Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
06:51:09 (16507): wrapper (7.7.26015): starting
06:51:09 (16507): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 06:51:09] Arguments: --nthreads 8
[2025-11-26 06:51:09] Threads: 8
[2025-11-26 06:51:09] Checking for CVMFS
[2025-11-26 06:51:09] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 06:51:10] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 06:51:10] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 06:51:10] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 06:51:10] 2.11.2.0 26213 65569 84484 153320 3 82 17982509 20275200 1 130560 0 16351896 99.845 3689437 30492 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-26 06:51:10] CVMFS is ok
[2025-11-26 06:51:10] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 06:51:10] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 06:51:10] Further information can be found at the LHC@home message board.
[2025-11-26 06:51:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 06:51:10] Checking for apptainer binary...
[2025-11-26 06:51:10] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 06:51:10] Running /usr/bin/apptainer --version
[2025-11-26 06:51:10] apptainer version 1.3.2-1.el7
[2025-11-26 06:51:10] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 06:51:11] c-115-4.aglt2.org
[2025-11-26 06:51:11] apptainer works
[2025-11-26 06:51:11] Set ATHENA_PROC_NUMBER=8
[2025-11-26 06:51:11] Set ATHENA_CORE_NUMBER=8
[2025-11-26 06:51:11] Starting ATLAS job with PandaID=6896450458
[2025-11-26 06:51:11] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 18:01:55]  *** The last 200 lines of the pilot log: ***
[2025-11-26 18:01:55] 2025-11-26 23:01:20,675 | INFO     | monitor loop #2933: job 0:6896450458 is in state 'finished'
[2025-11-26 18:01:55] 2025-11-26 23:01:20,676 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 18:01:55] 2025-11-26 23:01:21,836 | INFO     | time since job start (40192s) is within the limit (172800.0s)
[2025-11-26 18:01:55] 2025-11-26 23:01:23,099 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-26 18:01:55] 2025-11-26 23:01:23,103 | INFO     | found 8 cores (4 cores per socket, 2 sockets) , CPU MHz: 1712.5
[2025-11-26 18:01:55] 2025-11-26 23:01:23,104 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6896450458/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 18:01:55] 2025-11-26 23:01:23,105 | INFO     | extracted standard info from prmon json
[2025-11-26 18:01:55] 2025-11-26 23:01:23,105 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 18:01:55] 2025-11-26 23:01:23,105 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 18:01:55] 2025-11-26 23:01:23,115 | INFO     | fitting pss+swap vs Time
[2025-11-26 18:01:55] 2025-11-26 23:01:23,115 | INFO     | sum of square deviations: 88742914090.34897
[2025-11-26 18:01:55] 2025-11-26 23:01:23,124 | INFO     | sum of deviations: 716300523748.1625
[2025-11-26 18:01:55] 2025-11-26 23:01:23,124 | INFO     | mean x: 1764177990.6843703
[2025-11-26 18:01:55] 2025-11-26 23:01:23,124 | INFO     | mean y: 3131250.4719271623
[2025-11-26 18:01:55] 2025-11-26 23:01:23,124 | INFO     | intersect: -14236671799.331505
[2025-11-26 18:01:55] 2025-11-26 23:01:23,125 | INFO     | chi2: 5.815352727589878
[2025-11-26 18:01:55] 2025-11-26 23:01:23,125 | INFO     | sum of square deviations: 86738390800.48944
[2025-11-26 18:01:55] 2025-11-26 23:01:23,133 | INFO     | sum of deviations: 949852547967.5658
[2025-11-26 18:01:55] 2025-11-26 23:01:23,134 | INFO     | mean x: 1764177838.1896024
[2025-11-26 18:01:55] 2025-11-26 23:01:23,134 | INFO     | mean y: 3149006.4067278286
[2025-11-26 18:01:55] 2025-11-26 23:01:23,134 | INFO     | intersect: -19315964470.42354
[2025-11-26 18:01:55] 2025-11-26 23:01:23,134 | INFO     | chi2: 2.7484679402757166
[2025-11-26 18:01:55] 2025-11-26 23:01:23,135 | INFO     | current chi2=2.7484679402757166 (change=52.7377259983541 %)
[2025-11-26 18:01:55] 2025-11-26 23:01:23,135 | INFO     | sum of square deviations: 84764286685.59299
[2025-11-26 18:01:55] 2025-11-26 23:01:23,143 | INFO     | sum of deviations: 1016003174184.0161
[2025-11-26 18:01:55] 2025-11-26 23:01:23,143 | INFO     | mean x: 1764177685.6949153
[2025-11-26 18:01:55] 2025-11-26 23:01:23,144 | INFO     | mean y: 3154103.30816641
[2025-11-26 18:01:55] 2025-11-26 23:01:23,144 | INFO     | intersect: -21142663299.0023
[2025-11-26 18:01:55] 2025-11-26 23:01:23,144 | INFO     | chi2: 2.3311247545914937
[2025-11-26 18:01:55] 2025-11-26 23:01:23,145 | INFO     | current chi2=2.3311247545914937 (change=15.184575361732488 %)
[2025-11-26 18:01:55] 2025-11-26 23:01:23,145 | INFO     | right removable region: 648
[2025-11-26 18:01:55] 2025-11-26 23:01:23,145 | INFO     | sum of square deviations: 86738115690.48938
[2025-11-26 18:01:55] 2025-11-26 23:01:23,153 | INFO     | sum of deviations: 523153769112.84735
[2025-11-26 18:01:55] 2025-11-26 23:01:23,153 | INFO     | mean x: 1764178143.1896024
[2025-11-26 18:01:55] 2025-11-26 23:01:23,154 | INFO     | mean y: 3145916.5657492355
[2025-11-26 18:01:55] 2025-11-26 23:01:23,154 | INFO     | intersect: -10637348607.081627
[2025-11-26 18:01:55] 2025-11-26 23:01:23,154 | INFO     | chi2: 3.6702312023204646
[2025-11-26 18:01:55] 2025-11-26 23:01:23,154 | INFO     | current chi2=3.6702312023204646 (change=36.88721262069412 %)
[2025-11-26 18:01:55] 2025-11-26 23:01:23,155 | INFO     | sum of square deviations: 84763776237.98146
[2025-11-26 18:01:55] 2025-11-26 23:01:23,163 | INFO     | sum of deviations: 482627522450.239
[2025-11-26 18:01:55] 2025-11-26 23:01:23,163 | INFO     | mean x: 1764178295.6933744
[2025-11-26 18:01:55] 2025-11-26 23:01:23,163 | INFO     | mean y: 3149044.9861325114
[2025-11-26 18:01:55] 2025-11-26 23:01:23,163 | INFO     | intersect: -10041719621.795372
[2025-11-26 18:01:55] 2025-11-26 23:01:23,164 | INFO     | chi2: 3.6321433648405614
[2025-11-26 18:01:55] 2025-11-26 23:01:23,164 | INFO     | current chi2=3.6321433648405614 (change=1.0377503590461155 %)
[2025-11-26 18:01:55] 2025-11-26 23:01:23,164 | INFO     | left removable region: 20
[2025-11-26 18:01:55] 2025-11-26 23:01:23,165 | INFO     | sum of square deviations: 76799190450.50168
[2025-11-26 18:01:55] 2025-11-26 23:01:23,172 | INFO     | sum of deviations: 721574869818.9204
[2025-11-26 18:01:55] 2025-11-26 23:01:23,172 | INFO     | mean x: 1764178265.205414
[2025-11-26 18:01:55] 2025-11-26 23:01:23,172 | INFO     | mean y: 3177694.729299363
[2025-11-26 18:01:55] 2025-11-26 23:01:23,173 | INFO     | intersect: -16572344710.984417
[2025-11-26 18:01:55] 2025-11-26 23:01:23,173 | INFO     | chi2: 0.09448103424134251
[2025-11-26 18:01:55] 2025-11-26 23:01:23,173 | INFO     | current memory leak: 9.40 B/s (using 628 data points, chi2=0.09)
[2025-11-26 18:01:55] 2025-11-26 23:01:23,174 | INFO     | could have reported an average CPU frequency of 2416 MHz (25 samples)
[2025-11-26 18:01:55] 2025-11-26 23:01:23,174 | INFO     | ..............................
[2025-11-26 18:01:55] 2025-11-26 23:01:23,175 | INFO     | . Timing measurements:
[2025-11-26 18:01:55] 2025-11-26 23:01:23,175 | INFO     | . get job = 0 s
[2025-11-26 18:01:55] 2025-11-26 23:01:23,175 | INFO     | . initial setup = 2 s
[2025-11-26 18:01:55] 2025-11-26 23:01:23,175 | INFO     | . payload setup = 9 s
[2025-11-26 18:01:55] 2025-11-26 23:01:23,175 | INFO     | . stage-in = 0 s
[2025-11-26 18:01:55] 2025-11-26 23:01:23,175 | INFO     | . payload execution = 40152 s
[2025-11-26 18:01:55] 2025-11-26 23:01:23,175 | INFO     | . stage-out = 3 s
[2025-11-26 18:01:55] 2025-11-26 23:01:23,176 | INFO     | . log creation = 0 s
[2025-11-26 18:01:55] 2025-11-26 23:01:23,176 | INFO     | ..............................
[2025-11-26 18:01:55] 2025-11-26 23:01:23,256 | INFO     | 
[2025-11-26 18:01:55] 2025-11-26 23:01:23,256 | INFO     | job summary report
[2025-11-26 18:01:55] 2025-11-26 23:01:23,257 | INFO     | --------------------------------------------------
[2025-11-26 18:01:55] 2025-11-26 23:01:23,257 | INFO     | PanDA job id: 6896450458
[2025-11-26 18:01:55] 2025-11-26 23:01:23,257 | INFO     | task id: 47556161
[2025-11-26 18:01:55] 2025-11-26 23:01:23,257 | INFO     | errors: (none)
[2025-11-26 18:01:55] 2025-11-26 23:01:23,257 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 18:01:55] 2025-11-26 23:01:23,258 | INFO     | pilot state: finished 
[2025-11-26 18:01:55] 2025-11-26 23:01:23,258 | INFO     | transexitcode: 0
[2025-11-26 18:01:55] 2025-11-26 23:01:23,258 | INFO     | exeerrorcode: 0
[2025-11-26 18:01:55] 2025-11-26 23:01:23,258 | INFO     | exeerrordiag: 
[2025-11-26 18:01:55] 2025-11-26 23:01:23,258 | INFO     | exitcode: 0
[2025-11-26 18:01:55] 2025-11-26 23:01:23,258 | INFO     | exitmsg: OK
[2025-11-26 18:01:55] 2025-11-26 23:01:23,259 | INFO     | cpuconsumptiontime: 313138 s
[2025-11-26 18:01:55] 2025-11-26 23:01:23,259 | INFO     | nevents: 1000
[2025-11-26 18:01:55] 2025-11-26 23:01:23,259 | INFO     | neventsw: 0
[2025-11-26 18:01:55] 2025-11-26 23:01:23,259 | INFO     | pid: 27563
[2025-11-26 18:01:55] 2025-11-26 23:01:23,259 | INFO     | pgrp: 27563
[2025-11-26 18:01:55] 2025-11-26 23:01:23,259 | INFO     | corecount: 8
[2025-11-26 18:01:55] 2025-11-26 23:01:23,260 | INFO     | event service: False
[2025-11-26 18:01:55] 2025-11-26 23:01:23,260 | INFO     | sizes: {0: 2284262, 6: 2284524, 11: 2284552, 40164: 2328084, 40168: 2337134, 40176: 2337416}
[2025-11-26 18:01:55] 2025-11-26 23:01:23,260 | INFO     | --------------------------------------------------
[2025-11-26 18:01:55] 2025-11-26 23:01:23,260 | INFO     | 
[2025-11-26 18:01:55] 2025-11-26 23:01:23,260 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-26 18:01:55] 2025-11-26 23:01:23,289 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 18:01:55] 2025-11-26 23:01:23,289 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 18:01:55] 2025-11-26 23:01:23,290 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 18:01:55] 2025-11-26 23:01:23,290 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 18:01:55] 2025-11-26 23:01:23,290 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 18:01:55] 2025-11-26 23:01:23,290 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 18:01:55] 2025-11-26 23:01:23,290 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 18:01:55] 2025-11-26 23:01:23,290 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 18:01:55] 2025-11-26 23:01:23,291 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 18:01:55] 2025-11-26 23:01:23,291 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 18:01:55] 2025-11-26 23:01:23,291 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 18:01:55] 2025-11-26 23:01:23,291 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 18:01:55] 2025-11-26 23:01:23,291 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 18:01:55] 2025-11-26 23:01:23,291 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 18:01:55] 2025-11-26 23:01:23,292 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 18:01:55] 2025-11-26 23:01:23,292 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 18:01:55] 2025-11-26 23:01:23,292 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 18:01:55] 2025-11-26 23:01:23,292 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 18:01:55] 2025-11-26 23:01:23,292 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 18:01:55] 2025-11-26 23:01:23,292 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 18:01:55] 2025-11-26 23:01:23,293 | INFO     | job 6896450458 has completed (purged errors)
[2025-11-26 18:01:55] 2025-11-26 23:01:23,293 | INFO     | overall cleanup function is called
[2025-11-26 18:01:55] 2025-11-26 23:01:24,304 | INFO     | --- collectZombieJob: --- 10, [27563]
[2025-11-26 18:01:55] 2025-11-26 23:01:24,305 | INFO     | zombie collector waiting for pid 27563
[2025-11-26 18:01:55] 2025-11-26 23:01:24,305 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 18:01:55] 2025-11-26 23:01:24,305 | INFO     | collected zombie processes
[2025-11-26 18:01:55] 2025-11-26 23:01:24,305 | INFO     | will attempt to kill all subprocesses of pid=27563
[2025-11-26 18:01:55] 2025-11-26 23:01:24,391 | INFO     | process IDs to be killed: [27563] (in reverse order)
[2025-11-26 18:01:55] 2025-11-26 23:01:24,446 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 18:01:55] 2025-11-26 23:01:24,446 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 18:01:55] 2025-11-26 23:01:24,451 | INFO     | did not find any defunct processes belonging to 27563
[2025-11-26 18:01:55] 2025-11-26 23:01:24,454 | INFO     | did not find any defunct processes belonging to 27563
[2025-11-26 18:01:55] 2025-11-26 23:01:24,456 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 18:01:55] 2025-11-26 23:01:24,456 | INFO     | ready for new job
[2025-11-26 18:01:55] 2025-11-26 23:01:24,456 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 18:01:55] 2025-11-26 23:01:24,459 | INFO     | ***************************************
[2025-11-26 18:01:55] 2025-11-26 23:01:24,459 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 18:01:55] 2025-11-26 23:01:24,459 | INFO     | ***************************************
[2025-11-26 18:01:55] 2025-11-26 23:01:24,460 | INFO     | 
[2025-11-26 18:01:55] 2025-11-26 23:01:24,460 | INFO     | architecture information:
[2025-11-26 18:01:55] 2025-11-26 23:01:24,461 | INFO     | executing command: cat /etc/os-release
[2025-11-26 18:01:55] 2025-11-26 23:01:24,479 | INFO     | cat /etc/os-release:
[2025-11-26 18:01:55] NAME="CentOS Linux"
[2025-11-26 18:01:55] VERSION="7 (Core)"
[2025-11-26 18:01:55] ID="centos"
[2025-11-26 18:01:55] ID_LIKE="rhel fedora"
[2025-11-26 18:01:55] VERSION_ID="7"
[2025-11-26 18:01:55] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 18:01:55] ANSI_COLOR="0;31"
[2025-11-26 18:01:55] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 18:01:55] HOME_URL="https://www.centos.org/"
[2025-11-26 18:01:55] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 18:01:55] 
[2025-11-26 18:01:55] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 18:01:55] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 18:01:55] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 18:01:55] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 18:01:55] 
[2025-11-26 18:01:55] 2025-11-26 23:01:24,479 | INFO     | ***************************************
[2025-11-26 18:01:55] 2025-11-26 23:01:24,983 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-26 18:01:55] 2025-11-26 23:01:25,004 | INFO     | sufficient remaining disk space (17485004800 B)
[2025-11-26 18:01:55] 2025-11-26 23:01:25,004 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 18:01:55] 2025-11-26 23:01:25,005 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 18:01:55] 2025-11-26 23:01:25,005 | INFO     | update_server=False
[2025-11-26 18:01:55] 2025-11-26 23:01:25,005 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 18:01:55] 2025-11-26 23:01:25,005 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 18:01:55] 2025-11-26 23:01:25,006 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 18:01:55] 2025-11-26 23:01:25,007 | INFO     | aborting loop
[2025-11-26 18:01:55] 2025-11-26 23:01:25,099 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 18:01:55] 2025-11-26 23:01:25,178 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 18:01:55] 2025-11-26 23:01:25,816 | INFO     | all job control threads have been joined
[2025-11-26 18:01:55] 2025-11-26 23:01:25,891 | INFO     | all payload control threads have been joined
[2025-11-26 18:01:55] 2025-11-26 23:01:25,960 | INFO     | all data control threads have been joined
[2025-11-26 18:01:55] 2025-11-26 23:01:26,010 | INFO     | [job] job monitor thread has finished
[2025-11-26 18:01:55] 2025-11-26 23:01:26,011 | INFO     | [job] retrieve thread has finished
[2025-11-26 18:01:55] 2025-11-26 23:01:26,012 | INFO     | [job] queue monitor thread has finished
[2025-11-26 18:01:55] 2025-11-26 23:01:26,079 | INFO     | [data] copytool_in thread has finished
[2025-11-26 18:01:55] 2025-11-26 23:01:26,085 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 18:01:55] 2025-11-26 23:01:26,542 | INFO     | [payload] validate_post thread has finished
[2025-11-26 18:01:55] 2025-11-26 23:01:26,775 | INFO     | [job] validate thread has finished
[2025-11-26 18:01:55] 2025-11-26 23:01:26,822 | INFO     | [job] control thread has finished
[2025-11-26 18:01:55] 2025-11-26 23:01:26,885 | INFO     | [payload] failed_post thread has finished
[2025-11-26 18:01:55] 2025-11-26 23:01:26,897 | INFO     | [payload] control thread has finished
[2025-11-26 18:01:55] 2025-11-26 23:01:26,966 | INFO     | [data] control thread has finished
[2025-11-26 18:01:55] 2025-11-26 23:01:27,056 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 18:01:55] 2025-11-26 23:01:27,101 | INFO     | [data] copytool_out thread has finished
[2025-11-26 18:01:55] 2025-11-26 23:01:27,446 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 18:01:55] 2025-11-26 23:01:29,184 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 18:01:55] 2025-11-26 23:01:35,603 | INFO     | job.realtimelogging is not enabled
[2025-11-26 18:01:55] 2025-11-26 23:01:35,607 | INFO     | [monitor] cgroup control has ended
[2025-11-26 18:01:55] 2025-11-26 23:01:36,609 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 18:01:55] 2025-11-26 23:01:37,804 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140466025781056)>', '<ExcThread(monitor, started 140465252837120)>']
[2025-11-26 18:01:55] 2025-11-26 23:01:42,830 | INFO     | all workflow threads have been joined
[2025-11-26 18:01:55] 2025-11-26 23:01:42,830 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 18:01:55] 2025-11-26 23:01:42,830 | INFO     | traces error code: 0
[2025-11-26 18:01:55] 2025-11-26 23:01:42,831 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 18:01:55] 2025-11-26 23:01:55,045 | INFO     | PID=20202 has CPU usage=6.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-26 18:01:55] 2025-11-26 23:01:55,045 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 18:01:55] 2025-11-26 23:01:55,045 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 18:01:55] 2025-11-26 23:01:55,046 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 18:01:55] 2025-11-26 23:01:55,046 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 18:01:55] 2025-11-26 23:01:55,046 | INFO     | [monitor] control thread has ended
[2025-11-26 18:01:55] 2025-11-26 23:01:55,149 [wrapper] ==== pilot stdout END ====
[2025-11-26 18:01:55] 2025-11-26 23:01:55,154 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 18:01:55] 2025-11-26 23:01:55,159 [wrapper] pilotpid: 20202
[2025-11-26 18:01:55] 2025-11-26 23:01:55,164 [wrapper] Pilot exit status: 0
[2025-11-26 18:01:55] 2025-11-26 23:01:55,180 [wrapper] pandaids: 6896450458
[2025-11-26 18:01:55] 2025-11-26 23:01:55,224 [wrapper] cleanup supervisor_pilot 11803 20203
[2025-11-26 18:01:55] 2025-11-26 23:01:55,229 [wrapper] Test setup, not cleaning
[2025-11-26 18:01:55] 2025-11-26 23:01:55,234 [wrapper] apfmon messages muted
[2025-11-26 18:01:55] 2025-11-26 23:01:55,239 [wrapper] ==== wrapper stdout END ====
[2025-11-26 18:01:55] 2025-11-26 23:01:55,243 [wrapper] ==== wrapper stderr END ====
[2025-11-26 18:01:55]  *** Error codes and diagnostics ***
[2025-11-26 18:01:55]     "exeErrorCode": 0,
[2025-11-26 18:01:55]     "exeErrorDiag": "",
[2025-11-26 18:01:55]     "pilotErrorCode": 0,
[2025-11-26 18:01:55]     "pilotErrorDiag": "",
[2025-11-26 18:01:55]  *** Listing of results directory ***
[2025-11-26 18:01:55] total 1310360
[2025-11-26 18:01:55] -rw-r--r-- 1 boincer umatlas    576529 Nov 24 22:04 pilot3.tar.gz
[2025-11-26 18:01:55] -rwx------ 1 boincer umatlas     36292 Nov 24 22:46 runpilot2-wrapper.sh
[2025-11-26 18:01:55] -rw-r--r-- 1 boincer umatlas      5112 Nov 24 22:46 queuedata.json
[2025-11-26 18:01:55] -rw-r--r-- 1 boincer umatlas       100 Nov 26 06:51 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 18:01:55] -rwxr-xr-x 1 boincer umatlas      7986 Nov 26 06:51 run_atlas
[2025-11-26 18:01:55] -rw-r--r-- 1 boincer umatlas       105 Nov 26 06:51 job.xml
[2025-11-26 18:01:55] -rw-r--r-- 2 boincer umatlas 406174199 Nov 26 06:51 EVNT.47483658._002078.pool.root.1
[2025-11-26 18:01:55] -rw-r--r-- 2 boincer umatlas     15847 Nov 26 06:51 start_atlas.sh
[2025-11-26 18:01:55] drwxrwx--x 2 boincer umatlas      4096 Nov 26 06:51 shared
[2025-11-26 18:01:55] -rw-r--r-- 2 boincer umatlas    590103 Nov 26 06:51 input.tar.gz
[2025-11-26 18:01:55] -rw-r--r-- 1 boincer umatlas         0 Nov 26 06:51 boinc_lockfile
[2025-11-26 18:01:55] -rw-r--r-- 1 boincer umatlas      2784 Nov 26 06:51 pandaJob.out
[2025-11-26 18:01:55] -rw------- 1 boincer umatlas        57 Nov 26 06:51 setup.sh.local
[2025-11-26 18:01:55] -rw------- 1 boincer umatlas    991830 Nov 26 06:51 agis_schedconf.cvmfs.json
[2025-11-26 18:01:55] drwx------ 5 boincer umatlas      4096 Nov 26 06:51 pilot3
[2025-11-26 18:01:55] -rw-r--r-- 1 boincer umatlas       533 Nov 26 17:50 boinc_task_state.xml
[2025-11-26 18:01:55] -rw-r--r-- 1 boincer umatlas      5912 Nov 26 17:54 init_data.xml
[2025-11-26 18:01:55] -rw------- 1 boincer umatlas 916854571 Nov 26 18:00 HITS.47556161._000615.pool.root.1
[2025-11-26 18:01:55] -rw------- 1 boincer umatlas        95 Nov 26 18:01 pilot_heartbeat.json
[2025-11-26 18:01:55] -rw------- 1 boincer umatlas      1063 Nov 26 18:01 memory_monitor_summary.json
[2025-11-26 18:01:55] -rw------- 1 boincer umatlas   1516240 Nov 26 18:01 agis_ddmendpoints.agis.ALL.json
[2025-11-26 18:01:55] -rw------- 1 boincer umatlas   1909956 Nov 26 18:01 log.47556161._000615.job.log.tgz.1
[2025-11-26 18:01:55] -rw------- 1 boincer umatlas      8669 Nov 26 18:01 heartbeat.json
[2025-11-26 18:01:55] -rw-r--r-- 1 boincer umatlas      8192 Nov 26 18:01 boinc_mmap_file
[2025-11-26 18:01:55] -rw-r--r-- 1 boincer umatlas        29 Nov 26 18:01 wrapper_checkpoint.txt
[2025-11-26 18:01:55] -rw------- 1 boincer umatlas       745 Nov 26 18:01 pilotlog.txt
[2025-11-26 18:01:55] -rw------- 1 boincer umatlas   5520643 Nov 26 18:01 log.47556161._000615.job.log.1
[2025-11-26 18:01:55] -rw------- 1 boincer umatlas       353 Nov 26 18:01 output.list
[2025-11-26 18:01:55] -rw-r--r-- 1 boincer umatlas       620 Nov 26 18:01 runtime_log
[2025-11-26 18:01:55] -rw------- 1 boincer umatlas   7454720 Nov 26 18:01 result.tar.gz
[2025-11-26 18:01:55] -rw-r--r-- 1 boincer umatlas      9338 Nov 26 18:01 runtime_log.err
[2025-11-26 18:01:55] -rw------- 1 boincer umatlas       666 Nov 26 18:01 mrYNDmXBzh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmx5LKDmzeft2m.diag
[2025-11-26 18:01:55] -rw-r--r-- 1 boincer umatlas     21258 Nov 26 18:01 stderr.txt
[2025-11-26 18:01:55] HITS file was successfully produced:
[2025-11-26 18:01:55] -rw------- 1 boincer umatlas 916854571 Nov 26 18:00 shared/HITS.pool.root.1
[2025-11-26 18:01:55]  *** Contents of shared directory: ***
[2025-11-26 18:01:55] total 1299904
[2025-11-26 18:01:55] -rw-r--r-- 2 boincer umatlas 406174199 Nov 26 06:51 ATLAS.root_0
[2025-11-26 18:01:55] -rw-r--r-- 2 boincer umatlas     15847 Nov 26 06:51 start_atlas.sh
[2025-11-26 18:01:55] -rw-r--r-- 2 boincer umatlas    590103 Nov 26 06:51 input.tar.gz
[2025-11-26 18:01:55] -rw------- 1 boincer umatlas 916854571 Nov 26 18:00 HITS.pool.root.1
[2025-11-26 18:01:55] -rw------- 1 boincer umatlas   7454720 Nov 26 18:01 result.tar.gz
18:01:56 (16507): run_atlas exited; CPU time 311547.142224
18:01:56 (16507): called boinc_finish(0)

</stderr_txt>
]]>

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