Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
06:52:03 (10946): wrapper (7.7.26015): starting
06:52:03 (10946): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 06:52:03] Arguments: --nthreads 8
[2025-11-26 06:52:03] Threads: 8
[2025-11-26 06:52:03] Checking for CVMFS
[2025-11-26 06:52:03] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 06:52:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 06:52:03] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 06:52:03] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 06:52:03] 2.11.2.0 2795 47381 83924 153320 3 82 18253090 20275201 1 130560 0 7156851 99.660 3058904 28712 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-26 06:52:03] CVMFS is ok
[2025-11-26 06:52:03] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 06:52:03] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 06:52:03] Further information can be found at the LHC@home message board.
[2025-11-26 06:52:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 06:52:03] Checking for apptainer binary...
[2025-11-26 06:52:03] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 06:52:03] Running /usr/bin/apptainer --version
[2025-11-26 06:52:03] apptainer version 1.3.2-1.el7
[2025-11-26 06:52:03] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 06:52:05] c-204-18.aglt2.org
[2025-11-26 06:52:05] apptainer works
[2025-11-26 06:52:05] Set ATHENA_PROC_NUMBER=8
[2025-11-26 06:52:05] Set ATHENA_CORE_NUMBER=8
[2025-11-26 06:52:05] Starting ATLAS job with PandaID=6891591093
[2025-11-26 06:52:05] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
13:10:57 (7261): wrapper (7.7.26015): starting
13:10:57 (7261): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 13:10:57] Arguments: --nthreads 8
[2025-11-26 13:10:57] Threads: 8
[2025-11-26 13:10:57] This job has been restarted, cleaning up previous attempt
[2025-11-26 13:10:57] Checking for CVMFS
[2025-11-26 13:10:57] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 13:10:57] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 13:10:57] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 13:10:58] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 13:10:58] 2.11.2.0 2795 47760 85612 153330 1 57 18759789 20275200 1 130560 0 7308382 99.666 3072097 28741 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-26 13:10:58] CVMFS is ok
[2025-11-26 13:10:58] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 13:10:58] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 13:10:58] Further information can be found at the LHC@home message board.
[2025-11-26 13:10:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 13:10:58] Checking for apptainer binary...
[2025-11-26 13:10:58] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 13:10:58] Running /usr/bin/apptainer --version
[2025-11-26 13:10:58] apptainer version 1.3.2-1.el7
[2025-11-26 13:10:58] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 13:11:00] c-204-18.aglt2.org
[2025-11-26 13:11:00] apptainer works
[2025-11-26 13:11:00] Set ATHENA_PROC_NUMBER=8
[2025-11-26 13:11:00] Set ATHENA_CORE_NUMBER=8
[2025-11-26 13:11:00] Starting ATLAS job with PandaID=6891591093
[2025-11-26 13:11:00] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 01:32:56]  *** The last 200 lines of the pilot log: ***
[2025-11-27 01:32:56] 2025-11-27 06:32:20,484 | INFO     | monitor loop #3272: job 0:6891591093 is in state 'finished'
[2025-11-27 01:32:56] 2025-11-27 06:32:20,484 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 01:32:56] 2025-11-27 06:32:22,421 | INFO     | time since job start (44464s) is within the limit (172800.0s)
[2025-11-27 01:32:56] 2025-11-27 06:32:22,550 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-27 01:32:56] 2025-11-27 06:32:22,554 | INFO     | found 8 cores (4 cores per socket, 2 sockets) , CPU MHz: 1679.25
[2025-11-27 01:32:56] 2025-11-27 06:32:22,555 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6891591093/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 01:32:56] 2025-11-27 06:32:22,555 | INFO     | extracted standard info from prmon json
[2025-11-27 01:32:56] 2025-11-27 06:32:22,556 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 01:32:56] 2025-11-27 06:32:22,556 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 01:32:56] 2025-11-27 06:32:22,567 | INFO     | fitting pss+swap vs Time
[2025-11-27 01:32:56] 2025-11-27 06:32:22,568 | INFO     | sum of square deviations: 120132261906.10147
[2025-11-27 01:32:56] 2025-11-27 06:32:22,579 | INFO     | sum of deviations: 757440611490.7754
[2025-11-27 01:32:56] 2025-11-27 06:32:22,579 | INFO     | mean x: 1764202914.648834
[2025-11-27 01:32:56] 2025-11-27 06:32:22,579 | INFO     | mean y: 3168338.264746228
[2025-11-27 01:32:56] 2025-11-27 06:32:22,579 | INFO     | intersect: -11120229434.016373
[2025-11-27 01:32:56] 2025-11-27 06:32:22,580 | INFO     | chi2: 7.2310925672153825
[2025-11-27 01:32:56] 2025-11-27 06:32:22,581 | INFO     | sum of square deviations: 117677457813.98215
[2025-11-27 01:32:56] 2025-11-27 06:32:22,592 | INFO     | sum of deviations: 1048495492357.803
[2025-11-27 01:32:56] 2025-11-27 06:32:22,592 | INFO     | mean x: 1764202762.1533148
[2025-11-27 01:32:56] 2025-11-27 06:32:22,592 | INFO     | mean y: 3186420.6864640885
[2025-11-27 01:32:56] 2025-11-27 06:32:22,593 | INFO     | intersect: -15715700425.483593
[2025-11-27 01:32:56] 2025-11-27 06:32:22,593 | INFO     | chi2: 3.6159672077748413
[2025-11-27 01:32:56] 2025-11-27 06:32:22,593 | INFO     | current chi2=3.6159672077748413 (change=49.99417896862421 %)
[2025-11-27 01:32:56] 2025-11-27 06:32:22,594 | INFO     | sum of square deviations: 115256328771.83305
[2025-11-27 01:32:56] 2025-11-27 06:32:22,605 | INFO     | sum of deviations: 1173944730526.3357
[2025-11-27 01:32:56] 2025-11-27 06:32:22,605 | INFO     | mean x: 1764202609.6578581
[2025-11-27 01:32:56] 2025-11-27 06:32:22,605 | INFO     | mean y: 3194313.7371349097
[2025-11-27 01:32:56] 2025-11-27 06:32:22,605 | INFO     | intersect: -17966112701.833824
[2025-11-27 01:32:56] 2025-11-27 06:32:22,606 | INFO     | chi2: 2.780224864373944
[2025-11-27 01:32:56] 2025-11-27 06:32:22,606 | INFO     | current chi2=2.780224864373944 (change=23.112553167073333 %)
[2025-11-27 01:32:56] 2025-11-27 06:32:22,606 | INFO     | right removable region: 718
[2025-11-27 01:32:56] 2025-11-27 06:32:22,607 | INFO     | sum of square deviations: 117677169283.98201
[2025-11-27 01:32:56] 2025-11-27 06:32:22,618 | INFO     | sum of deviations: 531015327395.68555
[2025-11-27 01:32:56] 2025-11-27 06:32:22,618 | INFO     | mean x: 1764203067.1533148
[2025-11-27 01:32:56] 2025-11-27 06:32:22,618 | INFO     | mean y: 3182379.3812154694
[2025-11-27 01:32:56] 2025-11-27 06:32:22,619 | INFO     | intersect: -7957740499.687462
[2025-11-27 01:32:56] 2025-11-27 06:32:22,619 | INFO     | chi2: 4.832368108945824
[2025-11-27 01:32:56] 2025-11-27 06:32:22,619 | INFO     | current chi2=4.832368108945824 (change=33.17236553083267 %)
[2025-11-27 01:32:56] 2025-11-27 06:32:22,620 | INFO     | sum of square deviations: 115255928125.07379
[2025-11-27 01:32:56] 2025-11-27 06:32:22,631 | INFO     | sum of deviations: 469027623630.00696
[2025-11-27 01:32:56] 2025-11-27 06:32:22,631 | INFO     | mean x: 1764203219.6522949
[2025-11-27 01:32:56] 2025-11-27 06:32:22,631 | INFO     | mean y: 3186281.420027816
[2025-11-27 01:32:56] 2025-11-27 06:32:22,631 | INFO     | intersect: -7176141126.502776
[2025-11-27 01:32:56] 2025-11-27 06:32:22,632 | INFO     | chi2: 4.731278820523326
[2025-11-27 01:32:56] 2025-11-27 06:32:22,632 | INFO     | current chi2=4.731278820523326 (change=2.091920278907518 %)
[2025-11-27 01:32:56] 2025-11-27 06:32:22,632 | INFO     | left removable region: 20
[2025-11-27 01:32:56] 2025-11-27 06:32:22,633 | INFO     | sum of square deviations: 105449394298.70625
[2025-11-27 01:32:56] 2025-11-27 06:32:22,643 | INFO     | sum of deviations: 814189147663.0701
[2025-11-27 01:32:56] 2025-11-27 06:32:22,643 | INFO     | mean x: 1764203189.1618912
[2025-11-27 01:32:56] 2025-11-27 06:32:22,643 | INFO     | mean y: 3219031.371060172
[2025-11-27 01:32:56] 2025-11-27 06:32:22,643 | INFO     | intersect: -13618434278.64528
[2025-11-27 01:32:56] 2025-11-27 06:32:22,644 | INFO     | chi2: 0.1539672689547234
[2025-11-27 01:32:56] 2025-11-27 06:32:22,644 | INFO     | current memory leak: 7.72 B/s (using 698 data points, chi2=0.15)
[2025-11-27 01:32:56] 2025-11-27 06:32:22,645 | INFO     | could have reported an average CPU frequency of 2151 MHz (28 samples)
[2025-11-27 01:32:56] 2025-11-27 06:32:22,645 | INFO     | ..............................
[2025-11-27 01:32:56] 2025-11-27 06:32:22,645 | INFO     | . Timing measurements:
[2025-11-27 01:32:56] 2025-11-27 06:32:22,645 | INFO     | . get job = 0 s
[2025-11-27 01:32:56] 2025-11-27 06:32:22,645 | INFO     | . initial setup = 2 s
[2025-11-27 01:32:56] 2025-11-27 06:32:22,646 | INFO     | . payload setup = 9 s
[2025-11-27 01:32:56] 2025-11-27 06:32:22,646 | INFO     | . stage-in = 0 s
[2025-11-27 01:32:56] 2025-11-27 06:32:22,646 | INFO     | . payload execution = 44420 s
[2025-11-27 01:32:56] 2025-11-27 06:32:22,646 | INFO     | . stage-out = 3 s
[2025-11-27 01:32:56] 2025-11-27 06:32:22,646 | INFO     | . log creation = 0 s
[2025-11-27 01:32:56] 2025-11-27 06:32:22,646 | INFO     | ..............................
[2025-11-27 01:32:56] 2025-11-27 06:32:22,736 | INFO     | 
[2025-11-27 01:32:56] 2025-11-27 06:32:22,736 | INFO     | job summary report
[2025-11-27 01:32:56] 2025-11-27 06:32:22,736 | INFO     | --------------------------------------------------
[2025-11-27 01:32:56] 2025-11-27 06:32:22,736 | INFO     | PanDA job id: 6891591093
[2025-11-27 01:32:56] 2025-11-27 06:32:22,736 | INFO     | task id: 47493068
[2025-11-27 01:32:56] 2025-11-27 06:32:22,737 | INFO     | errors: (none)
[2025-11-27 01:32:56] 2025-11-27 06:32:22,737 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 01:32:56] 2025-11-27 06:32:22,737 | INFO     | pilot state: finished 
[2025-11-27 01:32:56] 2025-11-27 06:32:22,737 | INFO     | transexitcode: 0
[2025-11-27 01:32:56] 2025-11-27 06:32:22,737 | INFO     | exeerrorcode: 0
[2025-11-27 01:32:56] 2025-11-27 06:32:22,737 | INFO     | exeerrordiag: 
[2025-11-27 01:32:56] 2025-11-27 06:32:22,738 | INFO     | exitcode: 0
[2025-11-27 01:32:56] 2025-11-27 06:32:22,738 | INFO     | exitmsg: OK
[2025-11-27 01:32:56] 2025-11-27 06:32:22,738 | INFO     | cpuconsumptiontime: 344306 s
[2025-11-27 01:32:56] 2025-11-27 06:32:22,738 | INFO     | nevents: 1000
[2025-11-27 01:32:56] 2025-11-27 06:32:22,738 | INFO     | neventsw: 0
[2025-11-27 01:32:56] 2025-11-27 06:32:22,738 | INFO     | pid: 17471
[2025-11-27 01:32:56] 2025-11-27 06:32:22,739 | INFO     | pgrp: 17471
[2025-11-27 01:32:56] 2025-11-27 06:32:22,739 | INFO     | corecount: 8
[2025-11-27 01:32:56] 2025-11-27 06:32:22,739 | INFO     | event service: False
[2025-11-27 01:32:56] 2025-11-27 06:32:22,739 | INFO     | sizes: {0: 2284082, 1: 2284281, 7: 2284543, 12: 2284571, 44434: 2330290, 44439: 2339284, 44442: 2339468, 44448: 2339714}
[2025-11-27 01:32:56] 2025-11-27 06:32:22,739 | INFO     | --------------------------------------------------
[2025-11-27 01:32:56] 2025-11-27 06:32:22,739 | INFO     | 
[2025-11-27 01:32:56] 2025-11-27 06:32:22,740 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-27 01:32:56] 2025-11-27 06:32:22,769 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 01:32:56] 2025-11-27 06:32:22,769 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 01:32:56] 2025-11-27 06:32:22,769 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 01:32:56] 2025-11-27 06:32:22,770 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 01:32:56] 2025-11-27 06:32:22,770 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 01:32:56] 2025-11-27 06:32:22,770 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 01:32:56] 2025-11-27 06:32:22,770 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 01:32:56] 2025-11-27 06:32:22,770 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 01:32:56] 2025-11-27 06:32:22,771 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 01:32:56] 2025-11-27 06:32:22,771 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 01:32:56] 2025-11-27 06:32:22,771 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 01:32:56] 2025-11-27 06:32:22,771 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 01:32:56] 2025-11-27 06:32:22,771 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 01:32:56] 2025-11-27 06:32:22,772 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 01:32:56] 2025-11-27 06:32:22,772 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 01:32:56] 2025-11-27 06:32:22,772 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 01:32:56] 2025-11-27 06:32:22,772 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 01:32:56] 2025-11-27 06:32:22,772 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 01:32:56] 2025-11-27 06:32:22,772 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 01:32:56] 2025-11-27 06:32:22,773 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 01:32:56] 2025-11-27 06:32:22,773 | INFO     | job 6891591093 has completed (purged errors)
[2025-11-27 01:32:56] 2025-11-27 06:32:22,773 | INFO     | overall cleanup function is called
[2025-11-27 01:32:56] 2025-11-27 06:32:23,789 | INFO     | --- collectZombieJob: --- 10, [17471]
[2025-11-27 01:32:56] 2025-11-27 06:32:23,789 | INFO     | zombie collector waiting for pid 17471
[2025-11-27 01:32:56] 2025-11-27 06:32:23,790 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 01:32:56] 2025-11-27 06:32:23,790 | INFO     | collected zombie processes
[2025-11-27 01:32:56] 2025-11-27 06:32:23,790 | INFO     | will attempt to kill all subprocesses of pid=17471
[2025-11-27 01:32:56] 2025-11-27 06:32:23,877 | INFO     | process IDs to be killed: [17471] (in reverse order)
[2025-11-27 01:32:56] 2025-11-27 06:32:23,936 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 01:32:56] 2025-11-27 06:32:23,936 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 01:32:56] 2025-11-27 06:32:23,940 | INFO     | did not find any defunct processes belonging to 17471
[2025-11-27 01:32:56] 2025-11-27 06:32:23,944 | INFO     | did not find any defunct processes belonging to 17471
[2025-11-27 01:32:56] 2025-11-27 06:32:23,947 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 01:32:56] 2025-11-27 06:32:23,947 | INFO     | ready for new job
[2025-11-27 01:32:56] 2025-11-27 06:32:23,947 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 01:32:56] 2025-11-27 06:32:23,950 | INFO     | ***************************************
[2025-11-27 01:32:56] 2025-11-27 06:32:23,950 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 01:32:56] 2025-11-27 06:32:23,950 | INFO     | ***************************************
[2025-11-27 01:32:56] 2025-11-27 06:32:23,951 | INFO     | 
[2025-11-27 01:32:56] 2025-11-27 06:32:23,951 | INFO     | architecture information:
[2025-11-27 01:32:56] 2025-11-27 06:32:23,952 | INFO     | executing command: cat /etc/os-release
[2025-11-27 01:32:56] 2025-11-27 06:32:23,970 | INFO     | cat /etc/os-release:
[2025-11-27 01:32:56] NAME="CentOS Linux"
[2025-11-27 01:32:56] VERSION="7 (Core)"
[2025-11-27 01:32:56] ID="centos"
[2025-11-27 01:32:56] ID_LIKE="rhel fedora"
[2025-11-27 01:32:56] VERSION_ID="7"
[2025-11-27 01:32:56] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 01:32:56] ANSI_COLOR="0;31"
[2025-11-27 01:32:56] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 01:32:56] HOME_URL="https://www.centos.org/"
[2025-11-27 01:32:56] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 01:32:56] 
[2025-11-27 01:32:56] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 01:32:56] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 01:32:56] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 01:32:56] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 01:32:56] 
[2025-11-27 01:32:56] 2025-11-27 06:32:23,970 | INFO     | ***************************************
[2025-11-27 01:32:56] 2025-11-27 06:32:24,473 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-27 01:32:56] 2025-11-27 06:32:24,494 | INFO     | sufficient remaining disk space (17440964608 B)
[2025-11-27 01:32:56] 2025-11-27 06:32:24,494 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 01:32:56] 2025-11-27 06:32:24,495 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 01:32:56] 2025-11-27 06:32:24,495 | INFO     | update_server=False
[2025-11-27 01:32:56] 2025-11-27 06:32:24,495 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 01:32:56] 2025-11-27 06:32:24,496 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 01:32:56] 2025-11-27 06:32:24,496 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 01:32:56] 2025-11-27 06:32:24,496 | INFO     | aborting loop
[2025-11-27 01:32:56] 2025-11-27 06:32:24,497 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 01:32:56] 2025-11-27 06:32:24,527 | INFO     | all data control threads have been joined
[2025-11-27 01:32:56] 2025-11-27 06:32:25,128 | INFO     | all payload control threads have been joined
[2025-11-27 01:32:56] 2025-11-27 06:32:25,501 | INFO     | [job] retrieve thread has finished
[2025-11-27 01:32:56] 2025-11-27 06:32:25,501 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 01:32:56] 2025-11-27 06:32:25,502 | INFO     | [job] job monitor thread has finished
[2025-11-27 01:32:56] 2025-11-27 06:32:25,503 | INFO     | [job] queue monitor thread has finished
[2025-11-27 01:32:56] 2025-11-27 06:32:25,533 | INFO     | [data] control thread has finished
[2025-11-27 01:32:56] 2025-11-27 06:32:25,699 | INFO     | all job control threads have been joined
[2025-11-27 01:32:56] 2025-11-27 06:32:25,710 | INFO     | [payload] validate_post thread has finished
[2025-11-27 01:32:56] 2025-11-27 06:32:25,773 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 01:32:56] 2025-11-27 06:32:26,095 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 01:32:56] 2025-11-27 06:32:26,133 | INFO     | [payload] control thread has finished
[2025-11-27 01:32:56] 2025-11-27 06:32:26,142 | INFO     | [job] validate thread has finished
[2025-11-27 01:32:56] 2025-11-27 06:32:26,244 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 01:32:56] 2025-11-27 06:32:26,296 | INFO     | [payload] failed_post thread has finished
[2025-11-27 01:32:56] 2025-11-27 06:32:26,497 | INFO     | [data] copytool_out thread has finished
[2025-11-27 01:32:56] 2025-11-27 06:32:26,705 | INFO     | [job] control thread has finished
[2025-11-27 01:32:56] 2025-11-27 06:32:27,001 | INFO     | [data] copytool_in thread has finished
[2025-11-27 01:32:56] 2025-11-27 06:32:27,179 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 01:32:56] 2025-11-27 06:32:31,168 | INFO     | [monitor] cgroup control has ended
[2025-11-27 01:32:56] 2025-11-27 06:32:31,182 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 01:32:56] 2025-11-27 06:32:33,058 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140531296962368)>', '<ExcThread(monitor, started 140530541369088)>']
[2025-11-27 01:32:56] 2025-11-27 06:32:38,084 | INFO     | all workflow threads have been joined
[2025-11-27 01:32:56] 2025-11-27 06:32:38,084 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 01:32:56] 2025-11-27 06:32:38,085 | INFO     | traces error code: 0
[2025-11-27 01:32:56] 2025-11-27 06:32:38,085 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 01:32:56] 2025-11-27 06:32:54,512 | INFO     | 44469s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-27 01:32:56] 2025-11-27 06:32:55,632 | INFO     | PID=11007 has CPU usage=6.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-27 01:32:56] 2025-11-27 06:32:55,632 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 01:32:56] 2025-11-27 06:32:55,632 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 01:32:56] 2025-11-27 06:32:55,633 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 01:32:56] 2025-11-27 06:32:55,633 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 01:32:56] 2025-11-27 06:32:55,633 | INFO     | [monitor] control thread has ended
[2025-11-27 01:32:56] 2025-11-27 06:32:55,769 [wrapper] ==== pilot stdout END ====
[2025-11-27 01:32:56] 2025-11-27 06:32:55,774 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 01:32:56] 2025-11-27 06:32:55,779 [wrapper] pilotpid: 11007
[2025-11-27 01:32:56] 2025-11-27 06:32:55,784 [wrapper] Pilot exit status: 0
[2025-11-27 01:32:56] 2025-11-27 06:32:55,800 [wrapper] pandaids: 6891591093 6891591093
[2025-11-27 01:32:56] 2025-11-27 06:32:55,843 [wrapper] cleanup supervisor_pilot 28885 11008
[2025-11-27 01:32:56] 2025-11-27 06:32:55,847 [wrapper] Test setup, not cleaning
[2025-11-27 01:32:56] 2025-11-27 06:32:55,852 [wrapper] apfmon messages muted
[2025-11-27 01:32:56] 2025-11-27 06:32:55,856 [wrapper] ==== wrapper stdout END ====
[2025-11-27 01:32:56] 2025-11-27 06:32:55,860 [wrapper] ==== wrapper stderr END ====
[2025-11-27 01:32:56]  *** Error codes and diagnostics ***
[2025-11-27 01:32:56]     "exeErrorCode": 0,
[2025-11-27 01:32:56]     "exeErrorDiag": "",
[2025-11-27 01:32:56]     "pilotErrorCode": 0,
[2025-11-27 01:32:56]     "pilotErrorDiag": "",
[2025-11-27 01:32:56]  *** Listing of results directory ***
[2025-11-27 01:32:56] total 1713236
[2025-11-27 01:32:56] drwx------ 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-27 01:32:56] -rw-r--r-- 1 boincer umatlas    576529 Nov 18 12:59 pilot3.tar.gz
[2025-11-27 01:32:56] -rwx------ 1 boincer umatlas     36292 Nov 18 13:05 runpilot2-wrapper.sh
[2025-11-27 01:32:56] -rw-r--r-- 1 boincer umatlas      5112 Nov 18 13:05 queuedata.json
[2025-11-27 01:32:56] -rw-r--r-- 1 boincer umatlas       100 Nov 26 06:52 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 01:32:56] -rwxr-xr-x 1 boincer umatlas      7986 Nov 26 06:52 run_atlas
[2025-11-27 01:32:56] -rw-r--r-- 1 boincer umatlas       105 Nov 26 06:52 job.xml
[2025-11-27 01:32:56] -rw-r--r-- 3 boincer umatlas 410807282 Nov 26 06:52 EVNT.47493065._000611.pool.root.1
[2025-11-27 01:32:56] -rw-r--r-- 3 boincer umatlas 410807282 Nov 26 06:52 ATLAS.root_0
[2025-11-27 01:32:56] -rw-r--r-- 2 boincer umatlas     15120 Nov 26 06:52 start_atlas.sh
[2025-11-27 01:32:56] drwxrwx--x 2 boincer umatlas      4096 Nov 26 06:52 shared
[2025-11-27 01:32:56] -rw-r--r-- 2 boincer umatlas    590088 Nov 26 06:52 input.tar.gz
[2025-11-27 01:32:56] -rw-r--r-- 1 boincer umatlas         0 Nov 26 06:52 boinc_lockfile
[2025-11-27 01:32:56] -rw-r--r-- 1 boincer umatlas      2772 Nov 26 13:11 pandaJob.out
[2025-11-27 01:32:56] -rw------- 1 boincer umatlas    991530 Nov 26 13:11 agis_schedconf.cvmfs.json
[2025-11-27 01:32:56] -rw-r--r-- 1 boincer umatlas       532 Nov 27 01:19 boinc_task_state.xml
[2025-11-27 01:32:56] -rw-r--r-- 1 boincer umatlas      5912 Nov 27 01:28 init_data.xml
[2025-11-27 01:32:56] -rw------- 1 boincer umatlas 912625466 Nov 27 01:31 HITS.47493068._005608.pool.root.1
[2025-11-27 01:32:56] -rw------- 1 boincer umatlas      1062 Nov 27 01:32 memory_monitor_summary.json
[2025-11-27 01:32:56] -rw------- 1 boincer umatlas   1516240 Nov 27 01:32 agis_ddmendpoints.agis.ALL.json
[2025-11-27 01:32:56] -rw------- 1 boincer umatlas   1969378 Nov 27 01:32 log.47493068._005608.job.log.tgz.1
[2025-11-27 01:32:56] -rw------- 1 boincer umatlas        96 Nov 27 01:32 pilot_heartbeat.json
[2025-11-27 01:32:56] -rw------- 1 boincer umatlas      8675 Nov 27 01:32 heartbeat.json
[2025-11-27 01:32:56] -rw-r--r-- 1 boincer umatlas      8192 Nov 27 01:32 boinc_mmap_file
[2025-11-27 01:32:56] -rw-r--r-- 1 boincer umatlas        29 Nov 27 01:32 wrapper_checkpoint.txt
[2025-11-27 01:32:56] -rw------- 1 boincer umatlas       861 Nov 27 01:32 pilotlog.txt
[2025-11-27 01:32:56] -rw------- 1 boincer umatlas   6135211 Nov 27 01:32 log.47493068._005608.job.log.1
[2025-11-27 01:32:56] -rw------- 1 boincer umatlas       353 Nov 27 01:32 output.list
[2025-11-27 01:32:56] -rw-r--r-- 1 boincer umatlas       620 Nov 27 01:32 runtime_log
[2025-11-27 01:32:56] -rw------- 1 boincer umatlas   8120320 Nov 27 01:32 result.tar.gz
[2025-11-27 01:32:56] -rw-r--r-- 1 boincer umatlas      8789 Nov 27 01:32 runtime_log.err
[2025-11-27 01:32:56] -rw------- 1 boincer umatlas       793 Nov 27 01:32 79ALDmyFff8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmsAGKDmABtXKn.diag
[2025-11-27 01:32:56] -rw-r--r-- 1 boincer umatlas     23480 Nov 27 01:32 stderr.txt
[2025-11-27 01:32:56] HITS file was successfully produced:
[2025-11-27 01:32:56] -rw------- 1 boincer umatlas 912625466 Nov 27 01:31 shared/HITS.pool.root.1
[2025-11-27 01:32:56]  *** Contents of shared directory: ***
[2025-11-27 01:32:56] total 1300948
[2025-11-27 01:32:56] -rw-r--r-- 3 boincer umatlas 410807282 Nov 26 06:52 ATLAS.root_0
[2025-11-27 01:32:56] -rw-r--r-- 2 boincer umatlas     15120 Nov 26 06:52 start_atlas.sh
[2025-11-27 01:32:56] -rw-r--r-- 2 boincer umatlas    590088 Nov 26 06:52 input.tar.gz
[2025-11-27 01:32:56] -rw------- 1 boincer umatlas 912625466 Nov 27 01:31 HITS.pool.root.1
[2025-11-27 01:32:56] -rw------- 1 boincer umatlas   8120320 Nov 27 01:32 result.tar.gz
01:32:57 (7261): run_atlas exited; CPU time 341755.739555
01:32:57 (7261): called boinc_finish(0)

</stderr_txt>
]]>

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