Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
08:10:32 (769400): wrapper (7.7.26015): starting
08:10:32 (769400): wrapper: running run_atlas (--nthreads 9)
[2025-11-26 08:10:32] Arguments: --nthreads 9
[2025-11-26 08:10:32] Threads: 9
[2025-11-26 08:10:32] Checking for CVMFS
[2025-11-26 08:10:33] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 08:10:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 08:10:33] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 08:10:34] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 08:10:34] 2.13.3.0 11226 28395 353236 153322 2 551 27423258 32935937 18055 16776704 0 66340438 99.477 91122865 40189 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 08:10:34] CVMFS is ok
[2025-11-26 08:10:34] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 08:10:34] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 08:10:34] Further information can be found at the LHC@home message board.
[2025-11-26 08:10:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 08:10:34] Checking for apptainer binary...
[2025-11-26 08:10:35] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 08:10:35] Running /usr/bin/apptainer --version
[2025-11-26 08:10:35] apptainer version 1.4.4-1.el9
[2025-11-26 08:10:35] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 08:10:35] c6-2-29-3.aglt2.org
[2025-11-26 08:10:35] apptainer works
[2025-11-26 08:10:35] Set ATHENA_PROC_NUMBER=9
[2025-11-26 08:10:35] Set ATHENA_CORE_NUMBER=9
[2025-11-26 08:10:35] Starting ATLAS job with PandaID=6896990119
[2025-11-26 08:10:35] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 23:29:20]  *** The last 200 lines of the pilot log: ***
[2025-11-26 23:29:20] 2025-11-27 04:28:14,678 | INFO     | time since job start (54997s) is within the limit (172800.0s)
[2025-11-26 23:29:20] 2025-11-27 04:28:15,453 | INFO     | monitor loop #3521: job 0:6896990119 is in state 'finished'
[2025-11-26 23:29:20] 2025-11-27 04:28:15,453 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 23:29:20] 2025-11-27 04:28:16,699 | INFO     | time since job start (54999s) is within the limit (172800.0s)
[2025-11-26 23:29:20] 2025-11-27 04:28:17,959 | INFO     | monitor loop #3522: job 0:6896990119 is in state 'finished'
[2025-11-26 23:29:20] 2025-11-27 04:28:17,959 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 23:29:20] 2025-11-27 04:28:18,706 | INFO     | time since job start (55001s) is within the limit (172800.0s)
[2025-11-26 23:29:20] 2025-11-27 04:28:20,473 | INFO     | monitor loop #3523: job 0:6896990119 is in state 'finished'
[2025-11-26 23:29:20] 2025-11-27 04:28:20,473 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 23:29:20] 2025-11-27 04:28:20,713 | INFO     | time since job start (55003s) is within the limit (172800.0s)
[2025-11-26 23:29:20] 2025-11-27 04:28:21,456 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-26 23:29:20] 2025-11-27 04:28:21,465 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2704.164607142857
[2025-11-26 23:29:20] 2025-11-27 04:28:21,490 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6896990119/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 23:29:20] 2025-11-27 04:28:21,491 | INFO     | extracted standard info from prmon json
[2025-11-26 23:29:20] 2025-11-27 04:28:21,491 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 23:29:20] 2025-11-27 04:28:21,491 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 23:29:20] 2025-11-27 04:28:21,530 | INFO     | fitting pss+swap vs Time
[2025-11-26 23:29:20] 2025-11-27 04:28:21,531 | INFO     | sum of square deviations: 225300823051.24893
[2025-11-26 23:29:20] 2025-11-27 04:28:21,571 | INFO     | sum of deviations: 1792188777595.9182
[2025-11-26 23:29:20] 2025-11-27 04:28:21,577 | INFO     | mean x: 1764190222.9710789
[2025-11-26 23:29:20] 2025-11-27 04:28:21,577 | INFO     | mean y: 3045089.6507230257
[2025-11-26 23:29:20] 2025-11-27 04:28:21,578 | INFO     | intersect: -14030467421.903688
[2025-11-26 23:29:20] 2025-11-27 04:28:21,579 | INFO     | chi2: 13.791592787230687
[2025-11-26 23:29:20] 2025-11-27 04:28:21,585 | INFO     | sum of square deviations: 221563088749.21375
[2025-11-26 23:29:20] 2025-11-27 04:28:21,627 | INFO     | sum of deviations: 2105101881043.195
[2025-11-26 23:29:20] 2025-11-27 04:28:21,627 | INFO     | mean x: 1764190070.4821029
[2025-11-26 23:29:20] 2025-11-27 04:28:21,628 | INFO     | mean y: 3057852.5123042506
[2025-11-26 23:29:20] 2025-11-27 04:28:21,628 | INFO     | intersect: -16758758643.434973
[2025-11-26 23:29:20] 2025-11-27 04:28:21,629 | INFO     | chi2: 10.639658007692148
[2025-11-26 23:29:20] 2025-11-27 04:28:21,630 | INFO     | current chi2=10.639658007692148 (change=22.854030191906784 %)
[2025-11-26 23:29:20] 2025-11-27 04:28:21,630 | INFO     | right removable region: 893
[2025-11-26 23:29:20] 2025-11-27 04:28:21,631 | INFO     | sum of square deviations: 221562007829.2138
[2025-11-26 23:29:20] 2025-11-27 04:28:21,673 | INFO     | sum of deviations: 1413187439682.064
[2025-11-26 23:29:20] 2025-11-27 04:28:21,674 | INFO     | mean x: 1764190375.4821029
[2025-11-26 23:29:20] 2025-11-27 04:28:21,674 | INFO     | mean y: 3060547.2852348993
[2025-11-26 23:29:20] 2025-11-27 04:28:21,674 | INFO     | intersect: -11249462862.599495
[2025-11-26 23:29:20] 2025-11-27 04:28:21,675 | INFO     | chi2: 9.746861669579427
[2025-11-26 23:29:20] 2025-11-27 04:28:21,676 | INFO     | current chi2=9.746861669579427 (change=29.32751263796145 %)
[2025-11-26 23:29:20] 2025-11-27 04:28:21,681 | INFO     | sum of square deviations: 217864937902.90878
[2025-11-26 23:29:20] 2025-11-27 04:28:21,724 | INFO     | sum of deviations: 1212457516107.9673
[2025-11-26 23:29:20] 2025-11-27 04:28:21,725 | INFO     | mean x: 1764190527.9898763
[2025-11-26 23:29:20] 2025-11-27 04:28:21,725 | INFO     | mean y: 3068818.329583802
[2025-11-26 23:29:20] 2025-11-27 04:28:21,725 | INFO     | intersect: -9814968384.43066
[2025-11-26 23:29:20] 2025-11-27 04:28:21,726 | INFO     | chi2: 8.624616329016373
[2025-11-26 23:29:20] 2025-11-27 04:28:21,727 | INFO     | current chi2=8.624616329016373 (change=11.513914720526436 %)
[2025-11-26 23:29:20] 2025-11-27 04:28:21,727 | INFO     | left removable region: 20
[2025-11-26 23:29:20] 2025-11-27 04:28:21,728 | INFO     | sum of square deviations: 206312784220.97134
[2025-11-26 23:29:20] 2025-11-27 04:28:21,767 | INFO     | sum of deviations: 1474976076316.2788
[2025-11-26 23:29:20] 2025-11-27 04:28:21,771 | INFO     | mean x: 1764190650.0057273
[2025-11-26 23:29:20] 2025-11-27 04:28:21,771 | INFO     | mean y: 3089859.544100802
[2025-11-26 23:29:20] 2025-11-27 04:28:21,771 | INFO     | intersect: -12609502290.985415
[2025-11-26 23:29:20] 2025-11-27 04:28:21,773 | INFO     | chi2: 4.598181303406121
[2025-11-26 23:29:20] 2025-11-27 04:28:21,773 | INFO     | current memory leak: 7.15 B/s (using 873 data points, chi2=4.60)
[2025-11-26 23:29:20] 2025-11-27 04:28:21,774 | INFO     | could have reported an average CPU frequency of 2897 MHz (33 samples)
[2025-11-26 23:29:20] 2025-11-27 04:28:21,774 | INFO     | ..............................
[2025-11-26 23:29:20] 2025-11-27 04:28:21,774 | INFO     | . Timing measurements:
[2025-11-26 23:29:20] 2025-11-27 04:28:21,775 | INFO     | . get job = 0 s
[2025-11-26 23:29:20] 2025-11-27 04:28:21,775 | INFO     | . initial setup = 4 s
[2025-11-26 23:29:20] 2025-11-27 04:28:21,775 | INFO     | . payload setup = 42 s
[2025-11-26 23:29:20] 2025-11-27 04:28:21,779 | INFO     | . stage-in = 0 s
[2025-11-26 23:29:20] 2025-11-27 04:28:21,779 | INFO     | . payload execution = 54839 s
[2025-11-26 23:29:20] 2025-11-27 04:28:21,779 | INFO     | . stage-out = 10 s
[2025-11-26 23:29:20] 2025-11-27 04:28:21,779 | INFO     | . log creation = 2 s
[2025-11-26 23:29:20] 2025-11-27 04:28:21,780 | INFO     | ..............................
[2025-11-26 23:29:20] 2025-11-27 04:28:22,017 | INFO     | 
[2025-11-26 23:29:20] 2025-11-27 04:28:22,017 | INFO     | job summary report
[2025-11-26 23:29:20] 2025-11-27 04:28:22,018 | INFO     | --------------------------------------------------
[2025-11-26 23:29:20] 2025-11-27 04:28:22,018 | INFO     | PanDA job id: 6896990119
[2025-11-26 23:29:20] 2025-11-27 04:28:22,018 | INFO     | task id: 47556173
[2025-11-26 23:29:20] 2025-11-27 04:28:22,018 | INFO     | errors: (none)
[2025-11-26 23:29:20] 2025-11-27 04:28:22,018 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 23:29:20] 2025-11-27 04:28:22,018 | INFO     | pilot state: finished 
[2025-11-26 23:29:20] 2025-11-27 04:28:22,018 | INFO     | transexitcode: 0
[2025-11-26 23:29:20] 2025-11-27 04:28:22,018 | INFO     | exeerrorcode: 0
[2025-11-26 23:29:20] 2025-11-27 04:28:22,018 | INFO     | exeerrordiag: 
[2025-11-26 23:29:20] 2025-11-27 04:28:22,018 | INFO     | exitcode: 0
[2025-11-26 23:29:20] 2025-11-27 04:28:22,019 | INFO     | exitmsg: OK
[2025-11-26 23:29:20] 2025-11-27 04:28:22,019 | INFO     | cpuconsumptiontime: 244623 s
[2025-11-26 23:29:20] 2025-11-27 04:28:22,019 | INFO     | nevents: 1000
[2025-11-26 23:29:20] 2025-11-27 04:28:22,019 | INFO     | neventsw: 0
[2025-11-26 23:29:20] 2025-11-27 04:28:22,019 | INFO     | pid: 783242
[2025-11-26 23:29:20] 2025-11-27 04:28:22,019 | INFO     | pgrp: 783242
[2025-11-26 23:29:20] 2025-11-27 04:28:22,019 | INFO     | corecount: 9
[2025-11-26 23:29:20] 2025-11-27 04:28:22,019 | INFO     | event service: False
[2025-11-26 23:29:20] 2025-11-27 04:28:22,019 | INFO     | sizes: {0: 2284029, 1: 2284113, 2: 2284312, 13: 2284312, 24: 2284368, 30: 2284658, 35: 2284814, 54886: 2336056, 54887: 2336055, 54899: 2345105, 54902: 2345161, 549
[2025-11-26 23:29:20] 2025-11-27 04:28:22,020 | INFO     | --------------------------------------------------
[2025-11-26 23:29:20] 2025-11-27 04:28:22,020 | INFO     | 
[2025-11-26 23:29:20] 2025-11-27 04:28:22,020 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-11-26 23:29:20] 2025-11-27 04:28:22,163 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 23:29:20] 2025-11-27 04:28:22,163 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 23:29:20] 2025-11-27 04:28:22,164 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 23:29:20] 2025-11-27 04:28:22,164 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 23:29:20] 2025-11-27 04:28:22,164 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 23:29:20] 2025-11-27 04:28:22,164 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 23:29:20] 2025-11-27 04:28:22,164 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 23:29:20] 2025-11-27 04:28:22,164 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 23:29:20] 2025-11-27 04:28:22,164 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 23:29:20] 2025-11-27 04:28:22,164 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 23:29:20] 2025-11-27 04:28:22,164 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 23:29:20] 2025-11-27 04:28:22,164 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 23:29:20] 2025-11-27 04:28:22,164 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 23:29:20] 2025-11-27 04:28:22,164 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 23:29:20] 2025-11-27 04:28:22,164 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 23:29:20] 2025-11-27 04:28:22,164 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 23:29:20] 2025-11-27 04:28:22,165 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 23:29:20] 2025-11-27 04:28:22,165 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 23:29:20] 2025-11-27 04:28:22,165 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 23:29:20] 2025-11-27 04:28:22,165 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 23:29:20] 2025-11-27 04:28:22,165 | INFO     | job 6896990119 has completed (purged errors)
[2025-11-26 23:29:20] 2025-11-27 04:28:22,165 | INFO     | overall cleanup function is called
[2025-11-26 23:29:20] 2025-11-27 04:28:23,200 | INFO     | --- collectZombieJob: --- 10, [783242]
[2025-11-26 23:29:20] 2025-11-27 04:28:23,200 | INFO     | zombie collector waiting for pid 783242
[2025-11-26 23:29:20] 2025-11-27 04:28:23,200 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 23:29:20] 2025-11-27 04:28:23,200 | INFO     | collected zombie processes
[2025-11-26 23:29:20] 2025-11-27 04:28:23,200 | INFO     | will attempt to kill all subprocesses of pid=783242
[2025-11-26 23:29:20] 2025-11-27 04:28:25,620 | INFO     | process IDs to be killed: [783242] (in reverse order)
[2025-11-26 23:29:20] 2025-11-27 04:28:26,155 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 23:29:20] 2025-11-27 04:28:26,155 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 23:29:20] 2025-11-27 04:28:26,169 | INFO     | did not find any defunct processes belonging to 783242
[2025-11-26 23:29:20] 2025-11-27 04:28:26,183 | INFO     | did not find any defunct processes belonging to 783242
[2025-11-26 23:29:20] 2025-11-27 04:28:26,200 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 23:29:20] 2025-11-27 04:28:26,200 | INFO     | ready for new job
[2025-11-26 23:29:20] 2025-11-27 04:28:26,200 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 23:29:20] 2025-11-27 04:28:26,206 | INFO     | ***************************************
[2025-11-26 23:29:20] 2025-11-27 04:28:26,206 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 23:29:20] 2025-11-27 04:28:26,206 | INFO     | ***************************************
[2025-11-26 23:29:20] 2025-11-27 04:28:26,206 | INFO     | 
[2025-11-26 23:29:20] 2025-11-27 04:28:26,209 | INFO     | architecture information:
[2025-11-26 23:29:20] 2025-11-27 04:28:26,210 | INFO     | executing command: cat /etc/os-release
[2025-11-26 23:29:20] 2025-11-27 04:28:26,231 | INFO     | cat /etc/os-release:
[2025-11-26 23:29:20] NAME="CentOS Linux"
[2025-11-26 23:29:20] VERSION="7 (Core)"
[2025-11-26 23:29:20] ID="centos"
[2025-11-26 23:29:20] ID_LIKE="rhel fedora"
[2025-11-26 23:29:20] VERSION_ID="7"
[2025-11-26 23:29:20] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 23:29:20] ANSI_COLOR="0;31"
[2025-11-26 23:29:20] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 23:29:20] HOME_URL="https://www.centos.org/"
[2025-11-26 23:29:20] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 23:29:20] 
[2025-11-26 23:29:20] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 23:29:20] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 23:29:20] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 23:29:20] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 23:29:20] 
[2025-11-26 23:29:20] 2025-11-27 04:28:26,232 | INFO     | ***************************************
[2025-11-26 23:29:20] 2025-11-27 04:28:26,735 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-11-26 23:29:20] 2025-11-27 04:28:26,891 | INFO     | sufficient remaining disk space (70408732672 B)
[2025-11-26 23:29:20] 2025-11-27 04:28:26,892 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 23:29:20] 2025-11-27 04:28:26,892 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 23:29:20] 2025-11-27 04:28:26,892 | INFO     | update_server=False
[2025-11-26 23:29:20] 2025-11-27 04:28:26,893 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 23:29:20] 2025-11-27 04:28:26,893 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 23:29:20] 2025-11-27 04:28:26,893 | INFO     | aborting loop
[2025-11-26 23:29:20] 2025-11-27 04:28:26,893 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 23:29:20] 2025-11-27 04:28:26,897 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 23:29:20] 2025-11-27 04:28:27,054 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 23:29:20] 2025-11-27 04:28:27,603 | INFO     | all data control threads have been joined
[2025-11-26 23:29:20] 2025-11-27 04:28:27,757 | INFO     | all job control threads have been joined
[2025-11-26 23:29:20] 2025-11-27 04:28:27,899 | INFO     | [job] retrieve thread has finished
[2025-11-26 23:29:20] 2025-11-27 04:28:27,900 | INFO     | [job] job monitor thread has finished
[2025-11-26 23:29:20] 2025-11-27 04:28:27,988 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 23:29:20] 2025-11-27 04:28:27,989 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 23:29:20] 2025-11-27 04:28:28,060 | INFO     | [job] queue monitor thread has finished
[2025-11-26 23:29:20] 2025-11-27 04:28:28,205 | INFO     | [data] copytool_in thread has finished
[2025-11-26 23:29:20] 2025-11-27 04:28:28,211 | INFO     | [job] validate thread has finished
[2025-11-26 23:29:20] 2025-11-27 04:28:28,226 | INFO     | all payload control threads have been joined
[2025-11-26 23:29:20] 2025-11-27 04:28:28,410 | INFO     | [payload] validate_post thread has finished
[2025-11-26 23:29:20] 2025-11-27 04:28:28,611 | INFO     | [data] control thread has finished
[2025-11-26 23:29:20] 2025-11-27 04:28:28,615 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 23:29:20] 2025-11-27 04:28:28,650 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 23:29:20] 2025-11-27 04:28:28,762 | INFO     | [job] control thread has finished
[2025-11-26 23:29:20] 2025-11-27 04:28:28,904 | INFO     | [data] copytool_out thread has finished
[2025-11-26 23:29:20] 2025-11-27 04:28:29,016 | INFO     | [payload] failed_post thread has finished
[2025-11-26 23:29:20] 2025-11-27 04:28:29,232 | INFO     | [payload] control thread has finished
[2025-11-26 23:29:20] 2025-11-27 04:28:30,901 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 23:29:20] 2025-11-27 04:28:56,649 | INFO     | PID=773540 has CPU usage=3.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-26 23:29:20] 2025-11-27 04:28:56,649 | INFO     | .. there are 25 such processes running
[2025-11-26 23:29:20] 2025-11-27 04:28:56,681 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 23:29:20] 2025-11-27 04:28:56,681 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 23:29:20] 2025-11-27 04:28:56,681 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 23:29:20] 2025-11-27 04:29:13,111 | INFO     | [monitor] cgroup control has ended
[2025-11-26 23:29:20] 2025-11-27 04:29:13,413 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140519204878144)>', '<ExcThread(monitor, started 140518570845952)>']
[2025-11-26 23:29:20] 2025-11-27 04:29:13,826 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 23:29:20] 2025-11-27 04:29:13,826 | INFO     | [monitor] control thread has ended
[2025-11-26 23:29:20] 2025-11-27 04:29:18,441 | INFO     | all workflow threads have been joined
[2025-11-26 23:29:20] 2025-11-27 04:29:18,441 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 23:29:20] 2025-11-27 04:29:18,441 | INFO     | traces error code: 0
[2025-11-26 23:29:20] 2025-11-27 04:29:18,442 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 23:29:20] 2025-11-27 04:29:19,211 [wrapper] ==== pilot stdout END ====
[2025-11-26 23:29:20] 2025-11-27 04:29:19,231 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 23:29:20] 2025-11-27 04:29:19,266 [wrapper] pilotpid: 773540
[2025-11-26 23:29:20] 2025-11-27 04:29:19,287 [wrapper] Pilot exit status: 0
[2025-11-26 23:29:20] 2025-11-27 04:29:19,330 [wrapper] pandaids: 6896990119
[2025-11-26 23:29:20] 2025-11-27 04:29:19,426 [wrapper] cleanup supervisor_pilot 3371515 773541
[2025-11-26 23:29:20] 2025-11-27 04:29:19,485 [wrapper] Test setup, not cleaning
[2025-11-26 23:29:20] 2025-11-27 04:29:19,558 [wrapper] apfmon messages muted
[2025-11-26 23:29:20] 2025-11-27 04:29:19,587 [wrapper] ==== wrapper stdout END ====
[2025-11-26 23:29:20] 2025-11-27 04:29:19,621 [wrapper] ==== wrapper stderr END ====
[2025-11-26 23:29:20]  *** Error codes and diagnostics ***
[2025-11-26 23:29:20]     "exeErrorCode": 0,
[2025-11-26 23:29:20]     "exeErrorDiag": "",
[2025-11-26 23:29:20]     "pilotErrorCode": 0,
[2025-11-26 23:29:20]     "pilotErrorDiag": "",
[2025-11-26 23:29:20]  *** Listing of results directory ***
[2025-11-26 23:29:20] total 1329580
[2025-11-26 23:29:20] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 07:49 pilot3.tar.gz
[2025-11-26 23:29:20] -rwx------. 1 boincer umatlas     36292 Nov 25 08:24 runpilot2-wrapper.sh
[2025-11-26 23:29:20] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 08:24 queuedata.json
[2025-11-26 23:29:20] -rw-r--r--. 1 boincer umatlas       100 Nov 26 08:10 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 23:29:20] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 08:10 run_atlas
[2025-11-26 23:29:20] -rw-r--r--. 1 boincer umatlas       105 Nov 26 08:10 job.xml
[2025-11-26 23:29:20] -rw-r--r--. 2 boincer umatlas 411324159 Nov 26 08:10 EVNT.47483658._003083.pool.root.1
[2025-11-26 23:29:20] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 08:10 start_atlas.sh
[2025-11-26 23:29:20] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 08:10 shared
[2025-11-26 23:29:20] -rw-r--r--. 2 boincer umatlas    590101 Nov 26 08:10 input.tar.gz
[2025-11-26 23:29:20] -rw-r--r--. 1 boincer umatlas         0 Nov 26 08:10 boinc_lockfile
[2025-11-26 23:29:20] -rw-r--r--. 1 boincer umatlas      2781 Nov 26 08:10 pandaJob.out
[2025-11-26 23:29:20] -rw-------. 1 boincer umatlas        57 Nov 26 08:10 setup.sh.local
[2025-11-26 23:29:20] -rw-------. 1 boincer umatlas    991830 Nov 26 08:11 agis_schedconf.cvmfs.json
[2025-11-26 23:29:20] drwx------. 5 boincer umatlas      4096 Nov 26 08:11 pilot3
[2025-11-26 23:29:20] -rw-r--r--. 1 boincer umatlas       533 Nov 26 23:10 boinc_task_state.xml
[2025-11-26 23:29:20] -rw-------. 1 boincer umatlas 927401001 Nov 26 23:26 HITS.47556173._000651.pool.root.1
[2025-11-26 23:29:20] -rw-------. 1 boincer umatlas      1058 Nov 26 23:27 memory_monitor_summary.json
[2025-11-26 23:29:20] -rw-------. 1 boincer umatlas   1516240 Nov 26 23:27 agis_ddmendpoints.agis.ALL.json
[2025-11-26 23:29:20] -rw-------. 1 boincer umatlas   2200219 Nov 26 23:27 log.47556173._000651.job.log.tgz.1
[2025-11-26 23:29:20] -rw-r--r--. 1 boincer umatlas      6845 Nov 26 23:28 init_data.xml
[2025-11-26 23:29:20] -rw-------. 1 boincer umatlas      8619 Nov 26 23:28 heartbeat.json
[2025-11-26 23:29:20] -rw-------. 1 boincer umatlas        95 Nov 26 23:28 pilot_heartbeat.json
[2025-11-26 23:29:20] -rw-------. 1 boincer umatlas      4823 Nov 26 23:29 pilotlog.txt
[2025-11-26 23:29:20] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 23:29 boinc_mmap_file
[2025-11-26 23:29:20] -rw-r--r--. 1 boincer umatlas        29 Nov 26 23:29 wrapper_checkpoint.txt
[2025-11-26 23:29:20] -rw-------. 1 boincer umatlas   7218892 Nov 26 23:29 log.47556173._000651.job.log.1
[2025-11-26 23:29:20] -rw-------. 1 boincer umatlas       353 Nov 26 23:29 output.list
[2025-11-26 23:29:20] -rw-r--r--. 1 boincer umatlas       620 Nov 26 23:29 runtime_log
[2025-11-26 23:29:20] -rw-------. 1 boincer umatlas   9441280 Nov 26 23:29 result.tar.gz
[2025-11-26 23:29:20] -rw-r--r--. 1 boincer umatlas      9348 Nov 26 23:29 runtime_log.err
[2025-11-26 23:29:20] -rw-------. 1 boincer umatlas       661 Nov 26 23:29 ex0MDmhC8h8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmvOMKDm5s4QSo.diag
[2025-11-26 23:29:20] -rw-r--r--. 1 boincer umatlas     21594 Nov 26 23:29 stderr.txt
[2025-11-26 23:29:20] HITS file was successfully produced:
[2025-11-26 23:29:20] -rw-------. 1 boincer umatlas 927401001 Nov 26 23:26 shared/HITS.pool.root.1
[2025-11-26 23:29:20]  *** Contents of shared directory: ***
[2025-11-26 23:29:20] total 1317176
[2025-11-26 23:29:20] -rw-r--r--. 2 boincer umatlas 411324159 Nov 26 08:10 ATLAS.root_0
[2025-11-26 23:29:20] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 08:10 start_atlas.sh
[2025-11-26 23:29:20] -rw-r--r--. 2 boincer umatlas    590101 Nov 26 08:10 input.tar.gz
[2025-11-26 23:29:20] -rw-------. 1 boincer umatlas 927401001 Nov 26 23:26 HITS.pool.root.1
[2025-11-26 23:29:20] -rw-------. 1 boincer umatlas   9441280 Nov 26 23:29 result.tar.gz
23:29:21 (769400): run_atlas exited; CPU time 245699.201176
23:29:21 (769400): called boinc_finish(0)

</stderr_txt>
]]>

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