Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
07:25:24 (25247): wrapper (7.7.26015): starting
07:25:24 (25247): wrapper: running run_atlas (--nthreads 12)
[2025-11-26 07:25:24] Arguments: --nthreads 12
[2025-11-26 07:25:24] Threads: 12
[2025-11-26 07:25:24] Checking for CVMFS
[2025-11-26 07:25:24] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 07:25:24] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 07:25:24] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 07:25:24] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 07:25:24] 2.11.2.0 2987 287633 94096 153322 0 81 17838114 20275200 1 130560 1 129134317 99.967 17061675 14089 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-26 07:25:24] CVMFS is ok
[2025-11-26 07:25:24] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 07:25:24] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 07:25:24] Further information can be found at the LHC@home message board.
[2025-11-26 07:25:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 07:25:24] Checking for apptainer binary...
[2025-11-26 07:25:24] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 07:25:24] Running /usr/bin/apptainer --version
[2025-11-26 07:25:24] apptainer version 1.3.2-1.el7
[2025-11-26 07:25:24] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 07:25:26] c-205-19.aglt2.org
[2025-11-26 07:25:26] apptainer works
[2025-11-26 07:25:26] Set ATHENA_PROC_NUMBER=12
[2025-11-26 07:25:26] Set ATHENA_CORE_NUMBER=12
[2025-11-26 07:25:26] Starting ATLAS job with PandaID=6896990103
[2025-11-26 07:25:26] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 14:42:43]  *** The last 200 lines of the pilot log: ***
[2025-11-26 14:42:43] 2025-11-26 19:42:09,900 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 14:42:43] 2025-11-26 19:42:09,966 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-26 14:42:43] 2025-11-26 19:42:09,970 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1751.25
[2025-11-26 14:42:43] 2025-11-26 19:42:09,973 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6896990103/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 14:42:43] 2025-11-26 19:42:09,974 | INFO     | extracted standard info from prmon json
[2025-11-26 14:42:43] 2025-11-26 19:42:09,974 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 14:42:43] 2025-11-26 19:42:09,974 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 14:42:43] 2025-11-26 19:42:09,982 | INFO     | fitting pss+swap vs Time
[2025-11-26 14:42:43] 2025-11-26 19:42:09,983 | INFO     | sum of square deviations: 24482155365.748184
[2025-11-26 14:42:43] 2025-11-26 19:42:09,986 | INFO     | sum of deviations: 326663963751.7764
[2025-11-26 14:42:43] 2025-11-26 19:42:09,987 | INFO     | mean x: 1764173025.2377622
[2025-11-26 14:42:43] 2025-11-26 19:42:09,987 | INFO     | mean y: 3431968.4335664334
[2025-11-26 14:42:43] 2025-11-26 19:42:09,987 | INFO     | intersect: -23535825280.721565
[2025-11-26 14:42:43] 2025-11-26 19:42:09,987 | INFO     | chi2: 6.021854163016947
[2025-11-26 14:42:43] 2025-11-26 19:42:09,988 | INFO     | sum of square deviations: 23636105495.46218
[2025-11-26 14:42:43] 2025-11-26 19:42:09,992 | INFO     | sum of deviations: 479058871890.05176
[2025-11-26 14:42:43] 2025-11-26 19:42:09,992 | INFO     | mean x: 1764172872.740566
[2025-11-26 14:42:43] 2025-11-26 19:42:09,992 | INFO     | mean y: 3459411.2004716983
[2025-11-26 14:42:43] 2025-11-26 19:42:09,992 | INFO     | intersect: -35752966976.23394
[2025-11-26 14:42:43] 2025-11-26 19:42:09,993 | INFO     | chi2: 3.4226625808557882
[2025-11-26 14:42:43] 2025-11-26 19:42:09,993 | INFO     | current chi2=3.4226625808557882 (change=43.16264578647591 %)
[2025-11-26 14:42:43] 2025-11-26 19:42:09,993 | INFO     | sum of square deviations: 22809776925.169388
[2025-11-26 14:42:43] 2025-11-26 19:42:09,997 | INFO     | sum of deviations: 550754600115.7236
[2025-11-26 14:42:43] 2025-11-26 19:42:09,997 | INFO     | mean x: 1764172720.2434368
[2025-11-26 14:42:43] 2025-11-26 19:42:09,997 | INFO     | mean y: 3472597.0811455846
[2025-11-26 14:42:43] 2025-11-26 19:42:09,997 | INFO     | intersect: -42593447322.84161
[2025-11-26 14:42:43] 2025-11-26 19:42:09,998 | INFO     | chi2: 2.615286439081897
[2025-11-26 14:42:43] 2025-11-26 19:42:09,998 | INFO     | current chi2=2.615286439081897 (change=23.589124627412687 %)
[2025-11-26 14:42:43] 2025-11-26 19:42:09,998 | INFO     | right removable region: 418
[2025-11-26 14:42:43] 2025-11-26 19:42:09,999 | INFO     | sum of square deviations: 23636043275.46218
[2025-11-26 14:42:43] 2025-11-26 19:42:10,003 | INFO     | sum of deviations: 179033333971.7733
[2025-11-26 14:42:43] 2025-11-26 19:42:10,003 | INFO     | mean x: 1764173177.740566
[2025-11-26 14:42:43] 2025-11-26 19:42:10,003 | INFO     | mean y: 3458504.4433962265
[2025-11-26 14:42:43] 2025-11-26 19:42:10,003 | INFO     | intersect: -13359429777.385376
[2025-11-26 14:42:43] 2025-11-26 19:42:10,004 | INFO     | chi2: 3.548114815331008
[2025-11-26 14:42:43] 2025-11-26 19:42:10,004 | INFO     | current chi2=3.548114815331008 (change=41.07936327781469 %)
[2025-11-26 14:42:43] 2025-11-26 19:42:10,004 | INFO     | sum of square deviations: 22809652485.169388
[2025-11-26 14:42:43] 2025-11-26 19:42:10,008 | INFO     | sum of deviations: 146097571161.4652
[2025-11-26 14:42:43] 2025-11-26 19:42:10,008 | INFO     | mean x: 1764173330.2434368
[2025-11-26 14:42:43] 2025-11-26 19:42:10,008 | INFO     | mean y: 3464576.260143198
[2025-11-26 14:42:43] 2025-11-26 19:42:10,008 | INFO     | intersect: -11296200722.191051
[2025-11-26 14:42:43] 2025-11-26 19:42:10,009 | INFO     | chi2: 3.4856292521188346
[2025-11-26 14:42:43] 2025-11-26 19:42:10,009 | INFO     | current chi2=3.4856292521188346 (change=1.7610919168167931 %)
[2025-11-26 14:42:43] 2025-11-26 19:42:10,009 | INFO     | left removable region: 20
[2025-11-26 14:42:43] 2025-11-26 19:42:10,010 | INFO     | sum of square deviations: 19549131264.874363
[2025-11-26 14:42:43] 2025-11-26 19:42:10,013 | INFO     | sum of deviations: 328455042221.75885
[2025-11-26 14:42:43] 2025-11-26 19:42:10,013 | INFO     | mean x: 1764173299.7487438
[2025-11-26 14:42:43] 2025-11-26 19:42:10,013 | INFO     | mean y: 3514115.5175879397
[2025-11-26 14:42:43] 2025-11-26 19:42:10,013 | INFO     | intersect: -29637271851.10103
[2025-11-26 14:42:43] 2025-11-26 19:42:10,014 | INFO     | chi2: 0.026104678068818665
[2025-11-26 14:42:43] 2025-11-26 19:42:10,014 | INFO     | current memory leak: 16.80 B/s (using 398 data points, chi2=0.03)
[2025-11-26 14:42:43] 2025-11-26 19:42:10,014 | INFO     | could have reported an average CPU frequency of 2384 MHz (18 samples)
[2025-11-26 14:42:43] 2025-11-26 19:42:10,014 | INFO     | ..............................
[2025-11-26 14:42:43] 2025-11-26 19:42:10,015 | INFO     | . Timing measurements:
[2025-11-26 14:42:43] 2025-11-26 19:42:10,015 | INFO     | . get job = 0 s
[2025-11-26 14:42:43] 2025-11-26 19:42:10,015 | INFO     | . initial setup = 2 s
[2025-11-26 14:42:43] 2025-11-26 19:42:10,015 | INFO     | . payload setup = 7 s
[2025-11-26 14:42:43] 2025-11-26 19:42:10,015 | INFO     | . stage-in = 0 s
[2025-11-26 14:42:43] 2025-11-26 19:42:10,015 | INFO     | . payload execution = 26149 s
[2025-11-26 14:42:43] 2025-11-26 19:42:10,015 | INFO     | . stage-out = 3 s
[2025-11-26 14:42:43] 2025-11-26 19:42:10,015 | INFO     | . log creation = 0 s
[2025-11-26 14:42:43] 2025-11-26 19:42:10,015 | INFO     | ..............................
[2025-11-26 14:42:43] 2025-11-26 19:42:10,272 | INFO     | 
[2025-11-26 14:42:43] 2025-11-26 19:42:10,272 | INFO     | job summary report
[2025-11-26 14:42:43] 2025-11-26 19:42:10,272 | INFO     | --------------------------------------------------
[2025-11-26 14:42:43] 2025-11-26 19:42:10,272 | INFO     | PanDA job id: 6896990103
[2025-11-26 14:42:43] 2025-11-26 19:42:10,272 | INFO     | task id: 47556161
[2025-11-26 14:42:43] 2025-11-26 19:42:10,273 | INFO     | errors: (none)
[2025-11-26 14:42:43] 2025-11-26 19:42:10,273 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 14:42:43] 2025-11-26 19:42:10,273 | INFO     | pilot state: finished 
[2025-11-26 14:42:43] 2025-11-26 19:42:10,273 | INFO     | transexitcode: 0
[2025-11-26 14:42:43] 2025-11-26 19:42:10,273 | INFO     | exeerrorcode: 0
[2025-11-26 14:42:43] 2025-11-26 19:42:10,273 | INFO     | exeerrordiag: 
[2025-11-26 14:42:43] 2025-11-26 19:42:10,274 | INFO     | exitcode: 0
[2025-11-26 14:42:43] 2025-11-26 19:42:10,274 | INFO     | exitmsg: OK
[2025-11-26 14:42:43] 2025-11-26 19:42:10,274 | INFO     | cpuconsumptiontime: 299649 s
[2025-11-26 14:42:43] 2025-11-26 19:42:10,274 | INFO     | nevents: 1000
[2025-11-26 14:42:43] 2025-11-26 19:42:10,274 | INFO     | neventsw: 0
[2025-11-26 14:42:43] 2025-11-26 19:42:10,274 | INFO     | pid: 3074
[2025-11-26 14:42:43] 2025-11-26 19:42:10,275 | INFO     | pgrp: 3074
[2025-11-26 14:42:43] 2025-11-26 19:42:10,275 | INFO     | corecount: 12
[2025-11-26 14:42:43] 2025-11-26 19:42:10,275 | INFO     | event service: False
[2025-11-26 14:42:43] 2025-11-26 19:42:10,275 | INFO     | sizes: {0: 2284264, 5: 2284526, 11: 2284582, 26160: 2321959, 26161: 2321958, 26164: 2331008, 26165: 2331192, 26172: 2331438}
[2025-11-26 14:42:43] 2025-11-26 19:42:10,275 | INFO     | --------------------------------------------------
[2025-11-26 14:42:43] 2025-11-26 19:42:10,275 | INFO     | 
[2025-11-26 14:42:43] 2025-11-26 19:42:10,276 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-26 14:42:43] 2025-11-26 19:42:10,300 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 14:42:43] 2025-11-26 19:42:10,300 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 14:42:43] 2025-11-26 19:42:10,301 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 14:42:43] 2025-11-26 19:42:10,301 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 14:42:43] 2025-11-26 19:42:10,301 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 14:42:43] 2025-11-26 19:42:10,301 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 14:42:43] 2025-11-26 19:42:10,301 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 14:42:43] 2025-11-26 19:42:10,301 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 14:42:43] 2025-11-26 19:42:10,302 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 14:42:43] 2025-11-26 19:42:10,302 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 14:42:43] 2025-11-26 19:42:10,302 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 14:42:43] 2025-11-26 19:42:10,302 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 14:42:43] 2025-11-26 19:42:10,302 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 14:42:43] 2025-11-26 19:42:10,302 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 14:42:43] 2025-11-26 19:42:10,303 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 14:42:43] 2025-11-26 19:42:10,303 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 14:42:43] 2025-11-26 19:42:10,303 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 14:42:43] 2025-11-26 19:42:10,303 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 14:42:43] 2025-11-26 19:42:10,303 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 14:42:43] 2025-11-26 19:42:10,303 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 14:42:43] 2025-11-26 19:42:10,304 | INFO     | job 6896990103 has completed (purged errors)
[2025-11-26 14:42:43] 2025-11-26 19:42:10,304 | INFO     | overall cleanup function is called
[2025-11-26 14:42:43] 2025-11-26 19:42:11,319 | INFO     | --- collectZombieJob: --- 10, [3074]
[2025-11-26 14:42:43] 2025-11-26 19:42:11,319 | INFO     | zombie collector waiting for pid 3074
[2025-11-26 14:42:43] 2025-11-26 19:42:11,319 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 14:42:43] 2025-11-26 19:42:11,319 | INFO     | collected zombie processes
[2025-11-26 14:42:43] 2025-11-26 19:42:11,319 | INFO     | will attempt to kill all subprocesses of pid=3074
[2025-11-26 14:42:43] 2025-11-26 19:42:11,413 | INFO     | process IDs to be killed: [3074] (in reverse order)
[2025-11-26 14:42:43] 2025-11-26 19:42:11,466 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 14:42:43] 2025-11-26 19:42:11,466 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 14:42:43] 2025-11-26 19:42:11,470 | INFO     | did not find any defunct processes belonging to 3074
[2025-11-26 14:42:43] 2025-11-26 19:42:11,473 | INFO     | did not find any defunct processes belonging to 3074
[2025-11-26 14:42:43] 2025-11-26 19:42:11,475 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 14:42:43] 2025-11-26 19:42:11,475 | INFO     | ready for new job
[2025-11-26 14:42:43] 2025-11-26 19:42:11,475 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 14:42:43] 2025-11-26 19:42:11,478 | INFO     | ***************************************
[2025-11-26 14:42:43] 2025-11-26 19:42:11,478 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 14:42:43] 2025-11-26 19:42:11,478 | INFO     | ***************************************
[2025-11-26 14:42:43] 2025-11-26 19:42:11,478 | INFO     | 
[2025-11-26 14:42:43] 2025-11-26 19:42:11,479 | INFO     | architecture information:
[2025-11-26 14:42:43] 2025-11-26 19:42:11,480 | INFO     | executing command: cat /etc/os-release
[2025-11-26 14:42:43] 2025-11-26 19:42:11,494 | INFO     | cat /etc/os-release:
[2025-11-26 14:42:43] NAME="CentOS Linux"
[2025-11-26 14:42:43] VERSION="7 (Core)"
[2025-11-26 14:42:43] ID="centos"
[2025-11-26 14:42:43] ID_LIKE="rhel fedora"
[2025-11-26 14:42:43] VERSION_ID="7"
[2025-11-26 14:42:43] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 14:42:43] ANSI_COLOR="0;31"
[2025-11-26 14:42:43] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 14:42:43] HOME_URL="https://www.centos.org/"
[2025-11-26 14:42:43] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 14:42:43] 
[2025-11-26 14:42:43] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 14:42:43] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 14:42:43] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 14:42:43] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 14:42:43] 
[2025-11-26 14:42:43] 2025-11-26 19:42:11,495 | INFO     | ***************************************
[2025-11-26 14:42:43] 2025-11-26 19:42:11,998 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-26 14:42:43] 2025-11-26 19:42:12,074 | INFO     | sufficient remaining disk space (28247588864 B)
[2025-11-26 14:42:43] 2025-11-26 19:42:12,074 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 14:42:43] 2025-11-26 19:42:12,074 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 14:42:43] 2025-11-26 19:42:12,074 | INFO     | update_server=False
[2025-11-26 14:42:43] 2025-11-26 19:42:12,075 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 14:42:43] 2025-11-26 19:42:12,075 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 14:42:43] 2025-11-26 19:42:12,407 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-26 14:42:43] 2025-11-26 19:42:12,407 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-26 14:42:43] 2025-11-26 19:42:12,407 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 14:42:43] 2025-11-26 19:42:12,407 | INFO     | will abort loop
[2025-11-26 14:42:43] 2025-11-26 19:42:12,598 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 14:42:43] 2025-11-26 19:42:13,075 | INFO     | all data control threads have been joined
[2025-11-26 14:42:43] 2025-11-26 19:42:13,077 | INFO     | [job] retrieve thread has finished
[2025-11-26 14:42:43] 2025-11-26 19:42:13,081 | INFO     | [job] queue monitor thread has finished
[2025-11-26 14:42:43] 2025-11-26 19:42:13,119 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 14:42:43] 2025-11-26 19:42:13,141 | INFO     | all payload control threads have been joined
[2025-11-26 14:42:43] 2025-11-26 19:42:13,147 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 14:42:43] 2025-11-26 19:42:13,344 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 14:42:43] 2025-11-26 19:42:13,408 | INFO     | [job] job monitor thread has finished
[2025-11-26 14:42:43] 2025-11-26 19:42:13,459 | INFO     | [payload] failed_post thread has finished
[2025-11-26 14:42:43] 2025-11-26 19:42:13,653 | INFO     | all job control threads have been joined
[2025-11-26 14:42:43] 2025-11-26 19:42:14,081 | INFO     | [data] control thread has finished
[2025-11-26 14:42:43] 2025-11-26 19:42:14,111 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 14:42:43] 2025-11-26 19:42:14,124 | INFO     | [payload] validate_post thread has finished
[2025-11-26 14:42:43] 2025-11-26 19:42:14,147 | INFO     | [payload] control thread has finished
[2025-11-26 14:42:43] 2025-11-26 19:42:14,335 | INFO     | [job] validate thread has finished
[2025-11-26 14:42:43] 2025-11-26 19:42:14,435 | INFO     | [data] copytool_in thread has finished
[2025-11-26 14:42:43] 2025-11-26 19:42:14,599 | INFO     | [data] copytool_out thread has finished
[2025-11-26 14:42:43] 2025-11-26 19:42:14,658 | INFO     | [job] control thread has finished
[2025-11-26 14:42:43] 2025-11-26 19:42:17,153 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 14:42:43] 2025-11-26 19:42:22,733 | INFO     | job.realtimelogging is not enabled
[2025-11-26 14:42:43] 2025-11-26 19:42:23,701 | INFO     | [monitor] cgroup control has ended
[2025-11-26 14:42:43] 2025-11-26 19:42:23,738 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 14:42:43] 2025-11-26 19:42:24,817 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139980825872192)>', '<ExcThread(monitor, started 139980156430080)>']
[2025-11-26 14:42:43] 2025-11-26 19:42:29,828 | INFO     | all workflow threads have been joined
[2025-11-26 14:42:43] 2025-11-26 19:42:29,828 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 14:42:43] 2025-11-26 19:42:29,828 | INFO     | traces error code: 0
[2025-11-26 14:42:43] 2025-11-26 19:42:29,829 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 14:42:43] 2025-11-26 19:42:42,943 | INFO     | PID=28918 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-26 14:42:43] 2025-11-26 19:42:42,943 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 14:42:43] 2025-11-26 19:42:42,943 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 14:42:43] 2025-11-26 19:42:42,943 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 14:42:43] 2025-11-26 19:42:42,943 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 14:42:43] 2025-11-26 19:42:42,943 | INFO     | [monitor] control thread has ended
[2025-11-26 14:42:43] 2025-11-26 19:42:43,034 [wrapper] ==== pilot stdout END ====
[2025-11-26 14:42:43] 2025-11-26 19:42:43,038 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 14:42:43] 2025-11-26 19:42:43,042 [wrapper] pilotpid: 28918
[2025-11-26 14:42:43] 2025-11-26 19:42:43,046 [wrapper] Pilot exit status: 0
[2025-11-26 14:42:43] 2025-11-26 19:42:43,060 [wrapper] pandaids: 6896990103
[2025-11-26 14:42:43] 2025-11-26 19:42:43,099 [wrapper] cleanup supervisor_pilot 13689 28919
[2025-11-26 14:42:43] 2025-11-26 19:42:43,103 [wrapper] Test setup, not cleaning
[2025-11-26 14:42:43] 2025-11-26 19:42:43,107 [wrapper] apfmon messages muted
[2025-11-26 14:42:43] 2025-11-26 19:42:43,111 [wrapper] ==== wrapper stdout END ====
[2025-11-26 14:42:43] 2025-11-26 19:42:43,115 [wrapper] ==== wrapper stderr END ====
[2025-11-26 14:42:43]  *** Error codes and diagnostics ***
[2025-11-26 14:42:43]     "exeErrorCode": 0,
[2025-11-26 14:42:43]     "exeErrorDiag": "",
[2025-11-26 14:42:43]     "pilotErrorCode": 0,
[2025-11-26 14:42:43]     "pilotErrorDiag": "",
[2025-11-26 14:42:43]  *** Listing of results directory ***
[2025-11-26 14:42:43] total 1311388
[2025-11-26 14:42:43] -rw-r--r-- 1 boincer umatlas    576529 Nov 25 07:49 pilot3.tar.gz
[2025-11-26 14:42:43] -rwx------ 1 boincer umatlas     36292 Nov 25 08:24 runpilot2-wrapper.sh
[2025-11-26 14:42:43] -rw-r--r-- 1 boincer umatlas      5112 Nov 25 08:24 queuedata.json
[2025-11-26 14:42:43] -rw-r--r-- 1 boincer umatlas       100 Nov 26 07:25 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 14:42:43] -rwxr-xr-x 1 boincer umatlas      7986 Nov 26 07:25 run_atlas
[2025-11-26 14:42:43] -rw-r--r-- 1 boincer umatlas       105 Nov 26 07:25 job.xml
[2025-11-26 14:42:43] -rw-r--r-- 2 boincer umatlas 410611040 Nov 26 07:25 EVNT.47483658._002171.pool.root.1
[2025-11-26 14:42:43] -rw-r--r-- 2 boincer umatlas     15847 Nov 26 07:25 start_atlas.sh
[2025-11-26 14:42:43] drwxrwx--x 2 boincer umatlas      4096 Nov 26 07:25 shared
[2025-11-26 14:42:43] -rw-r--r-- 2 boincer umatlas    590103 Nov 26 07:25 input.tar.gz
[2025-11-26 14:42:43] -rw-r--r-- 1 boincer umatlas         0 Nov 26 07:25 boinc_lockfile
[2025-11-26 14:42:43] -rw-r--r-- 1 boincer umatlas      2785 Nov 26 07:25 pandaJob.out
[2025-11-26 14:42:43] -rw------- 1 boincer umatlas        57 Nov 26 07:25 setup.sh.local
[2025-11-26 14:42:43] -rw------- 1 boincer umatlas    991830 Nov 26 07:25 agis_schedconf.cvmfs.json
[2025-11-26 14:42:43] drwx------ 5 boincer umatlas      4096 Nov 26 07:25 pilot3
[2025-11-26 14:42:43] -rw-r--r-- 1 boincer umatlas       533 Nov 26 14:31 boinc_task_state.xml
[2025-11-26 14:42:43] -rw-r--r-- 1 boincer umatlas      5956 Nov 26 14:37 init_data.xml
[2025-11-26 14:42:43] -rw------- 1 boincer umatlas 916641166 Nov 26 14:41 HITS.47556161._001543.pool.root.1
[2025-11-26 14:42:43] -rw------- 1 boincer umatlas        95 Nov 26 14:41 pilot_heartbeat.json
[2025-11-26 14:42:43] -rw------- 1 boincer umatlas      1061 Nov 26 14:41 memory_monitor_summary.json
[2025-11-26 14:42:43] -rw------- 1 boincer umatlas   1516240 Nov 26 14:42 agis_ddmendpoints.agis.ALL.json
[2025-11-26 14:42:43] -rw------- 1 boincer umatlas   2186396 Nov 26 14:42 log.47556161._001543.job.log.tgz.1
[2025-11-26 14:42:43] -rw------- 1 boincer umatlas      8667 Nov 26 14:42 heartbeat.json
[2025-11-26 14:42:43] -rw-r--r-- 1 boincer umatlas        29 Nov 26 14:42 wrapper_checkpoint.txt
[2025-11-26 14:42:43] -rw-r--r-- 1 boincer umatlas      8192 Nov 26 14:42 boinc_mmap_file
[2025-11-26 14:42:43] -rw------- 1 boincer umatlas       745 Nov 26 14:42 pilotlog.txt
[2025-11-26 14:42:43] -rw------- 1 boincer umatlas   3661759 Nov 26 14:42 log.47556161._001543.job.log.1
[2025-11-26 14:42:43] -rw------- 1 boincer umatlas       353 Nov 26 14:42 output.list
[2025-11-26 14:42:43] -rw-r--r-- 1 boincer umatlas       620 Nov 26 14:42 runtime_log
[2025-11-26 14:42:43] -rw------- 1 boincer umatlas   5867520 Nov 26 14:42 result.tar.gz
[2025-11-26 14:42:43] -rw-r--r-- 1 boincer umatlas      9345 Nov 26 14:42 runtime_log.err
[2025-11-26 14:42:43] -rw------- 1 boincer umatlas       670 Nov 26 14:42 odkMDmhC8h8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmjOMKDmcY7Wzn.diag
[2025-11-26 14:42:43] -rw-r--r-- 1 boincer umatlas     21288 Nov 26 14:42 stderr.txt
[2025-11-26 14:42:43] HITS file was successfully produced:
[2025-11-26 14:42:43] -rw------- 1 boincer umatlas 916641166 Nov 26 14:41 shared/HITS.pool.root.1
[2025-11-26 14:42:43]  *** Contents of shared directory: ***
[2025-11-26 14:42:43] total 1302480
[2025-11-26 14:42:43] -rw-r--r-- 2 boincer umatlas 410611040 Nov 26 07:25 ATLAS.root_0
[2025-11-26 14:42:43] -rw-r--r-- 2 boincer umatlas     15847 Nov 26 07:25 start_atlas.sh
[2025-11-26 14:42:43] -rw-r--r-- 2 boincer umatlas    590103 Nov 26 07:25 input.tar.gz
[2025-11-26 14:42:43] -rw------- 1 boincer umatlas 916641166 Nov 26 14:41 HITS.pool.root.1
[2025-11-26 14:42:43] -rw------- 1 boincer umatlas   5867520 Nov 26 14:42 result.tar.gz
14:42:44 (25247): run_atlas exited; CPU time 293167.702425
14:42:44 (25247): called boinc_finish(0)

</stderr_txt>
]]>

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