Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
07:19:44 (12497): wrapper (7.7.26015): starting
07:19:44 (12497): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 07:19:44] Arguments: --nthreads 8
[2025-11-26 07:19:44] Threads: 8
[2025-11-26 07:19:44] Checking for CVMFS
[2025-11-26 07:19:44] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 07:19:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 07:19:44] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 07:19:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 07:19:45] 2.11.2.0 2919 54460 81476 153322 0 55 18354185 20275200 1 130560 0 11296356 99.782 3204111 28820 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-26 07:19:45] CVMFS is ok
[2025-11-26 07:19:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 07:19:45] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 07:19:45] Further information can be found at the LHC@home message board.
[2025-11-26 07:19:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 07:19:45] Checking for apptainer binary...
[2025-11-26 07:19:45] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 07:19:45] Running /usr/bin/apptainer --version
[2025-11-26 07:19:45] apptainer version 1.3.2-1.el7
[2025-11-26 07:19:45] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 07:19:46] c-204-17.aglt2.org
[2025-11-26 07:19:46] apptainer works
[2025-11-26 07:19:46] Set ATHENA_PROC_NUMBER=8
[2025-11-26 07:19:46] Set ATHENA_CORE_NUMBER=8
[2025-11-26 07:19:46] Starting ATLAS job with PandaID=6895559441
[2025-11-26 07:19:46] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 19:53:25]  *** The last 200 lines of the pilot log: ***
[2025-11-26 19:53:25] 2025-11-27 00:52:38,384 | INFO     | time since job start (45154s) is within the limit (172800.0s)
[2025-11-26 19:53:25] 2025-11-27 00:52:38,659 | INFO     | monitor loop #3306: job 0:6895559441 is in state 'finished'
[2025-11-26 19:53:25] 2025-11-27 00:52:38,659 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 19:53:25] 2025-11-27 00:52:39,504 | INFO     | PID=16180 has CPU usage=13.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-26 19:53:25] 2025-11-27 00:52:40,124 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-26 19:53:25] 2025-11-27 00:52:40,128 | INFO     | found 8 cores (4 cores per socket, 2 sockets) , CPU MHz: 1695.875
[2025-11-26 19:53:25] 2025-11-27 00:52:40,130 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6895559441/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 19:53:25] 2025-11-27 00:52:40,131 | INFO     | extracted standard info from prmon json
[2025-11-26 19:53:25] 2025-11-27 00:52:40,131 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 19:53:25] 2025-11-27 00:52:40,131 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 19:53:25] 2025-11-27 00:52:40,145 | INFO     | fitting pss+swap vs Time
[2025-11-26 19:53:25] 2025-11-27 00:52:40,146 | INFO     | sum of square deviations: 125653094616.72835
[2025-11-26 19:53:25] 2025-11-27 00:52:40,157 | INFO     | sum of deviations: 782241979985.7318
[2025-11-26 19:53:25] 2025-11-27 00:52:40,157 | INFO     | mean x: 1764182177.0554054
[2025-11-26 19:53:25] 2025-11-27 00:52:40,157 | INFO     | mean y: 3065000.07972973
[2025-11-26 19:53:25] 2025-11-27 00:52:40,158 | INFO     | intersect: -10979691639.8959
[2025-11-26 19:53:25] 2025-11-27 00:52:40,158 | INFO     | chi2: 5.689765150464101
[2025-11-26 19:53:25] 2025-11-27 00:52:40,159 | INFO     | sum of square deviations: 123123367885.1756
[2025-11-26 19:53:25] 2025-11-27 00:52:40,170 | INFO     | sum of deviations: 1022348039056.7612
[2025-11-26 19:53:25] 2025-11-27 00:52:40,170 | INFO     | mean x: 1764182024.5591836
[2025-11-26 19:53:25] 2025-11-27 00:52:40,171 | INFO     | mean y: 3079461.3387755104
[2025-11-26 19:53:25] 2025-11-27 00:52:40,171 | INFO     | intersect: -14645707883.637901
[2025-11-26 19:53:25] 2025-11-27 00:52:40,171 | INFO     | chi2: 2.9808157181139663
[2025-11-26 19:53:25] 2025-11-27 00:52:40,172 | INFO     | current chi2=2.9808157181139663 (change=47.61091821389451 %)
[2025-11-26 19:53:25] 2025-11-27 00:52:40,172 | INFO     | sum of square deviations: 120627827841.10141
[2025-11-26 19:53:25] 2025-11-27 00:52:40,183 | INFO     | sum of deviations: 1084817321007.2168
[2025-11-26 19:53:25] 2025-11-27 00:52:40,183 | INFO     | mean x: 1764181872.0630138
[2025-11-26 19:53:25] 2025-11-27 00:52:40,184 | INFO     | mean y: 3083267.2561643836
[2025-11-26 19:53:25] 2025-11-27 00:52:40,184 | INFO     | intersect: -15862369062.217043
[2025-11-26 19:53:25] 2025-11-27 00:52:40,185 | INFO     | chi2: 2.6370169005185455
[2025-11-26 19:53:25] 2025-11-27 00:52:40,185 | INFO     | current chi2=2.6370169005185455 (change=11.53371593910376 %)
[2025-11-26 19:53:25] 2025-11-27 00:52:40,185 | INFO     | right removable region: 729
[2025-11-26 19:53:25] 2025-11-27 00:52:40,186 | INFO     | sum of square deviations: 123123117175.17563
[2025-11-26 19:53:25] 2025-11-27 00:52:40,197 | INFO     | sum of deviations: 556346116724.2827
[2025-11-26 19:53:25] 2025-11-27 00:52:40,197 | INFO     | mean x: 1764182329.5591836
[2025-11-26 19:53:25] 2025-11-27 00:52:40,197 | INFO     | mean y: 3078594.269387755
[2025-11-26 19:53:25] 2025-11-27 00:52:40,197 | INFO     | intersect: -7968584329.496662
[2025-11-26 19:53:25] 2025-11-27 00:52:40,198 | INFO     | chi2: 3.2041732043969184
[2025-11-26 19:53:25] 2025-11-27 00:52:40,198 | INFO     | current chi2=3.2041732043969184 (change=43.68531706206606 %)
[2025-11-26 19:53:25] 2025-11-27 00:52:40,199 | INFO     | sum of square deviations: 120627415969.3479
[2025-11-26 19:53:25] 2025-11-27 00:52:40,210 | INFO     | sum of deviations: 507112652185.7009
[2025-11-26 19:53:25] 2025-11-27 00:52:40,210 | INFO     | mean x: 1764182482.060274
[2025-11-26 19:53:25] 2025-11-27 00:52:40,210 | INFO     | mean y: 3081601.393150685
[2025-11-26 19:53:25] 2025-11-27 00:52:40,210 | INFO     | intersect: -7413468361.382071
[2025-11-26 19:53:25] 2025-11-27 00:52:40,211 | INFO     | chi2: 3.1458851577360685
[2025-11-26 19:53:25] 2025-11-27 00:52:40,211 | INFO     | current chi2=3.1458851577360685 (change=1.8191290839354235 %)
[2025-11-26 19:53:25] 2025-11-27 00:52:40,211 | INFO     | left removable region: 20
[2025-11-26 19:53:25] 2025-11-27 00:52:40,212 | INFO     | sum of square deviations: 110513979431.9319
[2025-11-26 19:53:25] 2025-11-27 00:52:40,222 | INFO     | sum of deviations: 753283486583.3398
[2025-11-26 19:53:25] 2025-11-27 00:52:40,222 | INFO     | mean x: 1764182451.568406
[2025-11-26 19:53:25] 2025-11-27 00:52:40,223 | INFO     | mean y: 3103606.2919605076
[2025-11-26 19:53:25] 2025-11-27 00:52:40,223 | INFO     | intersect: -12021886489.238092
[2025-11-26 19:53:25] 2025-11-27 00:52:40,223 | INFO     | chi2: 0.05484957379421943
[2025-11-26 19:53:25] 2025-11-27 00:52:40,224 | INFO     | current memory leak: 6.82 B/s (using 709 data points, chi2=0.05)
[2025-11-26 19:53:25] 2025-11-27 00:52:40,224 | INFO     | could have reported an average CPU frequency of 2179 MHz (28 samples)
[2025-11-26 19:53:25] 2025-11-27 00:52:40,224 | INFO     | ..............................
[2025-11-26 19:53:25] 2025-11-27 00:52:40,224 | INFO     | . Timing measurements:
[2025-11-26 19:53:25] 2025-11-27 00:52:40,225 | INFO     | . get job = 0 s
[2025-11-26 19:53:25] 2025-11-27 00:52:40,225 | INFO     | . initial setup = 2 s
[2025-11-26 19:53:25] 2025-11-27 00:52:40,225 | INFO     | . payload setup = 9 s
[2025-11-26 19:53:25] 2025-11-27 00:52:40,225 | INFO     | . stage-in = 0 s
[2025-11-26 19:53:25] 2025-11-27 00:52:40,225 | INFO     | . payload execution = 45112 s
[2025-11-26 19:53:25] 2025-11-27 00:52:40,225 | INFO     | . stage-out = 3 s
[2025-11-26 19:53:25] 2025-11-27 00:52:40,225 | INFO     | . log creation = 0 s
[2025-11-26 19:53:25] 2025-11-27 00:52:40,225 | INFO     | ..............................
[2025-11-26 19:53:25] 2025-11-27 00:52:40,313 | INFO     | 
[2025-11-26 19:53:25] 2025-11-27 00:52:40,314 | INFO     | job summary report
[2025-11-26 19:53:25] 2025-11-27 00:52:40,314 | INFO     | --------------------------------------------------
[2025-11-26 19:53:25] 2025-11-27 00:52:40,314 | INFO     | PanDA job id: 6895559441
[2025-11-26 19:53:25] 2025-11-27 00:52:40,314 | INFO     | task id: 47556149
[2025-11-26 19:53:25] 2025-11-27 00:52:40,314 | INFO     | errors: (none)
[2025-11-26 19:53:25] 2025-11-27 00:52:40,315 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 19:53:25] 2025-11-27 00:52:40,315 | INFO     | pilot state: finished 
[2025-11-26 19:53:25] 2025-11-27 00:52:40,315 | INFO     | transexitcode: 0
[2025-11-26 19:53:25] 2025-11-27 00:52:40,315 | INFO     | exeerrorcode: 0
[2025-11-26 19:53:25] 2025-11-27 00:52:40,315 | INFO     | exeerrordiag: 
[2025-11-26 19:53:25] 2025-11-27 00:52:40,315 | INFO     | exitcode: 0
[2025-11-26 19:53:25] 2025-11-27 00:52:40,316 | INFO     | exitmsg: OK
[2025-11-26 19:53:25] 2025-11-27 00:52:40,316 | INFO     | cpuconsumptiontime: 350283 s
[2025-11-26 19:53:25] 2025-11-27 00:52:40,316 | INFO     | nevents: 1000
[2025-11-26 19:53:25] 2025-11-27 00:52:40,316 | INFO     | neventsw: 0
[2025-11-26 19:53:25] 2025-11-27 00:52:40,316 | INFO     | pid: 24858
[2025-11-26 19:53:25] 2025-11-27 00:52:40,316 | INFO     | pgrp: 24858
[2025-11-26 19:53:25] 2025-11-27 00:52:40,316 | INFO     | corecount: 8
[2025-11-26 19:53:25] 2025-11-27 00:52:40,317 | INFO     | event service: False
[2025-11-26 19:53:25] 2025-11-27 00:52:40,317 | INFO     | sizes: {0: 2284314, 1: 2284314, 6: 2284604, 11: 2284632, 45125: 2330614, 45130: 2339608, 45131: 2339792, 45138: 2340038}
[2025-11-26 19:53:25] 2025-11-27 00:52:40,317 | INFO     | --------------------------------------------------
[2025-11-26 19:53:25] 2025-11-27 00:52:40,317 | INFO     | 
[2025-11-26 19:53:25] 2025-11-27 00:52:40,317 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-26 19:53:25] 2025-11-27 00:52:40,346 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 19:53:25] 2025-11-27 00:52:40,347 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 19:53:25] 2025-11-27 00:52:40,347 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 19:53:25] 2025-11-27 00:52:40,347 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 19:53:25] 2025-11-27 00:52:40,347 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 19:53:25] 2025-11-27 00:52:40,347 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 19:53:25] 2025-11-27 00:52:40,347 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 19:53:25] 2025-11-27 00:52:40,347 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 19:53:25] 2025-11-27 00:52:40,347 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 19:53:25] 2025-11-27 00:52:40,348 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 19:53:25] 2025-11-27 00:52:40,348 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 19:53:25] 2025-11-27 00:52:40,348 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 19:53:25] 2025-11-27 00:52:40,348 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 19:53:25] 2025-11-27 00:52:40,348 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 19:53:25] 2025-11-27 00:52:40,348 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 19:53:25] 2025-11-27 00:52:40,348 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 19:53:25] 2025-11-27 00:52:40,349 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 19:53:25] 2025-11-27 00:52:40,349 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 19:53:25] 2025-11-27 00:52:40,349 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 19:53:25] 2025-11-27 00:52:40,349 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 19:53:25] 2025-11-27 00:52:40,349 | INFO     | job 6895559441 has completed (purged errors)
[2025-11-26 19:53:25] 2025-11-27 00:52:40,349 | INFO     | overall cleanup function is called
[2025-11-26 19:53:25] 2025-11-27 00:52:41,362 | INFO     | --- collectZombieJob: --- 10, [24858]
[2025-11-26 19:53:25] 2025-11-27 00:52:41,369 | INFO     | zombie collector waiting for pid 24858
[2025-11-26 19:53:25] 2025-11-27 00:52:41,369 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 19:53:25] 2025-11-27 00:52:41,370 | INFO     | collected zombie processes
[2025-11-26 19:53:25] 2025-11-27 00:52:41,370 | INFO     | will attempt to kill all subprocesses of pid=24858
[2025-11-26 19:53:25] 2025-11-27 00:52:41,460 | INFO     | process IDs to be killed: [24858] (in reverse order)
[2025-11-26 19:53:25] 2025-11-27 00:52:41,521 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 19:53:25] 2025-11-27 00:52:41,521 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 19:53:25] 2025-11-27 00:52:41,525 | INFO     | did not find any defunct processes belonging to 24858
[2025-11-26 19:53:25] 2025-11-27 00:52:41,528 | INFO     | did not find any defunct processes belonging to 24858
[2025-11-26 19:53:25] 2025-11-27 00:52:41,531 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 19:53:25] 2025-11-27 00:52:41,531 | INFO     | ready for new job
[2025-11-26 19:53:25] 2025-11-27 00:52:41,531 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 19:53:25] 2025-11-27 00:52:41,535 | INFO     | ***************************************
[2025-11-26 19:53:25] 2025-11-27 00:52:41,535 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 19:53:25] 2025-11-27 00:52:41,535 | INFO     | ***************************************
[2025-11-26 19:53:25] 2025-11-27 00:52:41,535 | INFO     | 
[2025-11-26 19:53:25] 2025-11-27 00:52:41,536 | INFO     | architecture information:
[2025-11-26 19:53:25] 2025-11-27 00:52:41,537 | INFO     | executing command: cat /etc/os-release
[2025-11-26 19:53:25] 2025-11-27 00:52:41,556 | INFO     | cat /etc/os-release:
[2025-11-26 19:53:25] NAME="CentOS Linux"
[2025-11-26 19:53:25] VERSION="7 (Core)"
[2025-11-26 19:53:25] ID="centos"
[2025-11-26 19:53:25] ID_LIKE="rhel fedora"
[2025-11-26 19:53:25] VERSION_ID="7"
[2025-11-26 19:53:25] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 19:53:25] ANSI_COLOR="0;31"
[2025-11-26 19:53:25] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 19:53:25] HOME_URL="https://www.centos.org/"
[2025-11-26 19:53:25] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 19:53:25] 
[2025-11-26 19:53:25] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 19:53:25] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 19:53:25] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 19:53:25] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 19:53:25] 
[2025-11-26 19:53:25] 2025-11-27 00:52:41,556 | INFO     | ***************************************
[2025-11-26 19:53:25] 2025-11-27 00:52:42,059 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-26 19:53:25] 2025-11-27 00:52:42,082 | INFO     | sufficient remaining disk space (17436770304 B)
[2025-11-26 19:53:25] 2025-11-27 00:52:42,082 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 19:53:25] 2025-11-27 00:52:42,082 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 19:53:25] 2025-11-27 00:52:42,082 | INFO     | update_server=False
[2025-11-26 19:53:25] 2025-11-27 00:52:42,083 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 19:53:25] 2025-11-27 00:52:42,083 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 19:53:25] 2025-11-27 00:52:42,168 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 19:53:25] 2025-11-27 00:52:42,168 | INFO     | aborting loop
[2025-11-26 19:53:25] 2025-11-27 00:52:42,388 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 19:53:25] 2025-11-27 00:52:42,422 | INFO     | all data control threads have been joined
[2025-11-26 19:53:25] 2025-11-27 00:52:42,788 | INFO     | all job control threads have been joined
[2025-11-26 19:53:25] 2025-11-27 00:52:43,085 | INFO     | [job] queue monitor thread has finished
[2025-11-26 19:53:25] 2025-11-27 00:52:43,088 | INFO     | [job] retrieve thread has finished
[2025-11-26 19:53:25] 2025-11-27 00:52:43,102 | INFO     | [job] validate thread has finished
[2025-11-26 19:53:25] 2025-11-27 00:52:43,103 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 19:53:25] 2025-11-27 00:52:43,174 | INFO     | [job] job monitor thread has finished
[2025-11-26 19:53:25] 2025-11-27 00:52:43,189 | INFO     | [data] copytool_in thread has finished
[2025-11-26 19:53:25] 2025-11-27 00:52:43,201 | INFO     | all payload control threads have been joined
[2025-11-26 19:53:25] 2025-11-27 00:52:43,428 | INFO     | [data] control thread has finished
[2025-11-26 19:53:25] 2025-11-27 00:52:43,794 | INFO     | [job] control thread has finished
[2025-11-26 19:53:25] 2025-11-27 00:52:43,842 | INFO     | [payload] failed_post thread has finished
[2025-11-26 19:53:25] 2025-11-27 00:52:44,013 | INFO     | [payload] validate_post thread has finished
[2025-11-26 19:53:25] 2025-11-27 00:52:44,207 | INFO     | [payload] control thread has finished
[2025-11-26 19:53:25] 2025-11-27 00:52:44,394 | INFO     | [data] copytool_out thread has finished
[2025-11-26 19:53:25] 2025-11-27 00:52:44,402 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 19:53:25] 2025-11-27 00:52:44,518 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 19:53:25] 2025-11-27 00:52:44,547 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 19:53:25] 2025-11-27 00:52:44,551 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 19:53:25] 2025-11-27 00:52:47,109 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 19:53:25] 2025-11-27 00:53:11,704 | INFO     | PID=16180 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-26 19:53:25] 2025-11-27 00:53:11,705 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 19:53:25] 2025-11-27 00:53:11,705 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 19:53:25] 2025-11-27 00:53:11,705 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 19:53:25] 2025-11-27 00:53:18,973 | INFO     | [monitor] cgroup control has ended
[2025-11-26 19:53:25] 2025-11-27 00:53:20,032 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139949951661888)>', '<ExcThread(monitor, started 139949043062528)>']
[2025-11-26 19:53:25] 2025-11-27 00:53:20,748 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 19:53:25] 2025-11-27 00:53:20,748 | INFO     | [monitor] control thread has ended
[2025-11-26 19:53:25] 2025-11-27 00:53:25,057 | INFO     | all workflow threads have been joined
[2025-11-26 19:53:25] 2025-11-27 00:53:25,057 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 19:53:25] 2025-11-27 00:53:25,058 | INFO     | traces error code: 0
[2025-11-26 19:53:25] 2025-11-27 00:53:25,058 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 19:53:25] 2025-11-27 00:53:25,176 [wrapper] ==== pilot stdout END ====
[2025-11-26 19:53:25] 2025-11-27 00:53:25,180 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 19:53:25] 2025-11-27 00:53:25,185 [wrapper] pilotpid: 16180
[2025-11-26 19:53:25] 2025-11-27 00:53:25,190 [wrapper] Pilot exit status: 0
[2025-11-26 19:53:25] 2025-11-27 00:53:25,209 [wrapper] pandaids: 6895559441
[2025-11-26 19:53:25] 2025-11-27 00:53:25,266 [wrapper] cleanup supervisor_pilot 12063 16181
[2025-11-26 19:53:25] 2025-11-27 00:53:25,272 [wrapper] Test setup, not cleaning
[2025-11-26 19:53:25] 2025-11-27 00:53:25,277 [wrapper] apfmon messages muted
[2025-11-26 19:53:25] 2025-11-27 00:53:25,282 [wrapper] ==== wrapper stdout END ====
[2025-11-26 19:53:25] 2025-11-27 00:53:25,287 [wrapper] ==== wrapper stderr END ====
[2025-11-26 19:53:25]  *** Error codes and diagnostics ***
[2025-11-26 19:53:25]     "exeErrorCode": 0,
[2025-11-26 19:53:25]     "exeErrorDiag": "",
[2025-11-26 19:53:25]     "pilotErrorCode": 0,
[2025-11-26 19:53:25]     "pilotErrorDiag": "",
[2025-11-26 19:53:25]  *** Listing of results directory ***
[2025-11-26 19:53:25] total 1316876
[2025-11-26 19:53:25] -rw-r--r-- 1 boincer umatlas    598293 Nov  6 03:41 pilot3.tar.gz
[2025-11-26 19:53:25] -rw-r--r-- 1 boincer umatlas      5112 Nov 24 05:31 queuedata.json
[2025-11-26 19:53:25] -rwx------ 1 boincer umatlas     36292 Nov 24 05:33 runpilot2-wrapper.sh
[2025-11-26 19:53:25] -rw-r--r-- 1 boincer umatlas       100 Nov 26 07:19 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 19:53:25] -rwxr-xr-x 1 boincer umatlas      7986 Nov 26 07:19 run_atlas
[2025-11-26 19:53:25] -rw-r--r-- 1 boincer umatlas       105 Nov 26 07:19 job.xml
[2025-11-26 19:53:25] -rw-r--r-- 2 boincer umatlas 408773880 Nov 26 07:19 EVNT.47483658._001306.pool.root.1
[2025-11-26 19:53:25] -rw-r--r-- 2 boincer umatlas     15847 Nov 26 07:19 start_atlas.sh
[2025-11-26 19:53:25] drwxrwx--x 2 boincer umatlas      4096 Nov 26 07:19 shared
[2025-11-26 19:53:25] -rw-r--r-- 2 boincer umatlas    611288 Nov 26 07:19 input.tar.gz
[2025-11-26 19:53:25] -rw-r--r-- 1 boincer umatlas         0 Nov 26 07:19 boinc_lockfile
[2025-11-26 19:53:25] -rw-r--r-- 1 boincer umatlas      2785 Nov 26 07:19 pandaJob.out
[2025-11-26 19:53:25] -rw------- 1 boincer umatlas        57 Nov 26 07:19 setup.sh.local
[2025-11-26 19:53:25] -rw------- 1 boincer umatlas    991830 Nov 26 07:20 agis_schedconf.cvmfs.json
[2025-11-26 19:53:25] drwx------ 7 boincer umatlas      4096 Nov 26 07:20 pilot3
[2025-11-26 19:53:25] -rw-r--r-- 1 boincer umatlas       533 Nov 26 19:43 boinc_task_state.xml
[2025-11-26 19:53:25] -rw-r--r-- 1 boincer umatlas      5913 Nov 26 19:47 init_data.xml
[2025-11-26 19:53:25] -rw------- 1 boincer umatlas 919367822 Nov 26 19:51 HITS.47556149._002928.pool.root.1
[2025-11-26 19:53:25] -rw------- 1 boincer umatlas        95 Nov 26 19:52 pilot_heartbeat.json
[2025-11-26 19:53:25] -rw------- 1 boincer umatlas      1062 Nov 26 19:52 memory_monitor_summary.json
[2025-11-26 19:53:25] -rw------- 1 boincer umatlas   1516240 Nov 26 19:52 agis_ddmendpoints.agis.ALL.json
[2025-11-26 19:53:25] -rw------- 1 boincer umatlas   1980016 Nov 26 19:52 log.47556149._002928.job.log.tgz.1
[2025-11-26 19:53:25] -rw------- 1 boincer umatlas      8672 Nov 26 19:52 heartbeat.json
[2025-11-26 19:53:25] -rw-r--r-- 1 boincer umatlas      8192 Nov 26 19:53 boinc_mmap_file
[2025-11-26 19:53:25] -rw-r--r-- 1 boincer umatlas        29 Nov 26 19:53 wrapper_checkpoint.txt
[2025-11-26 19:53:25] -rw------- 1 boincer umatlas      4746 Nov 26 19:53 pilotlog.txt
[2025-11-26 19:53:25] -rw------- 1 boincer umatlas   6207275 Nov 26 19:53 log.47556149._002928.job.log.1
[2025-11-26 19:53:25] -rw------- 1 boincer umatlas       353 Nov 26 19:53 output.list
[2025-11-26 19:53:25] -rw-r--r-- 1 boincer umatlas       620 Nov 26 19:53 runtime_log
[2025-11-26 19:53:25] -rw------- 1 boincer umatlas   8202240 Nov 26 19:53 result.tar.gz
[2025-11-26 19:53:25] -rw-r--r-- 1 boincer umatlas      9343 Nov 26 19:53 runtime_log.err
[2025-11-26 19:53:25] -rw------- 1 boincer umatlas       668 Nov 26 19:53 GMcKDm83ih8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmB1IKDmVekVdn.diag
[2025-11-26 19:53:25] -rw-r--r-- 1 boincer umatlas     21418 Nov 26 19:53 stderr.txt
[2025-11-26 19:53:25] HITS file was successfully produced:
[2025-11-26 19:53:25] -rw------- 1 boincer umatlas 919367822 Nov 26 19:51 shared/HITS.pool.root.1
[2025-11-26 19:53:25]  *** Contents of shared directory: ***
[2025-11-26 19:53:25] total 1305652
[2025-11-26 19:53:25] -rw-r--r-- 2 boincer umatlas 408773880 Nov 26 07:19 ATLAS.root_0
[2025-11-26 19:53:25] -rw-r--r-- 2 boincer umatlas     15847 Nov 26 07:19 start_atlas.sh
[2025-11-26 19:53:25] -rw-r--r-- 2 boincer umatlas    611288 Nov 26 07:19 input.tar.gz
[2025-11-26 19:53:25] -rw------- 1 boincer umatlas 919367822 Nov 26 19:51 HITS.pool.root.1
[2025-11-26 19:53:25] -rw------- 1 boincer umatlas   8202240 Nov 26 19:53 result.tar.gz
19:53:26 (12497): run_atlas exited; CPU time 346740.773868
19:53:26 (12497): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN