Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
05:54:50 (2026533): wrapper (7.7.26015): starting
05:54:50 (2026533): wrapper: running run_atlas (--nthreads 6)
[2025-11-27 05:54:50] Arguments: --nthreads 6
[2025-11-27 05:54:50] Threads: 6
[2025-11-27 05:54:50] Checking for CVMFS
[2025-11-27 05:54:50] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 05:54:50] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 05:54:50] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 05:54:51] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 05:54:51] 2.13.3.0 1560231 2120 73144 153334 3 81 19037972 20971521 916 130560 0 1594857 99.988 83464 16 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.35.143:3126 1
[2025-11-27 05:54:51] CVMFS is ok
[2025-11-27 05:54:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 05:54:51] Checking for apptainer binary...
[2025-11-27 05:54:51] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 05:54:51] Running /usr/bin/apptainer --version
[2025-11-27 05:54:51] apptainer version 1.4.4-1.el9
[2025-11-27 05:54:51] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 05:54:51] testio005
[2025-11-27 05:54:51] apptainer works
[2025-11-27 05:54:51] Set ATHENA_PROC_NUMBER=6
[2025-11-27 05:54:51] Set ATHENA_CORE_NUMBER=6
[2025-11-27 05:54:51] Starting ATLAS job with PandaID=6896296580
[2025-11-27 05:54:51] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 17:27:36]  *** The last 200 lines of the pilot log: ***
[2025-11-27 17:27:36] 2025-11-27 08:27:06,867 | INFO     | extracted standard info from prmon json
[2025-11-27 17:27:36] 2025-11-27 08:27:06,867 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 17:27:36] 2025-11-27 08:27:06,867 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 17:27:36] 2025-11-27 08:27:06,877 | INFO     | fitting pss+swap vs Time
[2025-11-27 17:27:36] 2025-11-27 08:27:06,878 | INFO     | sum of square deviations: 97070396780.0
[2025-11-27 17:27:36] 2025-11-27 08:27:06,888 | INFO     | sum of deviations: 894200603323.9998
[2025-11-27 17:27:36] 2025-11-27 08:27:06,889 | INFO     | mean x: 1764211226.0
[2025-11-27 17:27:36] 2025-11-27 08:27:06,889 | INFO     | mean y: 2654976.708394698
[2025-11-27 17:27:36] 2025-11-27 08:27:06,889 | INFO     | intersect: -16249042708.792435
[2025-11-27 17:27:36] 2025-11-27 08:27:06,890 | INFO     | chi2: 9.430340347630862
[2025-11-27 17:27:36] 2025-11-27 08:27:06,890 | INFO     | sum of square deviations: 94941733612.5
[2025-11-27 17:27:36] 2025-11-27 08:27:06,900 | INFO     | sum of deviations: 1095883339406.0001
[2025-11-27 17:27:36] 2025-11-27 08:27:06,900 | INFO     | mean x: 1764211073.5
[2025-11-27 17:27:36] 2025-11-27 08:27:06,900 | INFO     | mean y: 2669427.6795252226
[2025-11-27 17:27:36] 2025-11-27 08:27:06,901 | INFO     | intersect: -20361078410.917744
[2025-11-27 17:27:36] 2025-11-27 08:27:06,901 | INFO     | chi2: 6.493866948689347
[2025-11-27 17:27:36] 2025-11-27 08:27:06,902 | INFO     | current chi2=6.493866948689347 (change=31.13857284778943 %)
[2025-11-27 17:27:36] 2025-11-27 08:27:06,902 | INFO     | sum of square deviations: 92844419870.0
[2025-11-27 17:27:36] 2025-11-27 08:27:06,912 | INFO     | sum of deviations: 1229524159238.0
[2025-11-27 17:27:36] 2025-11-27 08:27:06,912 | INFO     | mean x: 1764210921.0
[2025-11-27 17:27:36] 2025-11-27 08:27:06,912 | INFO     | mean y: 2679125.9103139015
[2025-11-27 17:27:36] 2025-11-27 08:27:06,912 | INFO     | intersect: -23360490705.924866
[2025-11-27 17:27:36] 2025-11-27 08:27:06,913 | INFO     | chi2: 4.818414590587303
[2025-11-27 17:27:36] 2025-11-27 08:27:06,913 | INFO     | current chi2=4.818414590587303 (change=25.800534124589653 %)
[2025-11-27 17:27:36] 2025-11-27 08:27:06,914 | INFO     | sum of square deviations: 90778222990.0
[2025-11-27 17:27:36] 2025-11-27 08:27:06,924 | INFO     | sum of deviations: 1227113906345.4998
[2025-11-27 17:27:36] 2025-11-27 08:27:06,924 | INFO     | mean x: 1764210768.5
[2025-11-27 17:27:36] 2025-11-27 08:27:06,924 | INFO     | mean y: 2678942.4924698793
[2025-11-27 17:27:36] 2025-11-27 08:27:06,924 | INFO     | intersect: -23845414757.130978
[2025-11-27 17:27:36] 2025-11-27 08:27:06,925 | INFO     | chi2: 4.754490009500818
[2025-11-27 17:27:36] 2025-11-27 08:27:06,925 | INFO     | current chi2=4.754490009500818 (change=1.3266724953755815 %)
[2025-11-27 17:27:36] 2025-11-27 08:27:06,925 | INFO     | right removable region: 663
[2025-11-27 17:27:36] 2025-11-27 08:27:06,926 | INFO     | sum of square deviations: 94941733612.5
[2025-11-27 17:27:36] 2025-11-27 08:27:06,936 | INFO     | sum of deviations: 689531790789.0001
[2025-11-27 17:27:36] 2025-11-27 08:27:06,936 | INFO     | mean x: 1764211378.5
[2025-11-27 17:27:36] 2025-11-27 08:27:06,936 | INFO     | mean y: 2669631.3412462906
[2025-11-27 17:27:36] 2025-11-27 08:27:06,936 | INFO     | intersect: -12810239769.622908
[2025-11-27 17:27:36] 2025-11-27 08:27:06,937 | INFO     | chi2: 6.679417550830539
[2025-11-27 17:27:36] 2025-11-27 08:27:06,937 | INFO     | current chi2=6.679417550830539 (change=29.17098106105389 %)
[2025-11-27 17:27:36] 2025-11-27 08:27:06,938 | INFO     | sum of square deviations: 92844419870.0
[2025-11-27 17:27:36] 2025-11-27 08:27:06,946 | INFO     | sum of deviations: 527830164109.9998
[2025-11-27 17:27:36] 2025-11-27 08:27:06,947 | INFO     | mean x: 1764211531.0
[2025-11-27 17:27:36] 2025-11-27 08:27:06,947 | INFO     | mean y: 2681385.052316891
[2025-11-27 17:27:36] 2025-11-27 08:27:06,947 | INFO     | intersect: -10027044291.906496
[2025-11-27 17:27:36] 2025-11-27 08:27:06,948 | INFO     | chi2: 5.098273031926817
[2025-11-27 17:27:36] 2025-11-27 08:27:06,948 | INFO     | current chi2=5.098273031926817 (change=23.671892150343535 %)
[2025-11-27 17:27:36] 2025-11-27 08:27:06,948 | INFO     | left removable region: 20
[2025-11-27 17:27:36] 2025-11-27 08:27:06,949 | INFO     | sum of square deviations: 82434743762.0
[2025-11-27 17:27:36] 2025-11-27 08:27:06,957 | INFO     | sum of deviations: 790382168224.9999
[2025-11-27 17:27:36] 2025-11-27 08:27:06,958 | INFO     | mean x: 1764211348.0
[2025-11-27 17:27:36] 2025-11-27 08:27:06,958 | INFO     | mean y: 2711672.874027994
[2025-11-27 17:27:36] 2025-11-27 08:27:06,958 | INFO     | intersect: -16912500612.678898
[2025-11-27 17:27:36] 2025-11-27 08:27:06,959 | INFO     | chi2: 0.2183534025010788
[2025-11-27 17:27:36] 2025-11-27 08:27:06,959 | INFO     | current memory leak: 9.59 B/s (using 643 data points, chi2=0.22)
[2025-11-27 17:27:36] 2025-11-27 08:27:06,960 | INFO     | could have reported an average CPU frequency of 3288 MHz (25 samples)
[2025-11-27 17:27:36] 2025-11-27 08:27:06,960 | INFO     | ..............................
[2025-11-27 17:27:36] 2025-11-27 08:27:06,960 | INFO     | . Timing measurements:
[2025-11-27 17:27:36] 2025-11-27 08:27:06,960 | INFO     | . get job = 0 s
[2025-11-27 17:27:36] 2025-11-27 08:27:06,960 | INFO     | . initial setup = 22 s
[2025-11-27 17:27:36] 2025-11-27 08:27:06,960 | INFO     | . payload setup = 5 s
[2025-11-27 17:27:36] 2025-11-27 08:27:06,960 | INFO     | . stage-in = 0 s
[2025-11-27 17:27:36] 2025-11-27 08:27:06,960 | INFO     | . payload execution = 41408 s
[2025-11-27 17:27:36] 2025-11-27 08:27:06,960 | INFO     | . stage-out = 7 s
[2025-11-27 17:27:36] 2025-11-27 08:27:06,960 | INFO     | . log creation = 0 s
[2025-11-27 17:27:36] 2025-11-27 08:27:06,961 | INFO     | ..............................
[2025-11-27 17:27:36] 2025-11-27 08:27:07,051 | INFO     | 
[2025-11-27 17:27:36] 2025-11-27 08:27:07,051 | INFO     | job summary report
[2025-11-27 17:27:36] 2025-11-27 08:27:07,051 | INFO     | --------------------------------------------------
[2025-11-27 17:27:36] 2025-11-27 08:27:07,052 | INFO     | PanDA job id: 6896296580
[2025-11-27 17:27:36] 2025-11-27 08:27:07,052 | INFO     | task id: 47556161
[2025-11-27 17:27:36] 2025-11-27 08:27:07,052 | INFO     | errors: (none)
[2025-11-27 17:27:36] 2025-11-27 08:27:07,052 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 17:27:36] 2025-11-27 08:27:07,052 | INFO     | pilot state: finished 
[2025-11-27 17:27:36] 2025-11-27 08:27:07,052 | INFO     | transexitcode: 0
[2025-11-27 17:27:36] 2025-11-27 08:27:07,052 | INFO     | exeerrorcode: 0
[2025-11-27 17:27:36] 2025-11-27 08:27:07,052 | INFO     | exeerrordiag: 
[2025-11-27 17:27:36] 2025-11-27 08:27:07,052 | INFO     | exitcode: 0
[2025-11-27 17:27:36] 2025-11-27 08:27:07,052 | INFO     | exitmsg: OK
[2025-11-27 17:27:36] 2025-11-27 08:27:07,052 | INFO     | cpuconsumptiontime: 233043 s
[2025-11-27 17:27:36] 2025-11-27 08:27:07,052 | INFO     | nevents: 1000
[2025-11-27 17:27:36] 2025-11-27 08:27:07,052 | INFO     | neventsw: 0
[2025-11-27 17:27:36] 2025-11-27 08:27:07,052 | INFO     | pid: 2037005
[2025-11-27 17:27:36] 2025-11-27 08:27:07,053 | INFO     | pgrp: 2037005
[2025-11-27 17:27:36] 2025-11-27 08:27:07,053 | INFO     | corecount: 6
[2025-11-27 17:27:36] 2025-11-27 08:27:07,053 | INFO     | event service: False
[2025-11-27 17:27:36] 2025-11-27 08:27:07,053 | INFO     | sizes: {0: 2283434, 1: 2284290, 5: 2284552, 12: 2284608, 41418: 2328204, 41425: 2337198, 41429: 2337382, 41491: 2337692}
[2025-11-27 17:27:36] 2025-11-27 08:27:07,053 | INFO     | --------------------------------------------------
[2025-11-27 17:27:36] 2025-11-27 08:27:07,053 | INFO     | 
[2025-11-27 17:27:36] 2025-11-27 08:27:07,053 | INFO     | executing command: ls -lF /var/lib/boinc/slots/4
[2025-11-27 17:27:36] 2025-11-27 08:27:07,071 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 17:27:36] 2025-11-27 08:27:07,072 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 17:27:36] 2025-11-27 08:27:07,072 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 17:27:36] 2025-11-27 08:27:07,072 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 17:27:36] 2025-11-27 08:27:07,072 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 17:27:36] 2025-11-27 08:27:07,072 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 17:27:36] 2025-11-27 08:27:07,072 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 17:27:36] 2025-11-27 08:27:07,072 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 17:27:36] 2025-11-27 08:27:07,072 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 17:27:36] 2025-11-27 08:27:07,073 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 17:27:36] 2025-11-27 08:27:07,073 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 17:27:36] 2025-11-27 08:27:07,073 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 17:27:36] 2025-11-27 08:27:07,073 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 17:27:36] 2025-11-27 08:27:07,073 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 17:27:36] 2025-11-27 08:27:07,073 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 17:27:36] 2025-11-27 08:27:07,073 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 17:27:36] 2025-11-27 08:27:07,073 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 17:27:36] 2025-11-27 08:27:07,073 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 17:27:36] 2025-11-27 08:27:07,073 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 17:27:36] 2025-11-27 08:27:07,074 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 17:27:36] 2025-11-27 08:27:07,074 | INFO     | job 6896296580 has completed (purged errors)
[2025-11-27 17:27:36] 2025-11-27 08:27:07,074 | INFO     | overall cleanup function is called
[2025-11-27 17:27:36] 2025-11-27 08:27:08,088 | INFO     | --- collectZombieJob: --- 10, [2037005]
[2025-11-27 17:27:36] 2025-11-27 08:27:08,088 | INFO     | zombie collector waiting for pid 2037005
[2025-11-27 17:27:36] 2025-11-27 08:27:08,088 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 17:27:36] 2025-11-27 08:27:08,088 | INFO     | collected zombie processes
[2025-11-27 17:27:36] 2025-11-27 08:27:08,088 | INFO     | will attempt to kill all subprocesses of pid=2037005
[2025-11-27 17:27:36] 2025-11-27 08:27:08,195 | INFO     | process IDs to be killed: [2037005] (in reverse order)
[2025-11-27 17:27:36] 2025-11-27 08:27:08,242 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 17:27:36] 2025-11-27 08:27:08,243 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 17:27:36] 2025-11-27 08:27:08,246 | INFO     | did not find any defunct processes belonging to 2037005
[2025-11-27 17:27:36] 2025-11-27 08:27:08,249 | INFO     | did not find any defunct processes belonging to 2037005
[2025-11-27 17:27:36] 2025-11-27 08:27:08,250 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 17:27:36] 2025-11-27 08:27:08,251 | INFO     | ready for new job
[2025-11-27 17:27:36] 2025-11-27 08:27:08,251 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 17:27:36] 2025-11-27 08:27:08,253 | INFO     | ***************************************
[2025-11-27 17:27:36] 2025-11-27 08:27:08,253 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 17:27:36] 2025-11-27 08:27:08,253 | INFO     | ***************************************
[2025-11-27 17:27:36] 2025-11-27 08:27:08,253 | INFO     | 
[2025-11-27 17:27:36] 2025-11-27 08:27:08,255 | INFO     | architecture information:
[2025-11-27 17:27:36] 2025-11-27 08:27:08,255 | INFO     | executing command: cat /etc/os-release
[2025-11-27 17:27:36] 2025-11-27 08:27:08,269 | INFO     | cat /etc/os-release:
[2025-11-27 17:27:36] NAME="CentOS Linux"
[2025-11-27 17:27:36] VERSION="7 (Core)"
[2025-11-27 17:27:36] ID="centos"
[2025-11-27 17:27:36] ID_LIKE="rhel fedora"
[2025-11-27 17:27:36] VERSION_ID="7"
[2025-11-27 17:27:36] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 17:27:36] ANSI_COLOR="0;31"
[2025-11-27 17:27:36] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 17:27:36] HOME_URL="https://www.centos.org/"
[2025-11-27 17:27:36] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 17:27:36] 
[2025-11-27 17:27:36] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 17:27:36] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 17:27:36] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 17:27:36] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 17:27:36] 
[2025-11-27 17:27:36] 2025-11-27 08:27:08,269 | INFO     | ***************************************
[2025-11-27 17:27:36] 2025-11-27 08:27:08,772 | INFO     | executing command: df -mP /var/lib/boinc/slots/4
[2025-11-27 17:27:36] 2025-11-27 08:27:08,788 | INFO     | sufficient remaining disk space (88705335296 B)
[2025-11-27 17:27:36] 2025-11-27 08:27:08,788 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 17:27:36] 2025-11-27 08:27:08,788 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 17:27:36] 2025-11-27 08:27:08,788 | INFO     | update_server=False
[2025-11-27 17:27:36] 2025-11-27 08:27:08,788 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 17:27:36] 2025-11-27 08:27:08,789 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-11-27 17:27:36] 2025-11-27 08:27:08,789 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 17:27:36] 2025-11-27 08:27:08,789 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 17:27:36] 2025-11-27 08:27:08,789 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 17:27:36] 2025-11-27 08:27:08,789 | INFO     | aborting loop
[2025-11-27 17:27:36] 2025-11-27 08:27:08,789 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 17:27:36] 2025-11-27 08:27:08,790 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 17:27:36] 2025-11-27 08:27:08,911 | INFO     | all payload control threads have been joined
[2025-11-27 17:27:36] 2025-11-27 08:27:09,004 | INFO     | all data control threads have been joined
[2025-11-27 17:27:36] 2025-11-27 08:27:09,439 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 17:27:36] 2025-11-27 08:27:09,668 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 17:27:36] 2025-11-27 08:27:09,794 | INFO     | [job] job monitor thread has finished
[2025-11-27 17:27:36] 2025-11-27 08:27:09,794 | INFO     | [job] retrieve thread has finished
[2025-11-27 17:27:36] 2025-11-27 08:27:09,795 | INFO     | [job] queue monitor thread has finished
[2025-11-27 17:27:36] 2025-11-27 08:27:09,837 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 17:27:36] 2025-11-27 08:27:09,914 | INFO     | [payload] control thread has finished
[2025-11-27 17:27:36] 2025-11-27 08:27:09,925 | INFO     | all job control threads have been joined
[2025-11-27 17:27:36] 2025-11-27 08:27:09,984 | INFO     | [data] copytool_in thread has finished
[2025-11-27 17:27:36] 2025-11-27 08:27:10,009 | INFO     | [data] control thread has finished
[2025-11-27 17:27:36] 2025-11-27 08:27:10,136 | INFO     | [job] validate thread has finished
[2025-11-27 17:27:36] 2025-11-27 08:27:10,139 | INFO     | [payload] validate_post thread has finished
[2025-11-27 17:27:36] 2025-11-27 08:27:10,365 | INFO     | [payload] failed_post thread has finished
[2025-11-27 17:27:36] 2025-11-27 08:27:10,565 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 17:27:36] 2025-11-27 08:27:10,624 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 17:27:36] 2025-11-27 08:27:10,726 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 17:27:36] 2025-11-27 08:27:10,927 | INFO     | [job] control thread has finished
[2025-11-27 17:27:36] 2025-11-27 08:27:11,674 | INFO     | [data] copytool_out thread has finished
[2025-11-27 17:27:36] 2025-11-27 08:27:13,448 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 17:27:36] 2025-11-27 08:27:30,712 | INFO     | [monitor] cgroup control has ended
[2025-11-27 17:27:36] 2025-11-27 08:27:31,134 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140695287363392)>', '<ExcThread(monitor, started 140694647719680)>']
[2025-11-27 17:27:36] 2025-11-27 08:27:31,890 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 17:27:36] 2025-11-27 08:27:31,890 | INFO     | [monitor] control thread has ended
[2025-11-27 17:27:36] 2025-11-27 08:27:36,156 | INFO     | all workflow threads have been joined
[2025-11-27 17:27:36] 2025-11-27 08:27:36,156 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 17:27:36] 2025-11-27 08:27:36,157 | INFO     | traces error code: 0
[2025-11-27 17:27:36] 2025-11-27 08:27:36,157 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 17:27:36] 2025-11-27 08:27:36,265 [wrapper] ==== pilot stdout END ====
[2025-11-27 17:27:36] 2025-11-27 08:27:36,269 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 17:27:36] 2025-11-27 08:27:36,271 [wrapper] pilotpid: 2030297
[2025-11-27 17:27:36] 2025-11-27 08:27:36,274 [wrapper] Pilot exit status: 0
[2025-11-27 17:27:36] 2025-11-27 08:27:36,284 [wrapper] pandaids: 6896296580
[2025-11-27 17:27:36] 2025-11-27 08:27:36,310 [wrapper] cleanup supervisor_pilot 2172366 2030298
[2025-11-27 17:27:36] 2025-11-27 08:27:36,313 [wrapper] Test setup, not cleaning
[2025-11-27 17:27:36] 2025-11-27 08:27:36,316 [wrapper] apfmon messages muted
[2025-11-27 17:27:36] 2025-11-27 08:27:36,318 [wrapper] ==== wrapper stdout END ====
[2025-11-27 17:27:36] 2025-11-27 08:27:36,321 [wrapper] ==== wrapper stderr END ====
[2025-11-27 17:27:36]  *** Error codes and diagnostics ***
[2025-11-27 17:27:36]     "exeErrorCode": 0,
[2025-11-27 17:27:36]     "exeErrorDiag": "",
[2025-11-27 17:27:36]     "pilotErrorCode": 0,
[2025-11-27 17:27:36]     "pilotErrorDiag": "",
[2025-11-27 17:27:36]  *** Listing of results directory ***
[2025-11-27 17:27:36] total 1306624
[2025-11-27 17:27:36] -rw-r--r--. 1 boinc boinc      5112 Nov 25 09:10 queuedata.json
[2025-11-27 17:27:36] -rw-r--r--. 1 boinc boinc    576529 Nov 25 09:10 pilot3.tar.gz
[2025-11-27 17:27:36] -rwx------. 1 boinc boinc     36292 Nov 25 09:12 runpilot2-wrapper.sh
[2025-11-27 17:27:36] -rw-r--r--. 1 boinc boinc       100 Nov 27 05:54 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 17:27:36] -rwxr-xr-x. 1 boinc boinc      7986 Nov 27 05:54 run_atlas
[2025-11-27 17:27:36] -rw-r--r--. 1 boinc boinc       105 Nov 27 05:54 job.xml
[2025-11-27 17:27:36] -rw-r--r--. 2 boinc boinc 409326309 Nov 27 05:54 EVNT.47483658._002069.pool.root.1
[2025-11-27 17:27:36] -rw-r--r--. 2 boinc boinc     15847 Nov 27 05:54 start_atlas.sh
[2025-11-27 17:27:36] drwxrwx--x. 2 boinc boinc        68 Nov 27 05:54 shared
[2025-11-27 17:27:36] -rw-r--r--. 2 boinc boinc    590102 Nov 27 05:54 input.tar.gz
[2025-11-27 17:27:36] -rw-r--r--. 1 boinc boinc         0 Nov 27 05:54 boinc_lockfile
[2025-11-27 17:27:36] -rw-r--r--. 1 boinc boinc      2784 Nov 27 05:54 pandaJob.out
[2025-11-27 17:27:36] -rw-------. 1 boinc boinc    991538 Nov 27 05:55 agis_schedconf.cvmfs.json
[2025-11-27 17:27:36] drwx------. 5 boinc boinc      4096 Nov 27 05:55 pilot3
[2025-11-27 17:27:36] -rw-r--r--. 1 boinc boinc      9370 Nov 27 07:05 init_data.xml
[2025-11-27 17:27:36] -rw-r--r--. 1 boinc boinc       533 Nov 27 17:14 boinc_task_state.xml
[2025-11-27 17:27:36] -rw-------. 1 boinc boinc 909808873 Nov 27 17:25 HITS.47556161._000529.pool.root.1
[2025-11-27 17:27:36] -rw-------. 1 boinc boinc      1033 Nov 27 17:25 memory_monitor_summary.json
[2025-11-27 17:27:36] -rw-------. 1 boinc boinc   1516240 Nov 27 17:26 agis_ddmendpoints.agis.ALL.json
[2025-11-27 17:27:36] -rw-------. 1 boinc boinc   1703876 Nov 27 17:26 log.47556161._000529.job.log.tgz.1
[2025-11-27 17:27:36] -rw-------. 1 boinc boinc      8576 Nov 27 17:27 heartbeat.json
[2025-11-27 17:27:36] -rw-------. 1 boinc boinc        95 Nov 27 17:27 pilot_heartbeat.json
[2025-11-27 17:27:36] -rw-r--r--. 1 boinc boinc        29 Nov 27 17:27 wrapper_checkpoint.txt
[2025-11-27 17:27:36] -rw-r--r--. 1 boinc boinc      8192 Nov 27 17:27 boinc_mmap_file
[2025-11-27 17:27:36] -rw-------. 1 boinc boinc      4552 Nov 27 17:27 pilotlog.txt
[2025-11-27 17:27:36] -rw-------. 1 boinc boinc   5765456 Nov 27 17:27 log.47556161._000529.job.log.1
[2025-11-27 17:27:36] -rw-------. 1 boinc boinc       353 Nov 27 17:27 output.list
[2025-11-27 17:27:36] -rw-r--r--. 1 boinc boinc       620 Nov 27 17:27 runtime_log
[2025-11-27 17:27:36] -rw-------. 1 boinc boinc   7485440 Nov 27 17:27 result.tar.gz
[2025-11-27 17:27:36] -rw-r--r--. 1 boinc boinc      8776 Nov 27 17:27 runtime_log.err
[2025-11-27 17:27:36] -rw-------. 1 boinc boinc       652 Nov 27 17:27 Q2aNDm6qvh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm7zLKDm8PYOdm.diag
[2025-11-27 17:27:36] -rw-r--r--. 1 boinc boinc     20658 Nov 27 17:27 stderr.txt
[2025-11-27 17:27:36] HITS file was successfully produced:
[2025-11-27 17:27:36] -rw-------. 1 boinc boinc 909808873 Nov 27 17:25 shared/HITS.pool.root.1
[2025-11-27 17:27:36]  *** Contents of shared directory: ***
[2025-11-27 17:27:36] total 1296132
[2025-11-27 17:27:36] -rw-r--r--. 2 boinc boinc 409326309 Nov 27 05:54 ATLAS.root_0
[2025-11-27 17:27:36] -rw-r--r--. 2 boinc boinc     15847 Nov 27 05:54 start_atlas.sh
[2025-11-27 17:27:36] -rw-r--r--. 2 boinc boinc    590102 Nov 27 05:54 input.tar.gz
[2025-11-27 17:27:36] -rw-------. 1 boinc boinc 909808873 Nov 27 17:25 HITS.pool.root.1
[2025-11-27 17:27:36] -rw-------. 1 boinc boinc   7485440 Nov 27 17:27 result.tar.gz
17:27:37 (2026533): run_atlas exited; CPU time 233048.673379
17:27:37 (2026533): called boinc_finish(0)

</stderr_txt>
]]>

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