Stderr output

<core_client_version>7.16.6</core_client_version>
<![CDATA[
<stderr_txt>
12:45:28 (762939): wrapper (7.7.26015): starting
12:45:28 (762939): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 12:45:28] Arguments: --nthreads 8
[2025-11-26 12:45:28] Threads: 8
[2025-11-26 12:45:28] Checking for CVMFS
[2025-11-26 12:45:28] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 12:45:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 12:45:28] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 12:45:29] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 12:45:29] 2.11.5.0 5755 1013 191248 153320 1 66 3451464 4194305 14403 130560 0 8247847 99.999 39766 784 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://127.0.0.1:3128 1
[2025-11-26 12:45:29] CVMFS is ok
[2025-11-26 12:45:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 12:45:29] Checking for apptainer binary...
[2025-11-26 12:45:29] apptainer is not installed, using version from CVMFS
[2025-11-26 12:45:29] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 12:45:29] mikemint-desktop
[2025-11-26 12:45:29] apptainer works
[2025-11-26 12:45:29] Set ATHENA_PROC_NUMBER=8
[2025-11-26 12:45:29] Set ATHENA_CORE_NUMBER=8
[2025-11-26 12:45:29] Starting ATLAS job with PandaID=6894053143
[2025-11-26 12:45:29] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 18:08:32]  *** The last 200 lines of the pilot log: ***
[2025-11-26 18:08:32] 2025-11-26 17:07:10,797 | INFO     | found 64 cores (64 cores per socket, 1 socket) HT, CPU MHz: 2356.3201562499994
[2025-11-26 18:08:32] 2025-11-26 17:07:10,890 | INFO     | using path: /var/lib/boinc-client/slots/4/PanDA_Pilot-6894053143/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 18:08:32] 2025-11-26 17:07:10,891 | INFO     | extracted standard info from prmon json
[2025-11-26 18:08:32] 2025-11-26 17:07:10,892 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 18:08:32] 2025-11-26 17:07:10,892 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 18:08:32] 2025-11-26 17:07:10,892 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-26 18:08:32] 2025-11-26 17:07:10,892 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-26 18:08:32] 2025-11-26 17:07:10,906 | INFO     | fitting pss+swap vs Time
[2025-11-26 18:08:32] 2025-11-26 17:07:10,907 | INFO     | sum of square deviations: 9599817202.5
[2025-11-26 18:08:32] 2025-11-26 17:07:10,914 | INFO     | sum of deviations: -11551767640.000004
[2025-11-26 18:08:32] 2025-11-26 17:07:10,914 | INFO     | mean x: 1764167178.5
[2025-11-26 18:08:32] 2025-11-26 17:07:10,914 | INFO     | mean y: 2574537.439490446
[2025-11-26 18:08:32] 2025-11-26 17:07:10,915 | INFO     | intersect: 2125453431.3041792
[2025-11-26 18:08:32] 2025-11-26 17:07:10,915 | INFO     | chi2: 3.1619196034574233
[2025-11-26 18:08:32] 2025-11-26 17:07:10,916 | INFO     | sum of square deviations: 9148487810.0
[2025-11-26 18:08:32] 2025-11-26 17:07:10,928 | INFO     | sum of deviations: 30808986960.0
[2025-11-26 18:08:32] 2025-11-26 17:07:10,929 | INFO     | mean x: 1764167026.0
[2025-11-26 18:08:32] 2025-11-26 17:07:10,929 | INFO     | mean y: 2588713.741100324
[2025-11-26 18:08:32] 2025-11-26 17:07:10,929 | INFO     | intersect: -5938524181.428837
[2025-11-26 18:08:32] 2025-11-26 17:07:10,929 | INFO     | chi2: 1.6466623475018445
[2025-11-26 18:08:32] 2025-11-26 17:07:10,929 | INFO     | current chi2=1.6466623475018445 (change=47.92206779383986 %)
[2025-11-26 18:08:32] 2025-11-26 17:07:10,930 | INFO     | sum of square deviations: 8711530780.0
[2025-11-26 18:08:32] 2025-11-26 17:07:10,933 | INFO     | sum of deviations: 30005942486.5
[2025-11-26 18:08:32] 2025-11-26 17:07:10,933 | INFO     | mean x: 1764166873.5
[2025-11-26 18:08:32] 2025-11-26 17:07:10,933 | INFO     | mean y: 2588433.5164473685
[2025-11-26 18:08:32] 2025-11-26 17:07:10,933 | INFO     | intersect: -6073896983.301368
[2025-11-26 18:08:32] 2025-11-26 17:07:10,938 | INFO     | chi2: 1.6470935898638253
[2025-11-26 18:08:32] 2025-11-26 17:07:10,938 | INFO     | current chi2=1.6470935898638253 (change=-0.026188876100496007 %)
[2025-11-26 18:08:32] 2025-11-26 17:07:10,938 | INFO     | right removable region: 303
[2025-11-26 18:08:32] 2025-11-26 17:07:10,939 | INFO     | sum of square deviations: 9148487810.0
[2025-11-26 18:08:32] 2025-11-26 17:07:10,946 | INFO     | sum of deviations: -60718333903.000015
[2025-11-26 18:08:32] 2025-11-26 17:07:10,946 | INFO     | mean x: 1764167331.0
[2025-11-26 18:08:32] 2025-11-26 17:07:10,947 | INFO     | mean y: 2591028.2459546924
[2025-11-26 18:08:32] 2025-11-26 17:07:10,947 | INFO     | intersect: 11711334952.824934
[2025-11-26 18:08:32] 2025-11-26 17:07:10,947 | INFO     | chi2: 1.7319756331096663
[2025-11-26 18:08:32] 2025-11-26 17:07:10,947 | INFO     | current chi2=1.7319756331096663 (change=45.2239193173721 %)
[2025-11-26 18:08:32] 2025-11-26 17:07:10,948 | INFO     | sum of square deviations: 8711530780.0
[2025-11-26 18:08:32] 2025-11-26 17:07:10,955 | INFO     | sum of deviations: -58078228313.5
[2025-11-26 18:08:32] 2025-11-26 17:07:10,955 | INFO     | mean x: 1764167483.5
[2025-11-26 18:08:32] 2025-11-26 17:07:10,955 | INFO     | mean y: 2590093.509868421
[2025-11-26 18:08:32] 2025-11-26 17:07:10,956 | INFO     | intersect: 11763981343.506203
[2025-11-26 18:08:32] 2025-11-26 17:07:10,956 | INFO     | chi2: 1.7214935112449274
[2025-11-26 18:08:32] 2025-11-26 17:07:10,956 | INFO     | current chi2=1.7214935112449274 (change=0.60521185543002 %)
[2025-11-26 18:08:32] 2025-11-26 17:07:10,956 | INFO     | left removable region: 20
[2025-11-26 18:08:32] 2025-11-26 17:07:10,957 | INFO     | sum of square deviations: 7028008982.0
[2025-11-26 18:08:32] 2025-11-26 17:07:10,971 | INFO     | sum of deviations: 14098726565.000002
[2025-11-26 18:08:32] 2025-11-26 17:07:10,971 | INFO     | mean x: 1764167453.0
[2025-11-26 18:08:32] 2025-11-26 17:07:10,971 | INFO     | mean y: 2592930.3992932863
[2025-11-26 18:08:32] 2025-11-26 17:07:10,971 | INFO     | intersect: -3536462668.195201
[2025-11-26 18:08:32] 2025-11-26 17:07:10,972 | INFO     | chi2: 0.00264309582252113
[2025-11-26 18:08:32] 2025-11-26 17:07:10,972 | INFO     | current memory leak: 2.01 B/s (using 283 data points, chi2=0.00)
[2025-11-26 18:08:32] 2025-11-26 17:07:10,972 | INFO     | could have reported an average CPU frequency of 2364 MHz (14 samples)
[2025-11-26 18:08:32] 2025-11-26 17:07:10,973 | INFO     | ..............................
[2025-11-26 18:08:32] 2025-11-26 17:07:10,973 | INFO     | . Timing measurements:
[2025-11-26 18:08:32] 2025-11-26 17:07:10,973 | INFO     | . get job = 0 s
[2025-11-26 18:08:32] 2025-11-26 17:07:10,973 | INFO     | . initial setup = 2 s
[2025-11-26 18:08:32] 2025-11-26 17:07:10,973 | INFO     | . payload setup = 23 s
[2025-11-26 18:08:32] 2025-11-26 17:07:10,973 | INFO     | . stage-in = 0 s
[2025-11-26 18:08:32] 2025-11-26 17:07:10,973 | INFO     | . payload execution = 19117 s
[2025-11-26 18:08:32] 2025-11-26 17:07:10,973 | INFO     | . stage-out = 5 s
[2025-11-26 18:08:32] 2025-11-26 17:07:10,973 | INFO     | . log creation = 1 s
[2025-11-26 18:08:32] 2025-11-26 17:07:10,973 | INFO     | ..............................
[2025-11-26 18:08:32] 2025-11-26 17:07:11,130 | INFO     | 
[2025-11-26 18:08:32] 2025-11-26 17:07:11,130 | INFO     | job summary report
[2025-11-26 18:08:32] 2025-11-26 17:07:11,130 | INFO     | --------------------------------------------------
[2025-11-26 18:08:32] 2025-11-26 17:07:11,130 | INFO     | PanDA job id: 6894053143
[2025-11-26 18:08:32] 2025-11-26 17:07:11,130 | INFO     | task id: 47523618
[2025-11-26 18:08:32] 2025-11-26 17:07:11,130 | INFO     | errors: (none)
[2025-11-26 18:08:32] 2025-11-26 17:07:11,130 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 18:08:32] 2025-11-26 17:07:11,130 | INFO     | pilot state: finished 
[2025-11-26 18:08:32] 2025-11-26 17:07:11,130 | INFO     | transexitcode: 0
[2025-11-26 18:08:32] 2025-11-26 17:07:11,130 | INFO     | exeerrorcode: 0
[2025-11-26 18:08:32] 2025-11-26 17:07:11,131 | INFO     | exeerrordiag: 
[2025-11-26 18:08:32] 2025-11-26 17:07:11,131 | INFO     | exitcode: 0
[2025-11-26 18:08:32] 2025-11-26 17:07:11,131 | INFO     | exitmsg: OK
[2025-11-26 18:08:32] 2025-11-26 17:07:11,131 | INFO     | cpuconsumptiontime: 86955 s
[2025-11-26 18:08:32] 2025-11-26 17:07:11,131 | INFO     | nevents: 400
[2025-11-26 18:08:32] 2025-11-26 17:07:11,131 | INFO     | neventsw: 0
[2025-11-26 18:08:32] 2025-11-26 17:07:11,131 | INFO     | pid: 818933
[2025-11-26 18:08:32] 2025-11-26 17:07:11,131 | INFO     | pgrp: 818933
[2025-11-26 18:08:32] 2025-11-26 17:07:11,131 | INFO     | corecount: 8
[2025-11-26 18:08:32] 2025-11-26 17:07:11,131 | INFO     | event service: False
[2025-11-26 18:08:32] 2025-11-26 17:07:11,131 | INFO     | sizes: {0: 2283675, 1: 2283930, 2: 2283930, 12: 2283958, 13: 2284248, 23: 2284304, 19145: 2317434, 19152: 2326446, 19155: 2326502, 19245: 2326696}
[2025-11-26 18:08:32] 2025-11-26 17:07:11,131 | INFO     | --------------------------------------------------
[2025-11-26 18:08:32] 2025-11-26 17:07:11,131 | INFO     | 
[2025-11-26 18:08:32] 2025-11-26 17:07:11,132 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/4
[2025-11-26 18:08:32] 2025-11-26 17:07:11,719 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 18:08:32] 2025-11-26 17:07:11,719 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 18:08:32] 2025-11-26 17:07:11,719 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 18:08:32] 2025-11-26 17:07:11,719 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 18:08:32] 2025-11-26 17:07:11,720 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 18:08:32] 2025-11-26 17:07:11,720 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 18:08:32] 2025-11-26 17:07:11,720 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 18:08:32] 2025-11-26 17:07:11,720 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 18:08:32] 2025-11-26 17:07:11,720 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 18:08:32] 2025-11-26 17:07:11,720 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 18:08:32] 2025-11-26 17:07:11,720 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 18:08:32] 2025-11-26 17:07:11,720 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 18:08:32] 2025-11-26 17:07:11,720 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 18:08:32] 2025-11-26 17:07:11,721 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 18:08:32] 2025-11-26 17:07:11,721 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 18:08:32] 2025-11-26 17:07:11,721 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 18:08:32] 2025-11-26 17:07:11,721 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 18:08:32] 2025-11-26 17:07:11,721 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 18:08:32] 2025-11-26 17:07:11,721 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 18:08:32] 2025-11-26 17:07:11,721 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 18:08:32] 2025-11-26 17:07:11,721 | INFO     | job 6894053143 has completed (purged errors)
[2025-11-26 18:08:32] 2025-11-26 17:07:11,722 | INFO     | overall cleanup function is called
[2025-11-26 18:08:32] 2025-11-26 17:07:12,734 | INFO     | --- collectZombieJob: --- 10, [818933]
[2025-11-26 18:08:32] 2025-11-26 17:07:12,734 | INFO     | zombie collector waiting for pid 818933
[2025-11-26 18:08:32] 2025-11-26 17:07:12,734 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 18:08:32] 2025-11-26 17:07:12,734 | INFO     | collected zombie processes
[2025-11-26 18:08:32] 2025-11-26 17:07:12,734 | INFO     | will attempt to kill all subprocesses of pid=818933
[2025-11-26 18:08:32] 2025-11-26 17:07:14,148 | INFO     | process IDs to be killed: [818933] (in reverse order)
[2025-11-26 18:08:32] 2025-11-26 17:07:21,813 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 18:08:32] 2025-11-26 17:07:21,818 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 18:08:32] 2025-11-26 17:07:21,856 | INFO     | did not find any defunct processes belonging to 818933
[2025-11-26 18:08:32] 2025-11-26 17:07:21,897 | INFO     | did not find any defunct processes belonging to 818933
[2025-11-26 18:08:32] 2025-11-26 17:07:21,962 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 18:08:32] 2025-11-26 17:07:21,962 | INFO     | ready for new job
[2025-11-26 18:08:32] 2025-11-26 17:07:21,962 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 18:08:32] 2025-11-26 17:07:21,965 | INFO     | ***************************************
[2025-11-26 18:08:32] 2025-11-26 17:07:21,965 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 18:08:32] 2025-11-26 17:07:21,965 | INFO     | ***************************************
[2025-11-26 18:08:32] 2025-11-26 17:07:21,974 | INFO     | 
[2025-11-26 18:08:32] 2025-11-26 17:07:21,989 | INFO     | architecture information:
[2025-11-26 18:08:32] 2025-11-26 17:07:22,002 | INFO     | executing command: cat /etc/os-release
[2025-11-26 18:08:32] 2025-11-26 17:07:22,250 | INFO     | cat /etc/os-release:
[2025-11-26 18:08:32] NAME="CentOS Linux"
[2025-11-26 18:08:32] VERSION="7 (Core)"
[2025-11-26 18:08:32] ID="centos"
[2025-11-26 18:08:32] ID_LIKE="rhel fedora"
[2025-11-26 18:08:32] VERSION_ID="7"
[2025-11-26 18:08:32] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 18:08:32] ANSI_COLOR="0;31"
[2025-11-26 18:08:32] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 18:08:32] HOME_URL="https://www.centos.org/"
[2025-11-26 18:08:32] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 18:08:32] 
[2025-11-26 18:08:32] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 18:08:32] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 18:08:32] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 18:08:32] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 18:08:32] 
[2025-11-26 18:08:32] 2025-11-26 17:07:22,251 | INFO     | ***************************************
[2025-11-26 18:08:32] 2025-11-26 17:07:22,754 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/4
[2025-11-26 18:08:32] 2025-11-26 17:07:22,992 | INFO     | sufficient remaining disk space (93926195200 B)
[2025-11-26 18:08:32] 2025-11-26 17:07:22,992 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 18:08:32] 2025-11-26 17:07:22,992 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 18:08:32] 2025-11-26 17:07:22,992 | INFO     | update_server=False
[2025-11-26 18:08:32] 2025-11-26 17:07:22,992 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 18:08:32] 2025-11-26 17:07:22,993 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 18:08:32] 2025-11-26 17:07:23,182 | INFO     | all job control threads have been joined
[2025-11-26 18:08:32] 2025-11-26 17:07:23,361 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-26 18:08:32] 2025-11-26 17:07:23,362 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-26 18:08:32] 2025-11-26 17:07:23,362 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 18:08:32] 2025-11-26 17:07:23,362 | INFO     | will abort loop
[2025-11-26 18:08:32] 2025-11-26 17:07:23,581 | INFO     | all data control threads have been joined
[2025-11-26 18:08:32] 2025-11-26 17:07:24,002 | INFO     | [job] retrieve thread has finished
[2025-11-26 18:08:32] 2025-11-26 17:07:24,186 | INFO     | [job] control thread has finished
[2025-11-26 18:08:32] 2025-11-26 17:07:24,198 | INFO     | [payload] validate_post thread has finished
[2025-11-26 18:08:32] 2025-11-26 17:07:24,201 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 18:08:32] 2025-11-26 17:07:24,282 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 18:08:32] 2025-11-26 17:07:24,282 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 18:08:32] 2025-11-26 17:07:24,340 | INFO     | all payload control threads have been joined
[2025-11-26 18:08:32] 2025-11-26 17:07:24,366 | INFO     | [job] job monitor thread has finished
[2025-11-26 18:08:32] 2025-11-26 17:07:24,446 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 18:08:32] 2025-11-26 17:07:24,453 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 18:08:32] 2025-11-26 17:07:24,586 | INFO     | [data] control thread has finished
[2025-11-26 18:08:32] 2025-11-26 17:07:24,754 | INFO     | [data] copytool_in thread has finished
[2025-11-26 18:08:32] 2025-11-26 17:07:24,758 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 18:08:32] 2025-11-26 17:07:25,174 | INFO     | [payload] failed_post thread has finished
[2025-11-26 18:08:32] 2025-11-26 17:07:25,206 | INFO     | [job] queue monitor thread has finished
[2025-11-26 18:08:32] 2025-11-26 17:07:25,346 | INFO     | [payload] control thread has finished
[2025-11-26 18:08:32] 2025-11-26 17:07:25,358 | INFO     | [job] validate thread has finished
[2025-11-26 18:08:32] 2025-11-26 17:07:26,466 | INFO     | [data] copytool_out thread has finished
[2025-11-26 18:08:32] 2025-11-26 17:07:27,006 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 18:08:32] 2025-11-26 17:07:44,964 | INFO     | PID=774366 has CPU usage=5.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-26 18:08:32] 2025-11-26 17:07:44,964 | INFO     | .. there are 25 such processes running
[2025-11-26 18:08:32] 2025-11-26 17:07:44,964 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 18:08:32] 2025-11-26 17:07:44,964 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 18:08:32] 2025-11-26 17:07:44,965 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 18:08:32] 2025-11-26 17:08:22,185 | INFO     | [monitor] cgroup control has ended
[2025-11-26 18:08:32] 2025-11-26 17:08:24,142 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140432478738240)>', '<ExcThread(monitor, started 140432033949440)>']
[2025-11-26 18:08:32] 2025-11-26 17:08:24,153 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 18:08:32] 2025-11-26 17:08:24,154 | INFO     | [monitor] control thread has ended
[2025-11-26 18:08:32] 2025-11-26 17:08:29,170 | INFO     | all workflow threads have been joined
[2025-11-26 18:08:32] 2025-11-26 17:08:29,170 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 18:08:32] 2025-11-26 17:08:29,170 | INFO     | traces error code: 0
[2025-11-26 18:08:32] 2025-11-26 17:08:29,170 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 18:08:32] 2025-11-26 17:08:29,618 [wrapper] ==== pilot stdout END ====
[2025-11-26 18:08:32] 2025-11-26 17:08:29,698 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 18:08:32] 2025-11-26 17:08:29,724 [wrapper] pilotpid: 774366
[2025-11-26 18:08:32] 2025-11-26 17:08:29,814 [wrapper] Pilot exit status: 0
[2025-11-26 18:08:32] 2025-11-26 17:08:30,126 [wrapper] pandaids: 6894053143
[2025-11-26 18:08:32] 2025-11-26 17:08:30,786 [wrapper] cleanup supervisor_pilot 1593775 774367
[2025-11-26 18:08:32] 2025-11-26 17:08:30,866 [wrapper] Test setup, not cleaning
[2025-11-26 18:08:32] 2025-11-26 17:08:30,938 [wrapper] apfmon messages muted
[2025-11-26 18:08:32] 2025-11-26 17:08:31,018 [wrapper] ==== wrapper stdout END ====
[2025-11-26 18:08:32] 2025-11-26 17:08:31,106 [wrapper] ==== wrapper stderr END ====
[2025-11-26 18:08:32]  *** Error codes and diagnostics ***
[2025-11-26 18:08:32]     "exeErrorCode": 0,
[2025-11-26 18:08:32]     "exeErrorDiag": "",
[2025-11-26 18:08:32]     "pilotErrorCode": 0,
[2025-11-26 18:08:32]     "pilotErrorDiag": "",
[2025-11-26 18:08:32]  *** Listing of results directory ***
[2025-11-26 18:08:32] insgesamt 601212
[2025-11-26 18:08:32] -rw-r--r-- 1 boinc boinc    576529 Nov 23 20:32 pilot3.tar.gz
[2025-11-26 18:08:32] -rw-r--r-- 1 boinc boinc      5112 Nov 23 20:40 queuedata.json
[2025-11-26 18:08:32] -rwx------ 1 boinc boinc     36292 Nov 23 20:40 runpilot2-wrapper.sh
[2025-11-26 18:08:32] -rw-r--r-- 1 boinc boinc       100 Nov 26 12:45 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 18:08:32] -rwxr-xr-x 1 boinc boinc      7986 Nov 26 12:45 run_atlas
[2025-11-26 18:08:32] -rw-r--r-- 1 boinc boinc       105 Nov 26 12:45 job.xml
[2025-11-26 18:08:32] -rw-r--r-- 2 boinc boinc 306029121 Nov 26 12:45 EVNT.47523616._000004.pool.root.1
[2025-11-26 18:08:32] -rw-r--r-- 2 boinc boinc     15847 Nov 26 12:45 start_atlas.sh
[2025-11-26 18:08:32] drwxrwx--x 2 boinc boinc      4096 Nov 26 12:45 shared
[2025-11-26 18:08:32] -rw-r--r-- 2 boinc boinc    589957 Nov 26 12:45 input.tar.gz
[2025-11-26 18:08:32] -rw-r--r-- 1 boinc boinc      6665 Nov 26 12:45 init_data.xml
[2025-11-26 18:08:32] -rw-r--r-- 1 boinc boinc         0 Nov 26 12:45 boinc_lockfile
[2025-11-26 18:08:32] -rw-r--r-- 1 boinc boinc      2610 Nov 26 12:45 pandaJob.out
[2025-11-26 18:08:32] -rw------- 1 boinc boinc        46 Nov 26 12:45 setup.sh.local
[2025-11-26 18:08:32] -rw------- 1 boinc boinc    991830 Nov 26 12:45 agis_schedconf.cvmfs.json
[2025-11-26 18:08:32] drwx------ 5 boinc boinc      4096 Nov 26 12:45 pilot3
[2025-11-26 18:08:32] -rw------- 1 boinc boinc 299732088 Nov 26 18:04 HITS.47523618._000089.pool.root.1
[2025-11-26 18:08:32] -rw-r--r-- 1 boinc boinc       531 Nov 26 18:04 boinc_task_state.xml
[2025-11-26 18:08:32] -rw------- 1 boinc boinc      1017 Nov 26 18:05 memory_monitor_summary.json
[2025-11-26 18:08:32] -rw------- 1 boinc boinc   1516240 Nov 26 18:05 agis_ddmendpoints.agis.ALL.json
[2025-11-26 18:08:32] -rw------- 1 boinc boinc    507991 Nov 26 18:05 log.47523618._000089.job.log.tgz.1
[2025-11-26 18:08:32] -rw------- 1 boinc boinc        95 Nov 26 18:06 pilot_heartbeat.json
[2025-11-26 18:08:32] -rw------- 1 boinc boinc      7736 Nov 26 18:07 heartbeat.json
[2025-11-26 18:08:32] -rw-r--r-- 1 boinc boinc        28 Nov 26 18:08 wrapper_checkpoint.txt
[2025-11-26 18:08:32] -rw------- 1 boinc boinc      5016 Nov 26 18:08 pilotlog.txt
[2025-11-26 18:08:32] -rw------- 1 boinc boinc   2469800 Nov 26 18:08 log.47523618._000089.job.log.1
[2025-11-26 18:08:32] -rw------- 1 boinc boinc       357 Nov 26 18:08 output.list
[2025-11-26 18:08:32] -rw-r--r-- 1 boinc boinc       620 Nov 26 18:08 runtime_log
[2025-11-26 18:08:32] -rw------- 1 boinc boinc   3000320 Nov 26 18:08 result.tar.gz
[2025-11-26 18:08:32] -rw-r--r-- 1 boinc boinc      9455 Nov 26 18:08 runtime_log.err
[2025-11-26 18:08:32] -rw------- 1 boinc boinc       671 Nov 26 18:08 mngMDmj7Uh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmZiIKDmTTFIMn.diag
[2025-11-26 18:08:32] -rw-r--r-- 1 boinc boinc      8192 Nov 26 18:08 boinc_mmap_file
[2025-11-26 18:08:32] -rw-r--r-- 1 boinc boinc     20963 Nov 26 18:08 stderr.txt
[2025-11-26 18:08:32] HITS file was successfully produced:
[2025-11-26 18:08:32] -rw------- 1 boinc boinc 299732088 Nov 26 18:04 shared/HITS.pool.root.1
[2025-11-26 18:08:32]  *** Contents of shared directory: ***
[2025-11-26 18:08:32] insgesamt 595104
[2025-11-26 18:08:32] -rw-r--r-- 2 boinc boinc 306029121 Nov 26 12:45 ATLAS.root_0
[2025-11-26 18:08:32] -rw-r--r-- 2 boinc boinc     15847 Nov 26 12:45 start_atlas.sh
[2025-11-26 18:08:32] -rw-r--r-- 2 boinc boinc    589957 Nov 26 12:45 input.tar.gz
[2025-11-26 18:08:32] -rw------- 1 boinc boinc 299732088 Nov 26 18:04 HITS.pool.root.1
[2025-11-26 18:08:32] -rw------- 1 boinc boinc   3000320 Nov 26 18:08 result.tar.gz
18:08:34 (762939): run_atlas exited; CPU time 88258.348757
18:08:34 (762939): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN