Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
07:53:07 (2380): wrapper (7.7.26015): starting
07:53:07 (2380): wrapper: running run_atlas (--nthreads 12)
[2025-11-26 07:53:07] Arguments: --nthreads 12
[2025-11-26 07:53:07] Threads: 12
[2025-11-26 07:53:07] Checking for CVMFS
[2025-11-26 07:53:07] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 07:53:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 07:53:07] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 07:53:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 07:53:08] 2.11.2.0 30551 117648 92176 153322 2 81 18434907 20275200 1 130560 0 52256577 99.917 6398926 28976 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-26 07:53:08] CVMFS is ok
[2025-11-26 07:53:08] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 07:53:08] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 07:53:08] Further information can be found at the LHC@home message board.
[2025-11-26 07:53:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 07:53:08] Checking for apptainer binary...
[2025-11-26 07:53:08] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 07:53:08] Running /usr/bin/apptainer --version
[2025-11-26 07:53:08] apptainer version 1.3.2-1.el7
[2025-11-26 07:53:08] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 07:53:09] c-205-16.aglt2.org
[2025-11-26 07:53:09] apptainer works
[2025-11-26 07:53:09] Set ATHENA_PROC_NUMBER=12
[2025-11-26 07:53:09] Set ATHENA_CORE_NUMBER=12
[2025-11-26 07:53:09] Starting ATLAS job with PandaID=6896450437
[2025-11-26 07:53:09] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 15:00:32]  *** The last 200 lines of the pilot log: ***
[2025-11-26 15:00:32] 2025-11-26 19:59:58,577 | INFO     | time since job start (25594s) is within the limit (172800.0s)
[2025-11-26 15:00:32] 2025-11-26 19:59:58,589 | INFO     | monitor loop #1919: job 0:6896450437 is in state 'finished'
[2025-11-26 15:00:32] 2025-11-26 19:59:58,589 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 15:00:32] 2025-11-26 20:00:00,193 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-26 15:00:32] 2025-11-26 20:00:00,197 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1695.8333333333333
[2025-11-26 15:00:32] 2025-11-26 20:00:00,199 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6896450437/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 15:00:32] 2025-11-26 20:00:00,201 | INFO     | extracted standard info from prmon json
[2025-11-26 15:00:32] 2025-11-26 20:00:00,201 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 15:00:32] 2025-11-26 20:00:00,201 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 15:00:32] 2025-11-26 20:00:00,208 | INFO     | fitting pss+swap vs Time
[2025-11-26 15:00:32] 2025-11-26 20:00:00,209 | INFO     | sum of square deviations: 22809628432.968906
[2025-11-26 15:00:32] 2025-11-26 20:00:00,212 | INFO     | sum of deviations: 370018040057.1693
[2025-11-26 15:00:32] 2025-11-26 20:00:00,213 | INFO     | mean x: 1764174383.169451
[2025-11-26 15:00:32] 2025-11-26 20:00:00,213 | INFO     | mean y: 3419824.9976133653
[2025-11-26 15:00:32] 2025-11-26 20:00:00,213 | INFO     | intersect: -28615036170.36208
[2025-11-26 15:00:32] 2025-11-26 20:00:00,213 | INFO     | chi2: 5.232541382559872
[2025-11-26 15:00:32] 2025-11-26 20:00:00,214 | INFO     | sum of square deviations: 22002779145.32364
[2025-11-26 15:00:32] 2025-11-26 20:00:00,218 | INFO     | sum of deviations: 512160357778.493
[2025-11-26 15:00:32] 2025-11-26 20:00:00,218 | INFO     | mean x: 1764174230.6714976
[2025-11-26 15:00:32] 2025-11-26 20:00:00,218 | INFO     | mean y: 3446661.2536231885
[2025-11-26 15:00:32] 2025-11-26 20:00:00,218 | INFO     | intersect: -41061370614.62881
[2025-11-26 15:00:32] 2025-11-26 20:00:00,218 | INFO     | chi2: 2.8127092748960325
[2025-11-26 15:00:32] 2025-11-26 20:00:00,218 | INFO     | current chi2=2.8127092748960325 (change=46.24582837947868 %)
[2025-11-26 15:00:32] 2025-11-26 20:00:00,219 | INFO     | sum of square deviations: 21215186032.6748
[2025-11-26 15:00:32] 2025-11-26 20:00:00,223 | INFO     | sum of deviations: 562296360696.3376
[2025-11-26 15:00:32] 2025-11-26 20:00:00,223 | INFO     | mean x: 1764174078.1735942
[2025-11-26 15:00:32] 2025-11-26 20:00:00,223 | INFO     | mean y: 3456323.586797066
[2025-11-26 15:00:32] 2025-11-26 20:00:00,223 | INFO     | intersect: -46754967678.16393
[2025-11-26 15:00:32] 2025-11-26 20:00:00,223 | INFO     | chi2: 2.2760606387996845
[2025-11-26 15:00:32] 2025-11-26 20:00:00,224 | INFO     | current chi2=2.2760606387996845 (change=19.079420716745936 %)
[2025-11-26 15:00:32] 2025-11-26 20:00:00,224 | INFO     | right removable region: 408
[2025-11-26 15:00:32] 2025-11-26 20:00:00,224 | INFO     | sum of square deviations: 22002735835.32363
[2025-11-26 15:00:32] 2025-11-26 20:00:00,228 | INFO     | sum of deviations: 242554463190.4008
[2025-11-26 15:00:32] 2025-11-26 20:00:00,228 | INFO     | mean x: 1764174535.6714976
[2025-11-26 15:00:32] 2025-11-26 20:00:00,228 | INFO     | mean y: 3443827.966183575
[2025-11-26 15:00:32] 2025-11-26 20:00:00,228 | INFO     | intersect: -19444519856.031784
[2025-11-26 15:00:32] 2025-11-26 20:00:00,229 | INFO     | chi2: 3.1036325827937192
[2025-11-26 15:00:32] 2025-11-26 20:00:00,229 | INFO     | current chi2=3.1036325827937192 (change=40.68594291221152 %)
[2025-11-26 15:00:32] 2025-11-26 20:00:00,229 | INFO     | sum of square deviations: 21215150163.359455
[2025-11-26 15:00:32] 2025-11-26 20:00:00,233 | INFO     | sum of deviations: 209492319465.7263
[2025-11-26 15:00:32] 2025-11-26 20:00:00,233 | INFO     | mean x: 1764174688.1687043
[2025-11-26 15:00:32] 2025-11-26 20:00:00,233 | INFO     | mean y: 3450223.728606357
[2025-11-26 15:00:32] 2025-11-26 20:00:00,233 | INFO     | intersect: -17417168745.327156
[2025-11-26 15:00:32] 2025-11-26 20:00:00,234 | INFO     | chi2: 3.046270304798985
[2025-11-26 15:00:32] 2025-11-26 20:00:00,234 | INFO     | current chi2=3.046270304798985 (change=1.8482303064075931 %)
[2025-11-26 15:00:32] 2025-11-26 20:00:00,234 | INFO     | left removable region: 20
[2025-11-26 15:00:32] 2025-11-26 20:00:00,235 | INFO     | sum of square deviations: 18112225281.082394
[2025-11-26 15:00:32] 2025-11-26 20:00:00,238 | INFO     | sum of deviations: 360145324851.8041
[2025-11-26 15:00:32] 2025-11-26 20:00:00,238 | INFO     | mean x: 1764174657.6752577
[2025-11-26 15:00:32] 2025-11-26 20:00:00,238 | INFO     | mean y: 3496124.9587628865
[2025-11-26 15:00:32] 2025-11-26 20:00:00,238 | INFO     | intersect: -35075531731.84397
[2025-11-26 15:00:32] 2025-11-26 20:00:00,239 | INFO     | chi2: 0.057338640554799
[2025-11-26 15:00:32] 2025-11-26 20:00:00,239 | INFO     | current memory leak: 19.88 B/s (using 388 data points, chi2=0.06)
[2025-11-26 15:00:32] 2025-11-26 20:00:00,239 | INFO     | could have reported an average CPU frequency of 2368 MHz (18 samples)
[2025-11-26 15:00:32] 2025-11-26 20:00:00,239 | INFO     | ..............................
[2025-11-26 15:00:32] 2025-11-26 20:00:00,240 | INFO     | . Timing measurements:
[2025-11-26 15:00:32] 2025-11-26 20:00:00,240 | INFO     | . get job = 0 s
[2025-11-26 15:00:32] 2025-11-26 20:00:00,240 | INFO     | . initial setup = 2 s
[2025-11-26 15:00:32] 2025-11-26 20:00:00,240 | INFO     | . payload setup = 7 s
[2025-11-26 15:00:32] 2025-11-26 20:00:00,240 | INFO     | . stage-in = 0 s
[2025-11-26 15:00:32] 2025-11-26 20:00:00,240 | INFO     | . payload execution = 25559 s
[2025-11-26 15:00:32] 2025-11-26 20:00:00,240 | INFO     | . stage-out = 3 s
[2025-11-26 15:00:32] 2025-11-26 20:00:00,240 | INFO     | . log creation = 0 s
[2025-11-26 15:00:32] 2025-11-26 20:00:00,240 | INFO     | ..............................
[2025-11-26 15:00:32] 2025-11-26 20:00:00,320 | INFO     | 
[2025-11-26 15:00:32] 2025-11-26 20:00:00,320 | INFO     | job summary report
[2025-11-26 15:00:32] 2025-11-26 20:00:00,321 | INFO     | --------------------------------------------------
[2025-11-26 15:00:32] 2025-11-26 20:00:00,321 | INFO     | PanDA job id: 6896450437
[2025-11-26 15:00:32] 2025-11-26 20:00:00,321 | INFO     | task id: 47556149
[2025-11-26 15:00:32] 2025-11-26 20:00:00,321 | INFO     | errors: (none)
[2025-11-26 15:00:32] 2025-11-26 20:00:00,321 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 15:00:32] 2025-11-26 20:00:00,321 | INFO     | pilot state: finished 
[2025-11-26 15:00:32] 2025-11-26 20:00:00,322 | INFO     | transexitcode: 0
[2025-11-26 15:00:32] 2025-11-26 20:00:00,322 | INFO     | exeerrorcode: 0
[2025-11-26 15:00:32] 2025-11-26 20:00:00,322 | INFO     | exeerrordiag: 
[2025-11-26 15:00:32] 2025-11-26 20:00:00,322 | INFO     | exitcode: 0
[2025-11-26 15:00:32] 2025-11-26 20:00:00,322 | INFO     | exitmsg: OK
[2025-11-26 15:00:32] 2025-11-26 20:00:00,322 | INFO     | cpuconsumptiontime: 292461 s
[2025-11-26 15:00:32] 2025-11-26 20:00:00,322 | INFO     | nevents: 1000
[2025-11-26 15:00:32] 2025-11-26 20:00:00,323 | INFO     | neventsw: 0
[2025-11-26 15:00:32] 2025-11-26 20:00:00,323 | INFO     | pid: 13221
[2025-11-26 15:00:32] 2025-11-26 20:00:00,323 | INFO     | pgrp: 13221
[2025-11-26 15:00:32] 2025-11-26 20:00:00,323 | INFO     | corecount: 12
[2025-11-26 15:00:32] 2025-11-26 20:00:00,323 | INFO     | event service: False
[2025-11-26 15:00:32] 2025-11-26 20:00:00,323 | INFO     | sizes: {0: 2284144, 1: 2284343, 5: 2284605, 11: 2284661, 25571: 2321842, 25574: 2331020, 25579: 2331210}
[2025-11-26 15:00:32] 2025-11-26 20:00:00,323 | INFO     | --------------------------------------------------
[2025-11-26 15:00:32] 2025-11-26 20:00:00,324 | INFO     | 
[2025-11-26 15:00:32] 2025-11-26 20:00:00,324 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-26 15:00:32] 2025-11-26 20:00:00,349 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 15:00:32] 2025-11-26 20:00:00,349 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 15:00:32] 2025-11-26 20:00:00,350 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 15:00:32] 2025-11-26 20:00:00,350 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 15:00:32] 2025-11-26 20:00:00,350 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 15:00:32] 2025-11-26 20:00:00,350 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 15:00:32] 2025-11-26 20:00:00,350 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 15:00:32] 2025-11-26 20:00:00,350 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 15:00:32] 2025-11-26 20:00:00,350 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 15:00:32] 2025-11-26 20:00:00,351 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 15:00:32] 2025-11-26 20:00:00,351 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 15:00:32] 2025-11-26 20:00:00,351 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 15:00:32] 2025-11-26 20:00:00,351 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 15:00:32] 2025-11-26 20:00:00,351 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 15:00:32] 2025-11-26 20:00:00,351 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 15:00:32] 2025-11-26 20:00:00,352 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 15:00:32] 2025-11-26 20:00:00,352 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 15:00:32] 2025-11-26 20:00:00,352 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 15:00:32] 2025-11-26 20:00:00,352 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 15:00:32] 2025-11-26 20:00:00,352 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 15:00:32] 2025-11-26 20:00:00,352 | INFO     | job 6896450437 has completed (purged errors)
[2025-11-26 15:00:32] 2025-11-26 20:00:00,353 | INFO     | overall cleanup function is called
[2025-11-26 15:00:32] 2025-11-26 20:00:01,369 | INFO     | --- collectZombieJob: --- 10, [13221]
[2025-11-26 15:00:32] 2025-11-26 20:00:01,369 | INFO     | zombie collector waiting for pid 13221
[2025-11-26 15:00:32] 2025-11-26 20:00:01,381 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 15:00:32] 2025-11-26 20:00:01,382 | INFO     | collected zombie processes
[2025-11-26 15:00:32] 2025-11-26 20:00:01,382 | INFO     | will attempt to kill all subprocesses of pid=13221
[2025-11-26 15:00:32] 2025-11-26 20:00:01,478 | INFO     | process IDs to be killed: [13221] (in reverse order)
[2025-11-26 15:00:32] 2025-11-26 20:00:01,554 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 15:00:32] 2025-11-26 20:00:01,554 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 15:00:32] 2025-11-26 20:00:01,557 | INFO     | did not find any defunct processes belonging to 13221
[2025-11-26 15:00:32] 2025-11-26 20:00:01,560 | INFO     | did not find any defunct processes belonging to 13221
[2025-11-26 15:00:32] 2025-11-26 20:00:01,562 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 15:00:32] 2025-11-26 20:00:01,563 | INFO     | ready for new job
[2025-11-26 15:00:32] 2025-11-26 20:00:01,563 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 15:00:32] 2025-11-26 20:00:01,565 | INFO     | ***************************************
[2025-11-26 15:00:32] 2025-11-26 20:00:01,565 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 15:00:32] 2025-11-26 20:00:01,566 | INFO     | ***************************************
[2025-11-26 15:00:32] 2025-11-26 20:00:01,566 | INFO     | 
[2025-11-26 15:00:32] 2025-11-26 20:00:01,566 | INFO     | architecture information:
[2025-11-26 15:00:32] 2025-11-26 20:00:01,567 | INFO     | executing command: cat /etc/os-release
[2025-11-26 15:00:32] 2025-11-26 20:00:01,582 | INFO     | cat /etc/os-release:
[2025-11-26 15:00:32] NAME="CentOS Linux"
[2025-11-26 15:00:32] VERSION="7 (Core)"
[2025-11-26 15:00:32] ID="centos"
[2025-11-26 15:00:32] ID_LIKE="rhel fedora"
[2025-11-26 15:00:32] VERSION_ID="7"
[2025-11-26 15:00:32] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 15:00:32] ANSI_COLOR="0;31"
[2025-11-26 15:00:32] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 15:00:32] HOME_URL="https://www.centos.org/"
[2025-11-26 15:00:32] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 15:00:32] 
[2025-11-26 15:00:32] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 15:00:32] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 15:00:32] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 15:00:32] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 15:00:32] 
[2025-11-26 15:00:32] 2025-11-26 20:00:01,582 | INFO     | ***************************************
[2025-11-26 15:00:32] 2025-11-26 20:00:02,086 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-26 15:00:32] 2025-11-26 20:00:02,104 | INFO     | sufficient remaining disk space (28381806592 B)
[2025-11-26 15:00:32] 2025-11-26 20:00:02,104 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 15:00:32] 2025-11-26 20:00:02,104 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 15:00:32] 2025-11-26 20:00:02,105 | INFO     | update_server=False
[2025-11-26 15:00:32] 2025-11-26 20:00:02,105 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 15:00:32] 2025-11-26 20:00:02,105 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 15:00:32] 2025-11-26 20:00:02,105 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 15:00:32] 2025-11-26 20:00:02,106 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 15:00:32] 2025-11-26 20:00:02,106 | INFO     | aborting loop
[2025-11-26 15:00:32] 2025-11-26 20:00:02,782 | INFO     | all data control threads have been joined
[2025-11-26 15:00:32] 2025-11-26 20:00:03,047 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 15:00:32] 2025-11-26 20:00:03,110 | INFO     | [job] retrieve thread has finished
[2025-11-26 15:00:32] 2025-11-26 20:00:03,111 | INFO     | [job] queue monitor thread has finished
[2025-11-26 15:00:32] 2025-11-26 20:00:03,112 | INFO     | [job] job monitor thread has finished
[2025-11-26 15:00:32] 2025-11-26 20:00:03,221 | INFO     | [job] validate thread has finished
[2025-11-26 15:00:32] 2025-11-26 20:00:03,323 | INFO     | all payload control threads have been joined
[2025-11-26 15:00:32] 2025-11-26 20:00:03,357 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 15:00:32] 2025-11-26 20:00:03,783 | INFO     | [data] control thread has finished
[2025-11-26 15:00:32] 2025-11-26 20:00:03,785 | INFO     | [payload] validate_post thread has finished
[2025-11-26 15:00:32] 2025-11-26 20:00:03,789 | INFO     | all job control threads have been joined
[2025-11-26 15:00:32] 2025-11-26 20:00:04,046 | INFO     | [payload] failed_post thread has finished
[2025-11-26 15:00:32] 2025-11-26 20:00:04,244 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 15:00:32] 2025-11-26 20:00:04,328 | INFO     | [payload] control thread has finished
[2025-11-26 15:00:32] 2025-11-26 20:00:04,422 | INFO     | [data] copytool_in thread has finished
[2025-11-26 15:00:32] 2025-11-26 20:00:04,508 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 15:00:32] 2025-11-26 20:00:04,794 | INFO     | [job] control thread has finished
[2025-11-26 15:00:32] 2025-11-26 20:00:05,052 | INFO     | [data] copytool_out thread has finished
[2025-11-26 15:00:32] 2025-11-26 20:00:05,899 | INFO     | [monitor] cgroup control has ended
[2025-11-26 15:00:32] 2025-11-26 20:00:06,111 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 15:00:32] 2025-11-26 20:00:13,054 | INFO     | job.realtimelogging is not enabled
[2025-11-26 15:00:32] 2025-11-26 20:00:14,060 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 15:00:32] 2025-11-26 20:00:14,404 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140274777196352)>', '<ExcThread(monitor, started 140273824818944)>']
[2025-11-26 15:00:32] 2025-11-26 20:00:19,429 | INFO     | all workflow threads have been joined
[2025-11-26 15:00:32] 2025-11-26 20:00:19,429 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 15:00:32] 2025-11-26 20:00:19,430 | INFO     | traces error code: 0
[2025-11-26 15:00:32] 2025-11-26 20:00:19,430 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 15:00:32] 2025-11-26 20:00:31,779 | INFO     | PID=6148 has CPU usage=3.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-26 15:00:32] 2025-11-26 20:00:31,779 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 15:00:32] 2025-11-26 20:00:31,779 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 15:00:32] 2025-11-26 20:00:31,779 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 15:00:32] 2025-11-26 20:00:31,779 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 15:00:32] 2025-11-26 20:00:31,780 | INFO     | [monitor] control thread has ended
[2025-11-26 15:00:32] 2025-11-26 20:00:31,870 [wrapper] ==== pilot stdout END ====
[2025-11-26 15:00:32] 2025-11-26 20:00:31,874 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 15:00:32] 2025-11-26 20:00:31,878 [wrapper] pilotpid: 6148
[2025-11-26 15:00:32] 2025-11-26 20:00:31,882 [wrapper] Pilot exit status: 0
[2025-11-26 15:00:32] 2025-11-26 20:00:31,897 [wrapper] pandaids: 6896450437
[2025-11-26 15:00:32] 2025-11-26 20:00:31,935 [wrapper] cleanup supervisor_pilot 12137 6149
[2025-11-26 15:00:32] 2025-11-26 20:00:31,939 [wrapper] Test setup, not cleaning
[2025-11-26 15:00:32] 2025-11-26 20:00:31,943 [wrapper] apfmon messages muted
[2025-11-26 15:00:32] 2025-11-26 20:00:31,947 [wrapper] ==== wrapper stdout END ====
[2025-11-26 15:00:32] 2025-11-26 20:00:31,951 [wrapper] ==== wrapper stderr END ====
[2025-11-26 15:00:32]  *** Error codes and diagnostics ***
[2025-11-26 15:00:32]     "exeErrorCode": 0,
[2025-11-26 15:00:32]     "exeErrorDiag": "",
[2025-11-26 15:00:32]     "pilotErrorCode": 0,
[2025-11-26 15:00:32]     "pilotErrorDiag": "",
[2025-11-26 15:00:32]  *** Listing of results directory ***
[2025-11-26 15:00:32] total 1316560
[2025-11-26 15:00:32] -rw-r--r-- 1 boincer umatlas    576529 Nov 24 22:04 pilot3.tar.gz
[2025-11-26 15:00:32] -rwx------ 1 boincer umatlas     36292 Nov 24 22:46 runpilot2-wrapper.sh
[2025-11-26 15:00:32] -rw-r--r-- 1 boincer umatlas      5112 Nov 24 22:46 queuedata.json
[2025-11-26 15:00:32] -rw-r--r-- 1 boincer umatlas       100 Nov 26 07:53 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 15:00:32] -rwxr-xr-x 1 boincer umatlas      7986 Nov 26 07:53 run_atlas
[2025-11-26 15:00:32] -rw-r--r-- 1 boincer umatlas       105 Nov 26 07:53 job.xml
[2025-11-26 15:00:32] -rw-r--r-- 2 boincer umatlas 410597962 Nov 26 07:53 EVNT.47483658._001498.pool.root.1
[2025-11-26 15:00:32] -rw-r--r-- 2 boincer umatlas     15847 Nov 26 07:53 start_atlas.sh
[2025-11-26 15:00:32] drwxrwx--x 2 boincer umatlas      4096 Nov 26 07:53 shared
[2025-11-26 15:00:32] -rw-r--r-- 2 boincer umatlas    590100 Nov 26 07:53 input.tar.gz
[2025-11-26 15:00:32] -rw-r--r-- 1 boincer umatlas         0 Nov 26 07:53 boinc_lockfile
[2025-11-26 15:00:32] -rw-r--r-- 1 boincer umatlas      2786 Nov 26 07:53 pandaJob.out
[2025-11-26 15:00:32] -rw------- 1 boincer umatlas        57 Nov 26 07:53 setup.sh.local
[2025-11-26 15:00:32] -rw------- 1 boincer umatlas    991830 Nov 26 07:53 agis_schedconf.cvmfs.json
[2025-11-26 15:00:32] drwx------ 5 boincer umatlas      4096 Nov 26 07:53 pilot3
[2025-11-26 15:00:32] -rw-r--r-- 1 boincer umatlas       532 Nov 26 14:49 boinc_task_state.xml
[2025-11-26 15:00:32] -rw-r--r-- 1 boincer umatlas      5956 Nov 26 14:58 init_data.xml
[2025-11-26 15:00:32] -rw------- 1 boincer umatlas 922149066 Nov 26 14:59 HITS.47556149._004845.pool.root.1
[2025-11-26 15:00:32] -rw------- 1 boincer umatlas        95 Nov 26 14:59 pilot_heartbeat.json
[2025-11-26 15:00:32] -rw------- 1 boincer umatlas      1064 Nov 26 14:59 memory_monitor_summary.json
[2025-11-26 15:00:32] -rw------- 1 boincer umatlas   1516240 Nov 26 14:59 agis_ddmendpoints.agis.ALL.json
[2025-11-26 15:00:32] -rw------- 1 boincer umatlas   2165076 Nov 26 14:59 log.47556149._004845.job.log.tgz.1
[2025-11-26 15:00:32] -rw------- 1 boincer umatlas      8678 Nov 26 15:00 heartbeat.json
[2025-11-26 15:00:32] -rw-r--r-- 1 boincer umatlas      8192 Nov 26 15:00 boinc_mmap_file
[2025-11-26 15:00:32] -rw-r--r-- 1 boincer umatlas        29 Nov 26 15:00 wrapper_checkpoint.txt
[2025-11-26 15:00:32] -rw------- 1 boincer umatlas       744 Nov 26 15:00 pilotlog.txt
[2025-11-26 15:00:32] -rw------- 1 boincer umatlas   3582560 Nov 26 15:00 log.47556149._004845.job.log.1
[2025-11-26 15:00:32] -rw------- 1 boincer umatlas       353 Nov 26 15:00 output.list
[2025-11-26 15:00:32] -rw-r--r-- 1 boincer umatlas       620 Nov 26 15:00 runtime_log
[2025-11-26 15:00:32] -rw------- 1 boincer umatlas   5765120 Nov 26 15:00 result.tar.gz
[2025-11-26 15:00:32] -rw-r--r-- 1 boincer umatlas      9345 Nov 26 15:00 runtime_log.err
[2025-11-26 15:00:32] -rw------- 1 boincer umatlas       670 Nov 26 15:00 CGPNDmXBzh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmr5LKDmHXc8pn.diag
[2025-11-26 15:00:32] -rw-r--r-- 1 boincer umatlas     21284 Nov 26 15:00 stderr.txt
[2025-11-26 15:00:32] HITS file was successfully produced:
[2025-11-26 15:00:32] -rw------- 1 boincer umatlas 922149066 Nov 26 14:59 shared/HITS.pool.root.1
[2025-11-26 15:00:32]  *** Contents of shared directory: ***
[2025-11-26 15:00:32] total 1307748
[2025-11-26 15:00:32] -rw-r--r-- 2 boincer umatlas 410597962 Nov 26 07:53 ATLAS.root_0
[2025-11-26 15:00:32] -rw-r--r-- 2 boincer umatlas     15847 Nov 26 07:53 start_atlas.sh
[2025-11-26 15:00:32] -rw-r--r-- 2 boincer umatlas    590100 Nov 26 07:53 input.tar.gz
[2025-11-26 15:00:32] -rw------- 1 boincer umatlas 922149066 Nov 26 14:59 HITS.pool.root.1
[2025-11-26 15:00:32] -rw------- 1 boincer umatlas   5765120 Nov 26 15:00 result.tar.gz
15:00:34 (2380): run_atlas exited; CPU time 285752.023965
15:00:34 (2380): called boinc_finish(0)

</stderr_txt>
]]>

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