boinc boinc        95 Nov 26 04:11 pilot_heartbeat.json
[2025-11-26 04:11:30] -rw-r--r--. 1 boinc boinc      8192 Nov 26 04:11 boinc_mmap_file
[2025-11-26 04:11:30] -rw-r--r--. 1 boinc boinc        23 Nov 26 04:11 wrapper_checkpoint.txt
[2025-11-26 04:11:30] -rw-------. 1 boinc boinc      4823 Nov 26 04:11 pilotlog.txt
[2025-11-26 04:11:30] -rw-------. 1 boinc boinc    129265 Nov 26 04:11 log.47556161._001447.job.log.1
[2025-11-26 04:11:30] -rw-------. 1 boinc boinc       186 Nov 26 04:11 output.list
[2025-11-26 04:11:30] -rw-r--r--. 1 boinc boinc       620 Nov 26 04:11 runtime_log
[2025-11-26 04:11:30] -rw-------. 1 boinc boinc    204800 Nov 26 04:11 result.tar.gz
[2025-11-26 04:11:30] -rw-r--r--. 1 boinc boinc      8636 Nov 26 04:11 runtime_log.err
[2025-11-26 04:11:30] -rw-------. 1 boinc boinc       647 Nov 26 04:11 NDKNDmSE7h8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmZNMKDmGOHnfm.diag
[2025-11-26 04:11:30] -rw-r--r--. 1 boinc boinc     22684 Nov 26 04:11 stderr.txt
[2025-11-26 04:11:30] No HITS result produced
[2025-11-26 04:11:30]  *** Contents of shared directory: ***
[2025-11-26 04:11:30] total 401216
[2025-11-26 04:11:30] -rw-r--r--. 2 boinc boinc 410024334 Nov 26 04:01 ATLAS.root_0
[2025-11-26 04:11:30] -rw-r--r--. 2 boinc boinc     15847 Nov 26 04:01 start_atlas.sh
[2025-11-26 04:11:30] -rw-r--r--. 2 boinc boinc    590100 Nov 26 04:01 input.tar.gz
[2025-11-26 04:11:30] -rw-------. 1 boinc boinc    204800 Nov 26 04:11 result.tar.gz
04:11:31 (994504): run_atlas exited; CPU time 56.123992
04:11:31 (994504): called boinc_finish(0)

</stderr_txt>
]]>

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