Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
06:56:20 (14346): wrapper (7.7.26015): starting
06:56:20 (14346): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 06:56:20] Arguments: --nthreads 8
[2025-11-26 06:56:20] Threads: 8
[2025-11-26 06:56:20] Checking for CVMFS
[2025-11-26 06:56:21] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 06:56:21] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 06:56:21] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 06:56:21] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 06:56:21] 2.11.2.0 6956 117625 138244 153320 3 90 13133700 18432000 943 130560 0 86484688 99.973 5016272 30963 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-26 06:56:21] CVMFS is ok
[2025-11-26 06:56:21] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 06:56:21] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 06:56:21] Further information can be found at the LHC@home message board.
[2025-11-26 06:56:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 06:56:21] Checking for apptainer binary...
[2025-11-26 06:56:21] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 06:56:21] Running /usr/bin/apptainer --version
[2025-11-26 06:56:21] apptainer version 1.3.2-1.el7
[2025-11-26 06:56:21] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 06:56:22] c-206-16.aglt2.org
[2025-11-26 06:56:22] apptainer works
[2025-11-26 06:56:22] Set ATHENA_PROC_NUMBER=8
[2025-11-26 06:56:22] Set ATHENA_CORE_NUMBER=8
[2025-11-26 06:56:22] Starting ATLAS job with PandaID=6896990100
[2025-11-26 06:56:22] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 02:17:34]  *** The last 200 lines of the pilot log: ***
[2025-11-27 02:17:34] 2025-11-27 07:16:36,918 | INFO     | monitor loop #4970: job 0:6896990100 is in state 'finished'
[2025-11-27 02:17:34] 2025-11-27 07:16:36,918 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 02:17:34] 2025-11-27 07:16:37,144 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-27 02:17:34] 2025-11-27 07:16:37,149 | INFO     | found 12 cores (6 cores per socket, 2 sockets) HT, CPU MHz: 1762.3333333333333
[2025-11-27 02:17:34] 2025-11-27 07:16:37,151 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6896990100/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 02:17:34] 2025-11-27 07:16:37,152 | INFO     | extracted standard info from prmon json
[2025-11-27 02:17:34] 2025-11-27 07:16:37,152 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 02:17:34] 2025-11-27 07:16:37,152 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 02:17:34] 2025-11-27 07:16:37,168 | INFO     | fitting pss+swap vs Time
[2025-11-27 02:17:34] 2025-11-27 07:16:37,169 | INFO     | sum of square deviations: 460612221600.5638
[2025-11-27 02:17:34] 2025-11-27 07:16:37,194 | INFO     | sum of deviations: 2333620289585.6187
[2025-11-27 02:17:34] 2025-11-27 07:16:37,194 | INFO     | mean x: 1764192988.652936
[2025-11-27 02:17:34] 2025-11-27 07:16:37,194 | INFO     | mean y: 2873049.486415425
[2025-11-27 02:17:34] 2025-11-27 07:16:37,194 | INFO     | intersect: -8935136755.72311
[2025-11-27 02:17:34] 2025-11-27 07:16:37,195 | INFO     | chi2: 5.26819036431176
[2025-11-27 02:17:34] 2025-11-27 07:16:37,196 | INFO     | sum of square deviations: 454583572993.4218
[2025-11-27 02:17:34] 2025-11-27 07:16:37,222 | INFO     | sum of deviations: 2664016088904.012
[2025-11-27 02:17:34] 2025-11-27 07:16:37,222 | INFO     | mean x: 1764192836.1558099
[2025-11-27 02:17:34] 2025-11-27 07:16:37,222 | INFO     | mean y: 2881400.960387324
[2025-11-27 02:17:34] 2025-11-27 07:16:37,222 | INFO     | intersect: -10335895401.949488
[2025-11-27 02:17:34] 2025-11-27 07:16:37,223 | INFO     | chi2: 2.7177695172038376
[2025-11-27 02:17:34] 2025-11-27 07:16:37,223 | INFO     | current chi2=2.7177695172038376 (change=48.411706311624734 %)
[2025-11-27 02:17:34] 2025-11-27 07:16:37,224 | INFO     | sum of square deviations: 448607762586.26215
[2025-11-27 02:17:34] 2025-11-27 07:16:37,249 | INFO     | sum of deviations: 2766690902816.4585
[2025-11-27 02:17:34] 2025-11-27 07:16:37,249 | INFO     | mean x: 1764192683.658709
[2025-11-27 02:17:34] 2025-11-27 07:16:37,249 | INFO     | mean y: 2884016.902740937
[2025-11-27 02:17:34] 2025-11-27 07:16:37,250 | INFO     | intersect: -10877391037.97964
[2025-11-27 02:17:34] 2025-11-27 07:16:37,251 | INFO     | chi2: 2.2929131605820614
[2025-11-27 02:17:34] 2025-11-27 07:16:37,251 | INFO     | current chi2=2.2929131605820614 (change=15.63253815058193 %)
[2025-11-27 02:17:34] 2025-11-27 07:16:37,251 | INFO     | right removable region: 1130
[2025-11-27 02:17:34] 2025-11-27 07:16:37,252 | INFO     | sum of square deviations: 454583118543.4207
[2025-11-27 02:17:34] 2025-11-27 07:16:37,277 | INFO     | sum of deviations: 2059814632746.3872
[2025-11-27 02:17:34] 2025-11-27 07:16:37,277 | INFO     | mean x: 1764193141.1558099
[2025-11-27 02:17:34] 2025-11-27 07:16:37,277 | INFO     | mean y: 2879965.9639084507
[2025-11-27 02:17:34] 2025-11-27 07:16:37,277 | INFO     | intersect: -7991061513.401536
[2025-11-27 02:17:34] 2025-11-27 07:16:37,278 | INFO     | chi2: 3.41109306674736
[2025-11-27 02:17:34] 2025-11-27 07:16:37,278 | INFO     | current chi2=3.41109306674736 (change=35.251142596230245 %)
[2025-11-27 02:17:34] 2025-11-27 07:16:37,279 | INFO     | sum of square deviations: 448606923104.57855
[2025-11-27 02:17:34] 2025-11-27 07:16:37,304 | INFO     | sum of deviations: 1968224680957.9675
[2025-11-27 02:17:34] 2025-11-27 07:16:37,304 | INFO     | mean x: 1764193293.657825
[2025-11-27 02:17:34] 2025-11-27 07:16:37,304 | INFO     | mean y: 2882302.862953139
[2025-11-27 02:17:34] 2025-11-27 07:16:37,304 | INFO     | intersect: -7737365570.548475
[2025-11-27 02:17:34] 2025-11-27 07:16:37,305 | INFO     | chi2: 3.3233738019573407
[2025-11-27 02:17:34] 2025-11-27 07:16:37,305 | INFO     | current chi2=3.3233738019573407 (change=2.5715881412072887 %)
[2025-11-27 02:17:34] 2025-11-27 07:16:37,306 | INFO     | left removable region: 20
[2025-11-27 02:17:34] 2025-11-27 07:16:37,307 | INFO     | sum of square deviations: 424079970416.8108
[2025-11-27 02:17:34] 2025-11-27 07:16:37,330 | INFO     | sum of deviations: 2253404712778.1875
[2025-11-27 02:17:34] 2025-11-27 07:16:37,330 | INFO     | time since job start (69605s) is within the limit (172800.0s)
[2025-11-27 02:17:34] 2025-11-27 07:16:37,330 | INFO     | mean x: 1764193263.162162
[2025-11-27 02:17:34] 2025-11-27 07:16:37,330 | INFO     | mean y: 2897118.271171171
[2025-11-27 02:17:34] 2025-11-27 07:16:37,330 | INFO     | intersect: -9371375874.518013
[2025-11-27 02:17:34] 2025-11-27 07:16:37,331 | INFO     | chi2: 0.2644831858113147
[2025-11-27 02:17:34] 2025-11-27 07:16:37,332 | INFO     | current memory leak: 5.31 B/s (using 1110 data points, chi2=0.26)
[2025-11-27 02:17:34] 2025-11-27 07:16:37,332 | INFO     | could have reported an average CPU frequency of 2586 MHz (41 samples)
[2025-11-27 02:17:34] 2025-11-27 07:16:37,332 | INFO     | ..............................
[2025-11-27 02:17:34] 2025-11-27 07:16:37,332 | INFO     | . Timing measurements:
[2025-11-27 02:17:34] 2025-11-27 07:16:37,333 | INFO     | . get job = 0 s
[2025-11-27 02:17:34] 2025-11-27 07:16:37,333 | INFO     | . initial setup = 2 s
[2025-11-27 02:17:34] 2025-11-27 07:16:37,333 | INFO     | . payload setup = 6 s
[2025-11-27 02:17:34] 2025-11-27 07:16:37,333 | INFO     | . stage-in = 0 s
[2025-11-27 02:17:34] 2025-11-27 07:16:37,333 | INFO     | . payload execution = 69570 s
[2025-11-27 02:17:34] 2025-11-27 07:16:37,333 | INFO     | . stage-out = 3 s
[2025-11-27 02:17:34] 2025-11-27 07:16:37,333 | INFO     | . log creation = 0 s
[2025-11-27 02:17:34] 2025-11-27 07:16:37,333 | INFO     | ..............................
[2025-11-27 02:17:34] 2025-11-27 07:16:37,904 | INFO     | 
[2025-11-27 02:17:34] 2025-11-27 07:16:37,904 | INFO     | job summary report
[2025-11-27 02:17:34] 2025-11-27 07:16:37,904 | INFO     | --------------------------------------------------
[2025-11-27 02:17:34] 2025-11-27 07:16:37,904 | INFO     | PanDA job id: 6896990100
[2025-11-27 02:17:34] 2025-11-27 07:16:37,904 | INFO     | task id: 47556161
[2025-11-27 02:17:34] 2025-11-27 07:16:37,904 | INFO     | errors: (none)
[2025-11-27 02:17:34] 2025-11-27 07:16:37,905 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 02:17:34] 2025-11-27 07:16:37,905 | INFO     | pilot state: finished 
[2025-11-27 02:17:34] 2025-11-27 07:16:37,905 | INFO     | transexitcode: 0
[2025-11-27 02:17:34] 2025-11-27 07:16:37,905 | INFO     | exeerrorcode: 0
[2025-11-27 02:17:34] 2025-11-27 07:16:37,905 | INFO     | exeerrordiag: 
[2025-11-27 02:17:34] 2025-11-27 07:16:37,905 | INFO     | exitcode: 0
[2025-11-27 02:17:34] 2025-11-27 07:16:37,905 | INFO     | exitmsg: OK
[2025-11-27 02:17:34] 2025-11-27 07:16:37,905 | INFO     | cpuconsumptiontime: 542754 s
[2025-11-27 02:17:34] 2025-11-27 07:16:37,905 | INFO     | nevents: 1000
[2025-11-27 02:17:34] 2025-11-27 07:16:37,905 | INFO     | neventsw: 0
[2025-11-27 02:17:34] 2025-11-27 07:16:37,906 | INFO     | pid: 1365
[2025-11-27 02:17:34] 2025-11-27 07:16:37,906 | INFO     | pgrp: 1365
[2025-11-27 02:17:34] 2025-11-27 07:16:37,906 | INFO     | corecount: 8
[2025-11-27 02:17:34] 2025-11-27 07:16:37,906 | INFO     | event service: False
[2025-11-27 02:17:34] 2025-11-27 07:16:37,906 | INFO     | sizes: {0: 2284042, 1: 2284241, 4: 2284503, 11: 2284531, 69579: 2340760, 69583: 2349754, 69584: 2349938, 69590: 2350280}
[2025-11-27 02:17:34] 2025-11-27 07:16:37,906 | INFO     | --------------------------------------------------
[2025-11-27 02:17:34] 2025-11-27 07:16:37,906 | INFO     | 
[2025-11-27 02:17:34] 2025-11-27 07:16:37,906 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-27 02:17:34] 2025-11-27 07:16:37,924 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 02:17:34] 2025-11-27 07:16:37,925 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 02:17:34] 2025-11-27 07:16:37,925 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 02:17:34] 2025-11-27 07:16:37,925 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 02:17:34] 2025-11-27 07:16:37,925 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 02:17:34] 2025-11-27 07:16:37,925 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 02:17:34] 2025-11-27 07:16:37,925 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 02:17:34] 2025-11-27 07:16:37,925 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 02:17:34] 2025-11-27 07:16:37,925 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 02:17:34] 2025-11-27 07:16:37,926 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 02:17:34] 2025-11-27 07:16:37,926 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 02:17:34] 2025-11-27 07:16:37,926 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 02:17:34] 2025-11-27 07:16:37,926 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 02:17:34] 2025-11-27 07:16:37,926 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 02:17:34] 2025-11-27 07:16:37,926 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 02:17:34] 2025-11-27 07:16:37,926 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 02:17:34] 2025-11-27 07:16:37,926 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 02:17:34] 2025-11-27 07:16:37,926 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 02:17:34] 2025-11-27 07:16:37,927 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 02:17:34] 2025-11-27 07:16:37,927 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 02:17:34] 2025-11-27 07:16:37,927 | INFO     | job 6896990100 has completed (purged errors)
[2025-11-27 02:17:34] 2025-11-27 07:16:37,927 | INFO     | overall cleanup function is called
[2025-11-27 02:17:34] 2025-11-27 07:16:38,940 | INFO     | --- collectZombieJob: --- 10, [1365]
[2025-11-27 02:17:34] 2025-11-27 07:16:38,940 | INFO     | zombie collector waiting for pid 1365
[2025-11-27 02:17:34] 2025-11-27 07:16:38,940 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 02:17:34] 2025-11-27 07:16:38,941 | INFO     | collected zombie processes
[2025-11-27 02:17:34] 2025-11-27 07:16:38,941 | INFO     | will attempt to kill all subprocesses of pid=1365
[2025-11-27 02:17:34] 2025-11-27 07:16:39,059 | INFO     | process IDs to be killed: [1365] (in reverse order)
[2025-11-27 02:17:34] 2025-11-27 07:16:39,110 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 02:17:34] 2025-11-27 07:16:39,110 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 02:17:34] 2025-11-27 07:16:39,114 | INFO     | did not find any defunct processes belonging to 1365
[2025-11-27 02:17:34] 2025-11-27 07:16:39,118 | INFO     | did not find any defunct processes belonging to 1365
[2025-11-27 02:17:34] 2025-11-27 07:16:39,120 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 02:17:34] 2025-11-27 07:16:39,120 | INFO     | ready for new job
[2025-11-27 02:17:34] 2025-11-27 07:16:39,120 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 02:17:34] 2025-11-27 07:16:39,124 | INFO     | ***************************************
[2025-11-27 02:17:34] 2025-11-27 07:16:39,124 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 02:17:34] 2025-11-27 07:16:39,124 | INFO     | ***************************************
[2025-11-27 02:17:34] 2025-11-27 07:16:39,124 | INFO     | 
[2025-11-27 02:17:34] 2025-11-27 07:16:39,125 | INFO     | architecture information:
[2025-11-27 02:17:34] 2025-11-27 07:16:39,125 | INFO     | executing command: cat /etc/os-release
[2025-11-27 02:17:34] 2025-11-27 07:16:39,137 | INFO     | cat /etc/os-release:
[2025-11-27 02:17:34] NAME="CentOS Linux"
[2025-11-27 02:17:34] VERSION="7 (Core)"
[2025-11-27 02:17:34] ID="centos"
[2025-11-27 02:17:34] ID_LIKE="rhel fedora"
[2025-11-27 02:17:34] VERSION_ID="7"
[2025-11-27 02:17:34] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 02:17:34] ANSI_COLOR="0;31"
[2025-11-27 02:17:34] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 02:17:34] HOME_URL="https://www.centos.org/"
[2025-11-27 02:17:34] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 02:17:34] 
[2025-11-27 02:17:34] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 02:17:34] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 02:17:34] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 02:17:34] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 02:17:34] 
[2025-11-27 02:17:34] 2025-11-27 07:16:39,137 | INFO     | ***************************************
[2025-11-27 02:17:34] 2025-11-27 07:16:39,640 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-27 02:17:34] 2025-11-27 07:16:39,655 | INFO     | sufficient remaining disk space (24181211136 B)
[2025-11-27 02:17:34] 2025-11-27 07:16:39,656 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 02:17:34] 2025-11-27 07:16:39,656 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 02:17:34] 2025-11-27 07:16:39,656 | INFO     | update_server=False
[2025-11-27 02:17:34] 2025-11-27 07:16:39,656 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 02:17:34] 2025-11-27 07:16:39,824 | INFO     | all job control threads have been joined
[2025-11-27 02:17:34] 2025-11-27 07:16:40,058 | INFO     | all data control threads have been joined
[2025-11-27 02:17:34] 2025-11-27 07:16:40,313 | INFO     | all payload control threads have been joined
[2025-11-27 02:17:34] 2025-11-27 07:16:40,422 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 02:17:34] 2025-11-27 07:16:40,422 | INFO     | aborting loop
[2025-11-27 02:17:34] 2025-11-27 07:16:40,661 | INFO     | [job] retrieve thread has finished
[2025-11-27 02:17:34] 2025-11-27 07:16:40,765 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 02:17:34] 2025-11-27 07:16:40,830 | INFO     | [job] control thread has finished
[2025-11-27 02:17:34] 2025-11-27 07:16:40,996 | INFO     | [payload] validate_post thread has finished
[2025-11-27 02:17:34] 2025-11-27 07:16:41,021 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 02:17:34] 2025-11-27 07:16:41,035 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 02:17:34] 2025-11-27 07:16:41,063 | INFO     | [data] control thread has finished
[2025-11-27 02:17:34] 2025-11-27 07:16:41,146 | INFO     | [data] copytool_in thread has finished
[2025-11-27 02:17:34] 2025-11-27 07:16:41,318 | INFO     | [payload] control thread has finished
[2025-11-27 02:17:34] 2025-11-27 07:16:41,428 | INFO     | [job] job monitor thread has finished
[2025-11-27 02:17:34] 2025-11-27 07:16:41,521 | INFO     | [job] validate thread has finished
[2025-11-27 02:17:34] 2025-11-27 07:16:41,596 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 02:17:34] 2025-11-27 07:16:41,642 | INFO     | [payload] failed_post thread has finished
[2025-11-27 02:17:34] 2025-11-27 07:16:42,114 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 02:17:34] 2025-11-27 07:16:42,226 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 02:17:34] 2025-11-27 07:16:42,422 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 02:17:34] 2025-11-27 07:16:43,036 | INFO     | [data] copytool_out thread has finished
[2025-11-27 02:17:34] 2025-11-27 07:16:43,427 | INFO     | [job] queue monitor thread has finished
[2025-11-27 02:17:34] 2025-11-27 07:16:46,232 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 02:17:34] 2025-11-27 07:17:10,557 | INFO     | PID=20313 has CPU usage=6.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-27 02:17:34] 2025-11-27 07:17:10,557 | INFO     | .. there are 3 such processes running
[2025-11-27 02:17:34] 2025-11-27 07:17:10,557 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 02:17:34] 2025-11-27 07:17:10,557 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 02:17:34] 2025-11-27 07:17:10,557 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 02:17:34] 2025-11-27 07:17:27,804 | INFO     | [monitor] cgroup control has ended
[2025-11-27 02:17:34] 2025-11-27 07:17:28,661 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140609335564096)>', '<ExcThread(monitor, started 140608899376896)>']
[2025-11-27 02:17:34] 2025-11-27 07:17:29,647 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 02:17:34] 2025-11-27 07:17:29,647 | INFO     | [monitor] control thread has ended
[2025-11-27 02:17:34] 2025-11-27 07:17:33,674 | INFO     | all workflow threads have been joined
[2025-11-27 02:17:34] 2025-11-27 07:17:33,674 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 02:17:34] 2025-11-27 07:17:33,674 | INFO     | traces error code: 0
[2025-11-27 02:17:34] 2025-11-27 07:17:33,675 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 02:17:34] 2025-11-27 07:17:33,783 [wrapper] ==== pilot stdout END ====
[2025-11-27 02:17:34] 2025-11-27 07:17:33,787 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 02:17:34] 2025-11-27 07:17:33,790 [wrapper] pilotpid: 20313
[2025-11-27 02:17:34] 2025-11-27 07:17:33,794 [wrapper] Pilot exit status: 0
[2025-11-27 02:17:34] 2025-11-27 07:17:33,806 [wrapper] pandaids: 6896990100
[2025-11-27 02:17:34] 2025-11-27 07:17:33,855 [wrapper] cleanup supervisor_pilot  7495 20314
[2025-11-27 02:17:34] 2025-11-27 07:17:33,858 [wrapper] Test setup, not cleaning
[2025-11-27 02:17:34] 2025-11-27 07:17:33,861 [wrapper] apfmon messages muted
[2025-11-27 02:17:34] 2025-11-27 07:17:33,864 [wrapper] ==== wrapper stdout END ====
[2025-11-27 02:17:34] 2025-11-27 07:17:33,867 [wrapper] ==== wrapper stderr END ====
[2025-11-27 02:17:34]  *** Error codes and diagnostics ***
[2025-11-27 02:17:34]     "exeErrorCode": 0,
[2025-11-27 02:17:34]     "exeErrorDiag": "",
[2025-11-27 02:17:34]     "pilotErrorCode": 0,
[2025-11-27 02:17:34]     "pilotErrorDiag": "",
[2025-11-27 02:17:34]  *** Listing of results directory ***
[2025-11-27 02:17:34] total 1335604
[2025-11-27 02:17:34] -rw-r--r-- 1 boincer umatlas    576529 Nov 25 07:49 pilot3.tar.gz
[2025-11-27 02:17:34] -rwx------ 1 boincer umatlas     36292 Nov 25 08:17 runpilot2-wrapper.sh
[2025-11-27 02:17:34] -rw-r--r-- 1 boincer umatlas      5112 Nov 25 08:17 queuedata.json
[2025-11-27 02:17:34] -rw-r--r-- 1 boincer umatlas       100 Nov 26 06:56 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 02:17:34] -rwxr-xr-x 1 boincer umatlas      7986 Nov 26 06:56 run_atlas
[2025-11-27 02:17:34] -rw-r--r-- 1 boincer umatlas       105 Nov 26 06:56 job.xml
[2025-11-27 02:17:34] -rw-r--r-- 2 boincer umatlas 409821350 Nov 26 06:56 EVNT.47483658._002170.pool.root.1
[2025-11-27 02:17:34] -rw-r--r-- 2 boincer umatlas     15847 Nov 26 06:56 start_atlas.sh
[2025-11-27 02:17:34] drwxrwx--x 2 boincer umatlas      4096 Nov 26 06:56 shared
[2025-11-27 02:17:34] -rw-r--r-- 2 boincer umatlas    590102 Nov 26 06:56 input.tar.gz
[2025-11-27 02:17:34] -rw-r--r-- 1 boincer umatlas         0 Nov 26 06:56 boinc_lockfile
[2025-11-27 02:17:34] -rw-r--r-- 1 boincer umatlas      2784 Nov 26 06:56 pandaJob.out
[2025-11-27 02:17:34] -rw------- 1 boincer umatlas        57 Nov 26 06:56 setup.sh.local
[2025-11-27 02:17:34] -rw------- 1 boincer umatlas    991830 Nov 26 06:56 agis_schedconf.cvmfs.json
[2025-11-27 02:17:34] drwx------ 5 boincer umatlas      4096 Nov 26 06:56 pilot3
[2025-11-27 02:17:34] -rw-r--r-- 1 boincer umatlas       533 Nov 27 02:07 boinc_task_state.xml
[2025-11-27 02:17:34] -rw-r--r-- 1 boincer umatlas      5953 Nov 27 02:12 init_data.xml
[2025-11-27 02:17:34] -rw------- 1 boincer umatlas 930069711 Nov 27 02:15 HITS.47556161._001540.pool.root.1
[2025-11-27 02:17:34] -rw------- 1 boincer umatlas        95 Nov 27 02:16 pilot_heartbeat.json
[2025-11-27 02:17:34] -rw------- 1 boincer umatlas      1076 Nov 27 02:16 memory_monitor_summary.json
[2025-11-27 02:17:34] -rw------- 1 boincer umatlas   1516240 Nov 27 02:16 agis_ddmendpoints.agis.ALL.json
[2025-11-27 02:17:34] -rw------- 1 boincer umatlas   2297924 Nov 27 02:16 log.47556161._001540.job.log.tgz.1
[2025-11-27 02:17:34] -rw------- 1 boincer umatlas      8652 Nov 27 02:16 heartbeat.json
[2025-11-27 02:17:34] -rw-r--r-- 1 boincer umatlas      8192 Nov 27 02:17 boinc_mmap_file
[2025-11-27 02:17:34] -rw-r--r-- 1 boincer umatlas        29 Nov 27 02:17 wrapper_checkpoint.txt
[2025-11-27 02:17:34] -rw------- 1 boincer umatlas      4821 Nov 27 02:17 pilotlog.txt
[2025-11-27 02:17:34] -rw------- 1 boincer umatlas   9623198 Nov 27 02:17 log.47556161._001540.job.log.1
[2025-11-27 02:17:34] -rw------- 1 boincer umatlas       353 Nov 27 02:17 output.list
[2025-11-27 02:17:34] -rw-r--r-- 1 boincer umatlas       620 Nov 27 02:17 runtime_log
[2025-11-27 02:17:34] -rw------- 1 boincer umatlas  11939840 Nov 27 02:17 result.tar.gz
[2025-11-27 02:17:34] -rw-r--r-- 1 boincer umatlas      9343 Nov 27 02:17 runtime_log.err
[2025-11-27 02:17:34] -rw------- 1 boincer umatlas       668 Nov 27 02:17 0VOLDmw57h8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmlTJKDmAktezm.diag
[2025-11-27 02:17:34] -rw-r--r-- 1 boincer umatlas     21296 Nov 27 02:17 stderr.txt
[2025-11-27 02:17:34] HITS file was successfully produced:
[2025-11-27 02:17:34] -rw------- 1 boincer umatlas 930069711 Nov 27 02:15 shared/HITS.pool.root.1
[2025-11-27 02:17:34]  *** Contents of shared directory: ***
[2025-11-27 02:17:34] total 1320756
[2025-11-27 02:17:34] -rw-r--r-- 2 boincer umatlas 409821350 Nov 26 06:56 ATLAS.root_0
[2025-11-27 02:17:34] -rw-r--r-- 2 boincer umatlas     15847 Nov 26 06:56 start_atlas.sh
[2025-11-27 02:17:34] -rw-r--r-- 2 boincer umatlas    590102 Nov 26 06:56 input.tar.gz
[2025-11-27 02:17:34] -rw------- 1 boincer umatlas 930069711 Nov 27 02:15 HITS.pool.root.1
[2025-11-27 02:17:34] -rw------- 1 boincer umatlas  11939840 Nov 27 02:17 result.tar.gz
02:17:35 (14346): run_atlas exited; CPU time 542184.902455
02:17:35 (14346): called boinc_finish(0)

</stderr_txt>
]]>

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