Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
09:26:01 (312177): wrapper (7.7.26015): starting
09:26:01 (312177): wrapper: running run_atlas (--nthreads 4)
[2025-11-26 09:26:01] Arguments: --nthreads 4
[2025-11-26 09:26:01] Threads: 4
[2025-11-26 09:26:01] Checking for CVMFS
[2025-11-26 09:26:01] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 09:26:01] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 09:26:01] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 09:26:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 09:26:01] 2.13.2.0 439692 4330 58848 153328 0 81 2768976 4096001 5106 130560 0 12021589 99.884 1233218 924 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
[2025-11-26 09:26:01] CVMFS is ok
[2025-11-26 09:26:01] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 09:26:01] Small home clusters do not require a local http proxy but it is suggested if
[2025-11-26 09:26:01] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-11-26 09:26:01] Further information can be found at the LHC@home message board.
[2025-11-26 09:26:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 09:26:01] Checking for apptainer binary...
[2025-11-26 09:26:01] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 09:26:01] Running /usr/bin/apptainer --version
[2025-11-26 09:26:01] apptainer version 1.4.3
[2025-11-26 09:26:01] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 09:26:01] b650riptide
[2025-11-26 09:26:01] apptainer works
[2025-11-26 09:26:01] Set ATHENA_PROC_NUMBER=4
[2025-11-26 09:26:01] Set ATHENA_CORE_NUMBER=4
[2025-11-26 09:26:01] Starting ATLAS job with PandaID=6893879606
[2025-11-26 09:26:01] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 16:26:12]  *** The last 200 lines of the pilot log: ***
[2025-11-26 16:26:12] 2025-11-26 23:25:15,070 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-26 16:26:12] 2025-11-26 23:25:15,073 | INFO     | found 16 cores (16 cores per socket, 1 socket) HT, CPU MHz: 4622.529281249998
[2025-11-26 16:26:12] 2025-11-26 23:25:15,076 | INFO     | using path: /var/lib/boinc-client/slots/2/PanDA_Pilot-6893879606/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 16:26:12] 2025-11-26 23:25:15,076 | INFO     | extracted standard info from prmon json
[2025-11-26 16:26:12] 2025-11-26 23:25:15,076 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 16:26:12] 2025-11-26 23:25:15,076 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 16:26:12] 2025-11-26 23:25:15,079 | INFO     | fitting pss+swap vs Time
[2025-11-26 16:26:12] 2025-11-26 23:25:15,079 | INFO     | sum of square deviations: 21685403803.0
[2025-11-26 16:26:12] 2025-11-26 23:25:15,081 | INFO     | sum of deviations: 79575803021.00003
[2025-11-26 16:26:12] 2025-11-26 23:25:15,081 | INFO     | mean x: 1764186940.5
[2025-11-26 16:26:12] 2025-11-26 23:25:15,081 | INFO     | mean y: 2252747.3980582524
[2025-11-26 16:26:12] 2025-11-26 23:25:15,081 | INFO     | intersect: -6471529975.062815
[2025-11-26 16:26:12] 2025-11-26 23:25:15,081 | INFO     | chi2: 4.113843492861539
[2025-11-26 16:26:12] 2025-11-26 23:25:15,082 | INFO     | sum of square deviations: 20905426388.0
[2025-11-26 16:26:12] 2025-11-26 23:25:15,083 | INFO     | sum of deviations: 151977794555.00003
[2025-11-26 16:26:12] 2025-11-26 23:25:15,084 | INFO     | mean x: 1764186788.0
[2025-11-26 16:26:12] 2025-11-26 23:25:15,084 | INFO     | mean y: 2266835.714987715
[2025-11-26 16:26:12] 2025-11-26 23:25:15,084 | INFO     | intersect: -12822978258.411022
[2025-11-26 16:26:12] 2025-11-26 23:25:15,084 | INFO     | chi2: 1.8754919340684366
[2025-11-26 16:26:12] 2025-11-26 23:25:15,084 | INFO     | current chi2=1.8754919340684366 (change=54.41022641423173 %)
[2025-11-26 16:26:12] 2025-11-26 23:25:15,084 | INFO     | sum of square deviations: 20144379560.5
[2025-11-26 16:26:12] 2025-11-26 23:25:15,086 | INFO     | sum of deviations: 148505879331.99994
[2025-11-26 16:26:12] 2025-11-26 23:25:15,086 | INFO     | mean x: 1764186635.5
[2025-11-26 16:26:12] 2025-11-26 23:25:15,086 | INFO     | mean y: 2266139.9900497515
[2025-11-26 16:26:12] 2025-11-26 23:25:15,086 | INFO     | intersect: -13003450259.656023
[2025-11-26 16:26:12] 2025-11-26 23:25:15,086 | INFO     | chi2: 1.8757077712893853
[2025-11-26 16:26:12] 2025-11-26 23:25:15,086 | INFO     | current chi2=1.8757077712893853 (change=-0.011508299077588508 %)
[2025-11-26 16:26:12] 2025-11-26 23:25:15,086 | INFO     | right removable region: 401
[2025-11-26 16:26:12] 2025-11-26 23:25:15,086 | INFO     | sum of square deviations: 20905426388.0
[2025-11-26 16:26:12] 2025-11-26 23:25:15,088 | INFO     | sum of deviations: 6072605693.000038
[2025-11-26 16:26:12] 2025-11-26 23:25:15,088 | INFO     | mean x: 1764187093.0
[2025-11-26 16:26:12] 2025-11-26 23:25:15,088 | INFO     | mean y: 2267061.063882064
[2025-11-26 16:26:12] 2025-11-26 23:25:15,088 | INFO     | intersect: -510193789.32176316
[2025-11-26 16:26:12] 2025-11-26 23:25:15,089 | INFO     | chi2: 2.3082860104052774
[2025-11-26 16:26:12] 2025-11-26 23:25:15,089 | INFO     | current chi2=2.3082860104052774 (change=43.88979516574506 %)
[2025-11-26 16:26:12] 2025-11-26 23:25:15,089 | INFO     | sum of square deviations: 20144379560.5
[2025-11-26 16:26:12] 2025-11-26 23:25:15,091 | INFO     | sum of deviations: 4010758357.000004
[2025-11-26 16:26:12] 2025-11-26 23:25:15,091 | INFO     | mean x: 1764187245.5
[2025-11-26 16:26:12] 2025-11-26 23:25:15,091 | INFO     | mean y: 2267471.5223880596
[2025-11-26 16:26:12] 2025-11-26 23:25:15,091 | INFO     | intersect: -348983293.831356
[2025-11-26 16:26:12] 2025-11-26 23:25:15,091 | INFO     | chi2: 2.3078555932327873
[2025-11-26 16:26:12] 2025-11-26 23:25:15,091 | INFO     | current chi2=2.3078555932327873 (change=0.01864661357170674 %)
[2025-11-26 16:26:12] 2025-11-26 23:25:15,091 | INFO     | left removable region: 20
[2025-11-26 16:26:12] 2025-11-26 23:25:15,091 | INFO     | sum of square deviations: 17149456430.0
[2025-11-26 16:26:12] 2025-11-26 23:25:15,093 | INFO     | sum of deviations: 74895433695.0
[2025-11-26 16:26:12] 2025-11-26 23:25:15,093 | INFO     | mean x: 1764187215.0
[2025-11-26 16:26:12] 2025-11-26 23:25:15,093 | INFO     | mean y: 2280963.065616798
[2025-11-26 16:26:12] 2025-11-26 23:25:15,093 | INFO     | intersect: -7702311140.242185
[2025-11-26 16:26:12] 2025-11-26 23:25:15,093 | INFO     | chi2: 0.024660233465712625
[2025-11-26 16:26:12] 2025-11-26 23:25:15,093 | INFO     | current memory leak: 4.37 B/s (using 381 data points, chi2=0.02)
[2025-11-26 16:26:12] 2025-11-26 23:25:15,093 | INFO     | could have reported an average CPU frequency of 4590 MHz (17 samples)
[2025-11-26 16:26:12] 2025-11-26 23:25:15,093 | INFO     | ..............................
[2025-11-26 16:26:12] 2025-11-26 23:25:15,093 | INFO     | . Timing measurements:
[2025-11-26 16:26:12] 2025-11-26 23:25:15,093 | INFO     | . get job = 0 s
[2025-11-26 16:26:12] 2025-11-26 23:25:15,093 | INFO     | . initial setup = 18 s
[2025-11-26 16:26:12] 2025-11-26 23:25:15,093 | INFO     | . payload setup = 3 s
[2025-11-26 16:26:12] 2025-11-26 23:25:15,093 | INFO     | . stage-in = 0 s
[2025-11-26 16:26:12] 2025-11-26 23:25:15,094 | INFO     | . payload execution = 25088 s
[2025-11-26 16:26:12] 2025-11-26 23:25:15,094 | INFO     | . stage-out = 14 s
[2025-11-26 16:26:12] 2025-11-26 23:25:15,094 | INFO     | . log creation = 0 s
[2025-11-26 16:26:12] 2025-11-26 23:25:15,094 | INFO     | ..............................
[2025-11-26 16:26:12] 2025-11-26 23:25:15,201 | INFO     | 
[2025-11-26 16:26:12] 2025-11-26 23:25:15,201 | INFO     | job summary report
[2025-11-26 16:26:12] 2025-11-26 23:25:15,201 | INFO     | --------------------------------------------------
[2025-11-26 16:26:12] 2025-11-26 23:25:15,201 | INFO     | PanDA job id: 6893879606
[2025-11-26 16:26:12] 2025-11-26 23:25:15,201 | INFO     | task id: 47523449
[2025-11-26 16:26:12] 2025-11-26 23:25:15,201 | INFO     | errors: (none)
[2025-11-26 16:26:12] 2025-11-26 23:25:15,201 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 16:26:12] 2025-11-26 23:25:15,201 | INFO     | pilot state: finished 
[2025-11-26 16:26:12] 2025-11-26 23:25:15,201 | INFO     | transexitcode: 0
[2025-11-26 16:26:12] 2025-11-26 23:25:15,201 | INFO     | exeerrorcode: 0
[2025-11-26 16:26:12] 2025-11-26 23:25:15,201 | INFO     | exeerrordiag: 
[2025-11-26 16:26:12] 2025-11-26 23:25:15,201 | INFO     | exitcode: 0
[2025-11-26 16:26:12] 2025-11-26 23:25:15,201 | INFO     | exitmsg: OK
[2025-11-26 16:26:12] 2025-11-26 23:25:15,201 | INFO     | cpuconsumptiontime: 99309 s
[2025-11-26 16:26:12] 2025-11-26 23:25:15,201 | INFO     | nevents: 1000
[2025-11-26 16:26:12] 2025-11-26 23:25:15,201 | INFO     | neventsw: 0
[2025-11-26 16:26:12] 2025-11-26 23:25:15,201 | INFO     | pid: 322720
[2025-11-26 16:26:12] 2025-11-26 23:25:15,201 | INFO     | pgrp: 322720
[2025-11-26 16:26:12] 2025-11-26 23:25:15,201 | INFO     | corecount: 4
[2025-11-26 16:26:12] 2025-11-26 23:25:15,201 | INFO     | event service: False
[2025-11-26 16:26:12] 2025-11-26 23:25:15,201 | INFO     | sizes: {0: 2284270, 3: 2284532, 11: 2284560, 25096: 2321574, 25111: 2330582, 25112: 2330638, 25117: 2331076}
[2025-11-26 16:26:12] 2025-11-26 23:25:15,201 | INFO     | --------------------------------------------------
[2025-11-26 16:26:12] 2025-11-26 23:25:15,201 | INFO     | 
[2025-11-26 16:26:12] 2025-11-26 23:25:15,202 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/2
[2025-11-26 16:26:12] 2025-11-26 23:25:15,214 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 16:26:12] 2025-11-26 23:25:15,214 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 16:26:12] 2025-11-26 23:25:15,214 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 16:26:12] 2025-11-26 23:25:15,214 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 16:26:12] 2025-11-26 23:25:15,214 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 16:26:12] 2025-11-26 23:25:15,214 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 16:26:12] 2025-11-26 23:25:15,214 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 16:26:12] 2025-11-26 23:25:15,215 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 16:26:12] 2025-11-26 23:25:15,215 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 16:26:12] 2025-11-26 23:25:15,215 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 16:26:12] 2025-11-26 23:25:15,215 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 16:26:12] 2025-11-26 23:25:15,215 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 16:26:12] 2025-11-26 23:25:15,215 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 16:26:12] 2025-11-26 23:25:15,215 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 16:26:12] 2025-11-26 23:25:15,215 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 16:26:12] 2025-11-26 23:25:15,215 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 16:26:12] 2025-11-26 23:25:15,215 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 16:26:12] 2025-11-26 23:25:15,215 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 16:26:12] 2025-11-26 23:25:15,215 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 16:26:12] 2025-11-26 23:25:15,215 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 16:26:12] 2025-11-26 23:25:15,215 | INFO     | job 6893879606 has completed (purged errors)
[2025-11-26 16:26:12] 2025-11-26 23:25:15,215 | INFO     | overall cleanup function is called
[2025-11-26 16:26:12] 2025-11-26 23:25:15,761 | INFO     | PID=316035 has CPU usage=5.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-26 16:26:12] 2025-11-26 23:25:15,761 | INFO     | .. there are 7 such processes running
[2025-11-26 16:26:12] 2025-11-26 23:25:16,225 | INFO     | --- collectZombieJob: --- 10, [322720]
[2025-11-26 16:26:12] 2025-11-26 23:25:16,225 | INFO     | zombie collector waiting for pid 322720
[2025-11-26 16:26:12] 2025-11-26 23:25:16,225 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 16:26:12] 2025-11-26 23:25:16,225 | INFO     | collected zombie processes
[2025-11-26 16:26:12] 2025-11-26 23:25:16,225 | INFO     | will attempt to kill all subprocesses of pid=322720
[2025-11-26 16:26:12] 2025-11-26 23:25:16,305 | INFO     | process IDs to be killed: [322720] (in reverse order)
[2025-11-26 16:26:12] 2025-11-26 23:25:16,344 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 16:26:12] 2025-11-26 23:25:16,344 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 16:26:12] 2025-11-26 23:25:16,348 | INFO     | did not find any defunct processes belonging to 322720
[2025-11-26 16:26:12] 2025-11-26 23:25:16,350 | INFO     | did not find any defunct processes belonging to 322720
[2025-11-26 16:26:12] 2025-11-26 23:25:16,351 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 16:26:12] 2025-11-26 23:25:16,351 | INFO     | ready for new job
[2025-11-26 16:26:12] 2025-11-26 23:25:16,351 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 16:26:12] 2025-11-26 23:25:16,352 | INFO     | ***************************************
[2025-11-26 16:26:12] 2025-11-26 23:25:16,352 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 16:26:12] 2025-11-26 23:25:16,353 | INFO     | ***************************************
[2025-11-26 16:26:12] 2025-11-26 23:25:16,353 | INFO     | 
[2025-11-26 16:26:12] 2025-11-26 23:25:16,353 | INFO     | architecture information:
[2025-11-26 16:26:12] 2025-11-26 23:25:16,354 | INFO     | executing command: cat /etc/os-release
[2025-11-26 16:26:12] 2025-11-26 23:25:16,364 | INFO     | cat /etc/os-release:
[2025-11-26 16:26:12] NAME="CentOS Linux"
[2025-11-26 16:26:12] VERSION="7 (Core)"
[2025-11-26 16:26:12] ID="centos"
[2025-11-26 16:26:12] ID_LIKE="rhel fedora"
[2025-11-26 16:26:12] VERSION_ID="7"
[2025-11-26 16:26:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 16:26:12] ANSI_COLOR="0;31"
[2025-11-26 16:26:12] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 16:26:12] HOME_URL="https://www.centos.org/"
[2025-11-26 16:26:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 16:26:12] 
[2025-11-26 16:26:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 16:26:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 16:26:12] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 16:26:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 16:26:12] 
[2025-11-26 16:26:12] 2025-11-26 23:25:16,365 | INFO     | ***************************************
[2025-11-26 16:26:12] 2025-11-26 23:25:16,867 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/2
[2025-11-26 16:26:12] 2025-11-26 23:25:16,877 | INFO     | sufficient remaining disk space (238643314688 B)
[2025-11-26 16:26:12] 2025-11-26 23:25:16,877 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 16:26:12] 2025-11-26 23:25:16,877 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 16:26:12] 2025-11-26 23:25:16,877 | INFO     | update_server=False
[2025-11-26 16:26:12] 2025-11-26 23:25:16,878 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 16:26:12] 2025-11-26 23:25:16,878 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 16:26:12] 2025-11-26 23:25:16,878 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 16:26:12] 2025-11-26 23:25:17,113 | INFO     | all data control threads have been joined
[2025-11-26 16:26:12] 2025-11-26 23:25:17,234 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 16:26:12] 2025-11-26 23:25:17,234 | INFO     | aborting loop
[2025-11-26 16:26:12] 2025-11-26 23:25:17,572 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 16:26:12] 2025-11-26 23:25:17,883 | INFO     | [job] retrieve thread has finished
[2025-11-26 16:26:12] 2025-11-26 23:25:17,883 | INFO     | [job] queue monitor thread has finished
[2025-11-26 16:26:12] 2025-11-26 23:25:17,913 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 16:26:12] 2025-11-26 23:25:18,053 | INFO     | all job control threads have been joined
[2025-11-26 16:26:12] 2025-11-26 23:25:18,117 | INFO     | [data] control thread has finished
[2025-11-26 16:26:12] 2025-11-26 23:25:18,191 | INFO     | all payload control threads have been joined
[2025-11-26 16:26:12] 2025-11-26 23:25:18,239 | INFO     | [job] job monitor thread has finished
[2025-11-26 16:26:12] 2025-11-26 23:25:18,330 | INFO     | [payload] failed_post thread has finished
[2025-11-26 16:26:12] 2025-11-26 23:25:18,798 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 16:26:12] 2025-11-26 23:25:18,845 | INFO     | [payload] validate_post thread has finished
[2025-11-26 16:26:12] 2025-11-26 23:25:18,900 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 16:26:12] 2025-11-26 23:25:19,035 | INFO     | [data] copytool_in thread has finished
[2025-11-26 16:26:12] 2025-11-26 23:25:19,056 | INFO     | [job] control thread has finished
[2025-11-26 16:26:12] 2025-11-26 23:25:19,077 | INFO     | [job] validate thread has finished
[2025-11-26 16:26:12] 2025-11-26 23:25:19,192 | INFO     | [payload] control thread has finished
[2025-11-26 16:26:12] 2025-11-26 23:25:19,263 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 16:26:12] 2025-11-26 23:25:19,577 | INFO     | [data] copytool_out thread has finished
[2025-11-26 16:26:12] 2025-11-26 23:25:20,883 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 16:26:12] 2025-11-26 23:25:47,921 | INFO     | PID=316035 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-26 16:26:12] 2025-11-26 23:25:47,921 | INFO     | .. there are 7 such processes running
[2025-11-26 16:26:12] 2025-11-26 23:25:47,921 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 16:26:12] 2025-11-26 23:25:47,921 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 16:26:12] 2025-11-26 23:25:47,921 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 16:26:12] 2025-11-26 23:26:05,186 | INFO     | [monitor] cgroup control has ended
[2025-11-26 16:26:12] 2025-11-26 23:26:06,179 [wrapper] supervise_pilot (15 min periods counter: 29)
[2025-11-26 16:26:12] 2025-11-26 23:26:07,235 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 124523973760832)>', '<ExcThread(monitor, started 124523483477760)>']
[2025-11-26 16:26:12] 2025-11-26 23:26:08,009 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 16:26:12] 2025-11-26 23:26:08,009 | INFO     | [monitor] control thread has ended
[2025-11-26 16:26:12] 2025-11-26 23:26:12,260 | INFO     | all workflow threads have been joined
[2025-11-26 16:26:12] 2025-11-26 23:26:12,260 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 16:26:12] 2025-11-26 23:26:12,260 | INFO     | traces error code: 0
[2025-11-26 16:26:12] 2025-11-26 23:26:12,261 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 16:26:12] 2025-11-26 23:26:12,311 [wrapper] ==== pilot stdout END ====
[2025-11-26 16:26:12] 2025-11-26 23:26:12,313 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 16:26:12] 2025-11-26 23:26:12,315 [wrapper] pilotpid: 316035
[2025-11-26 16:26:12] 2025-11-26 23:26:12,316 [wrapper] Pilot exit status: 0
[2025-11-26 16:26:12] 2025-11-26 23:26:12,322 [wrapper] pandaids: 6893879606
[2025-11-26 16:26:12] 2025-11-26 23:26:12,346 [wrapper] cleanup supervisor_pilot  709587 316036
[2025-11-26 16:26:12] 2025-11-26 23:26:12,348 [wrapper] Test setup, not cleaning
[2025-11-26 16:26:12] 2025-11-26 23:26:12,349 [wrapper] apfmon messages muted
[2025-11-26 16:26:12] 2025-11-26 23:26:12,351 [wrapper] ==== wrapper stdout END ====
[2025-11-26 16:26:12] 2025-11-26 23:26:12,353 [wrapper] ==== wrapper stderr END ====
[2025-11-26 16:26:12]  *** Error codes and diagnostics ***
[2025-11-26 16:26:12]     "exeErrorCode": 0,
[2025-11-26 16:26:12]     "exeErrorDiag": "",
[2025-11-26 16:26:12]     "pilotErrorCode": 0,
[2025-11-26 16:26:12]     "pilotErrorDiag": "",
[2025-11-26 16:26:12]  *** Listing of results directory ***
[2025-11-26 16:26:12] total 1309428
[2025-11-26 16:26:12] -rw-r--r-- 1 boinc boinc      5112 Nov 20 12:10 queuedata.json
[2025-11-26 16:26:12] -rw-r--r-- 1 boinc boinc    576529 Nov 20 12:10 pilot3.tar.gz
[2025-11-26 16:26:12] -rwx------ 1 boinc boinc     36292 Nov 20 12:13 runpilot2-wrapper.sh
[2025-11-26 16:26:12] -rw-r--r-- 1 boinc boinc       100 Nov 26 09:26 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 16:26:12] -rwxr-xr-x 1 boinc boinc      7986 Nov 26 09:26 run_atlas
[2025-11-26 16:26:12] -rw-r--r-- 1 boinc boinc       105 Nov 26 09:26 job.xml
[2025-11-26 16:26:12] -rw-r--r-- 1 boinc boinc      9985 Nov 26 09:26 init_data.xml
[2025-11-26 16:26:12] -rw-r--r-- 2 boinc boinc 408381458 Nov 26 09:26 EVNT.47493127._000820.pool.root.1
[2025-11-26 16:26:12] -rw-r--r-- 2 boinc boinc     15847 Nov 26 09:26 start_atlas.sh
[2025-11-26 16:26:12] drwxrwx--x 2 boinc boinc      4096 Nov 26 09:26 shared
[2025-11-26 16:26:12] -rw-r--r-- 2 boinc boinc    590100 Nov 26 09:26 input.tar.gz
[2025-11-26 16:26:12] -rw-r--r-- 1 boinc boinc         0 Nov 26 09:26 boinc_lockfile
[2025-11-26 16:26:12] -rw-r--r-- 1 boinc boinc      2784 Nov 26 09:26 pandaJob.out
[2025-11-26 16:26:12] -rw------- 1 boinc boinc    991545 Nov 26 09:26 agis_schedconf.cvmfs.json
[2025-11-26 16:26:12] drwx------ 5 boinc boinc      4096 Nov 26 09:26 pilot3
[2025-11-26 16:26:12] -rw-r--r-- 1 boinc boinc       531 Nov 26 16:21 boinc_task_state.xml
[2025-11-26 16:26:12] -rw------- 1 boinc boinc 918768111 Nov 26 16:24 HITS.47523449._008198.pool.root.1
[2025-11-26 16:26:12] -rw------- 1 boinc boinc      1028 Nov 26 16:24 memory_monitor_summary.json
[2025-11-26 16:26:12] -rw------- 1 boinc boinc   1516240 Nov 26 16:25 agis_ddmendpoints.agis.ALL.json
[2025-11-26 16:26:12] -rw------- 1 boinc boinc   1257201 Nov 26 16:25 log.47523449._008198.job.log.tgz.1
[2025-11-26 16:26:12] -rw------- 1 boinc boinc        95 Nov 26 16:25 pilot_heartbeat.json
[2025-11-26 16:26:12] -rw------- 1 boinc boinc      8547 Nov 26 16:25 heartbeat.json
[2025-11-26 16:26:12] -rw-r--r-- 1 boinc boinc      8192 Nov 26 16:26 boinc_mmap_file
[2025-11-26 16:26:12] -rw-r--r-- 1 boinc boinc        28 Nov 26 16:26 wrapper_checkpoint.txt
[2025-11-26 16:26:12] -rw------- 1 boinc boinc      4830 Nov 26 16:26 pilotlog.txt
[2025-11-26 16:26:12] -rw------- 1 boinc boinc   3635238 Nov 26 16:26 log.47523449._008198.job.log.1
[2025-11-26 16:26:12] -rw------- 1 boinc boinc       353 Nov 26 16:26 output.list
[2025-11-26 16:26:12] -rw-r--r-- 1 boinc boinc       620 Nov 26 16:26 runtime_log
[2025-11-26 16:26:12] -rw------- 1 boinc boinc   4915200 Nov 26 16:26 result.tar.gz
[2025-11-26 16:26:12] -rw-r--r-- 1 boinc boinc      8940 Nov 26 16:26 runtime_log.err
[2025-11-26 16:26:12] -rw------- 1 boinc boinc       664 Nov 26 16:26 LIjMDmNHPg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmdzGKDm7S9rbn.diag
[2025-11-26 16:26:12] -rw-r--r-- 1 boinc boinc     21381 Nov 26 16:26 stderr.txt
[2025-11-26 16:26:12] HITS file was successfully produced:
[2025-11-26 16:26:12] -rw------- 1 boinc boinc 918768111 Nov 26 16:24 shared/HITS.pool.root.1
[2025-11-26 16:26:12]  *** Contents of shared directory: ***
[2025-11-26 16:26:12] total 1301448
[2025-11-26 16:26:12] -rw-r--r-- 2 boinc boinc 408381458 Nov 26 09:26 ATLAS.root_0
[2025-11-26 16:26:12] -rw-r--r-- 2 boinc boinc     15847 Nov 26 09:26 start_atlas.sh
[2025-11-26 16:26:12] -rw-r--r-- 2 boinc boinc    590100 Nov 26 09:26 input.tar.gz
[2025-11-26 16:26:12] -rw------- 1 boinc boinc 918768111 Nov 26 16:24 HITS.pool.root.1
[2025-11-26 16:26:12] -rw------- 1 boinc boinc   4915200 Nov 26 16:26 result.tar.gz
16:26:13 (312177): run_atlas exited; CPU time 99324.977289
16:26:13 (312177): called boinc_finish(0)

</stderr_txt>
]]>

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