Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
06:40:21 (4106): wrapper (7.7.26015): starting
06:40:21 (4106): wrapper: running run_atlas (--nthreads 12)
[2025-11-26 06:40:21] Arguments: --nthreads 12
[2025-11-26 06:40:21] Threads: 12
[2025-11-26 06:40:21] Checking for CVMFS
[2025-11-26 06:40:22] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 06:40:22] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 06:40:22] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 06:40:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 06:40:22] 2.11.2.0 2998 287587 94540 153320 1 82 17917877 20275200 1 130560 1 129525577 99.967 16910816 14532 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-26 06:40:22] CVMFS is ok
[2025-11-26 06:40:22] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 06:40:22] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 06:40:22] Further information can be found at the LHC@home message board.
[2025-11-26 06:40:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 06:40:22] Checking for apptainer binary...
[2025-11-26 06:40:22] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 06:40:22] Running /usr/bin/apptainer --version
[2025-11-26 06:40:22] apptainer version 1.3.2-1.el7
[2025-11-26 06:40:22] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 06:40:23] c-205-25.aglt2.org
[2025-11-26 06:40:23] apptainer works
[2025-11-26 06:40:23] Set ATHENA_PROC_NUMBER=12
[2025-11-26 06:40:23] Set ATHENA_CORE_NUMBER=12
[2025-11-26 06:40:23] Starting ATLAS job with PandaID=6891588205
[2025-11-26 06:40:23] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 13:58:43]  *** The last 200 lines of the pilot log: ***
[2025-11-26 13:58:43] 2025-11-26 18:58:08,960 | INFO     | PID=7787 has CPU usage=12.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-26 13:58:43] 2025-11-26 18:58:09,549 | INFO     | monitor loop #1967: job 0:6891588205 is in state 'finished'
[2025-11-26 13:58:43] 2025-11-26 18:58:09,549 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 13:58:43] 2025-11-26 18:58:09,961 | INFO     | time since job start (26251s) is within the limit (172800.0s)
[2025-11-26 13:58:43] 2025-11-26 18:58:11,049 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-26 13:58:43] 2025-11-26 18:58:11,053 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1684.75
[2025-11-26 13:58:43] 2025-11-26 18:58:11,056 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6891588205/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 13:58:43] 2025-11-26 18:58:11,056 | INFO     | extracted standard info from prmon json
[2025-11-26 13:58:43] 2025-11-26 18:58:11,056 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 13:58:43] 2025-11-26 18:58:11,056 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 13:58:43] 2025-11-26 18:58:11,063 | INFO     | fitting pss+swap vs Time
[2025-11-26 13:58:43] 2025-11-26 18:58:11,064 | INFO     | sum of square deviations: 24653475659.816364
[2025-11-26 13:58:43] 2025-11-26 18:58:11,068 | INFO     | sum of deviations: 406279479048.49304
[2025-11-26 13:58:43] 2025-11-26 18:58:11,068 | INFO     | mean x: 1764170351.7139535
[2025-11-26 13:58:43] 2025-11-26 18:58:11,068 | INFO     | mean y: 3434293.451162791
[2025-11-26 13:58:43] 2025-11-26 18:58:11,068 | INFO     | intersect: -29069391840.16348
[2025-11-26 13:58:43] 2025-11-26 18:58:11,069 | INFO     | chi2: 5.253003915464895
[2025-11-26 13:58:43] 2025-11-26 18:58:11,069 | INFO     | sum of square deviations: 23803450572.08471
[2025-11-26 13:58:43] 2025-11-26 18:58:11,074 | INFO     | sum of deviations: 556782629790.181
[2025-11-26 13:58:43] 2025-11-26 18:58:11,074 | INFO     | mean x: 1764170199.2164705
[2025-11-26 13:58:43] 2025-11-26 18:58:11,074 | INFO     | mean y: 3461262.574117647
[2025-11-26 13:58:43] 2025-11-26 18:58:11,074 | INFO     | intersect: -41261956116.41505
[2025-11-26 13:58:43] 2025-11-26 18:58:11,075 | INFO     | chi2: 2.6634662535248865
[2025-11-26 13:58:43] 2025-11-26 18:58:11,075 | INFO     | current chi2=2.6634662535248865 (change=49.29632080258657 %)
[2025-11-26 13:58:43] 2025-11-26 18:58:11,075 | INFO     | sum of square deviations: 22973193296.847443
[2025-11-26 13:58:43] 2025-11-26 18:58:11,079 | INFO     | sum of deviations: 592330909835.1333
[2025-11-26 13:58:43] 2025-11-26 18:58:11,079 | INFO     | mean x: 1764170046.7190475
[2025-11-26 13:58:43] 2025-11-26 18:58:11,079 | INFO     | mean y: 3467752.933333333
[2025-11-26 13:58:43] 2025-11-26 18:58:11,079 | INFO     | intersect: -45483132014.64805
[2025-11-26 13:58:43] 2025-11-26 18:58:11,080 | INFO     | chi2: 2.319978705250693
[2025-11-26 13:58:43] 2025-11-26 18:58:11,080 | INFO     | current chi2=2.319978705250693 (change=12.896260570961434 %)
[2025-11-26 13:58:43] 2025-11-26 18:58:11,080 | INFO     | right removable region: 419
[2025-11-26 13:58:43] 2025-11-26 18:58:11,081 | INFO     | sum of square deviations: 23803394452.084717
[2025-11-26 13:58:43] 2025-11-26 18:58:11,084 | INFO     | sum of deviations: 274397412871.21155
[2025-11-26 13:58:43] 2025-11-26 18:58:11,085 | INFO     | mean x: 1764170504.2164705
[2025-11-26 13:58:43] 2025-11-26 18:58:11,085 | INFO     | mean y: 3457868.5411764705
[2025-11-26 13:58:43] 2025-11-26 18:58:11,085 | INFO     | intersect: -20333298017.059162
[2025-11-26 13:58:43] 2025-11-26 18:58:11,085 | INFO     | chi2: 3.094975060863835
[2025-11-26 13:58:43] 2025-11-26 18:58:11,085 | INFO     | current chi2=3.094975060863835 (change=41.081805559820765 %)
[2025-11-26 13:58:43] 2025-11-26 18:58:11,086 | INFO     | sum of square deviations: 22973081056.847443
[2025-11-26 13:58:43] 2025-11-26 18:58:11,090 | INFO     | sum of deviations: 240437047841.0568
[2025-11-26 13:58:43] 2025-11-26 18:58:11,090 | INFO     | mean x: 1764170656.7190475
[2025-11-26 13:58:43] 2025-11-26 18:58:11,090 | INFO     | mean y: 3464099.5428571426
[2025-11-26 13:58:43] 2025-11-26 18:58:11,090 | INFO     | intersect: -18460406007.375862
[2025-11-26 13:58:43] 2025-11-26 18:58:11,091 | INFO     | chi2: 3.039928129078211
[2025-11-26 13:58:43] 2025-11-26 18:58:11,091 | INFO     | current chi2=3.039928129078211 (change=1.7785904798295873 %)
[2025-11-26 13:58:43] 2025-11-26 18:58:11,091 | INFO     | left removable region: 20
[2025-11-26 13:58:43] 2025-11-26 18:58:11,091 | INFO     | sum of square deviations: 19696504545.699112
[2025-11-26 13:58:43] 2025-11-26 18:58:11,095 | INFO     | sum of deviations: 382937571219.7895
[2025-11-26 13:58:43] 2025-11-26 18:58:11,095 | INFO     | mean x: 1764170626.225564
[2025-11-26 13:58:43] 2025-11-26 18:58:11,095 | INFO     | mean y: 3506832.1578947366
[2025-11-26 13:58:43] 2025-11-26 18:58:11,095 | INFO     | intersect: -34295330977.19483
[2025-11-26 13:58:43] 2025-11-26 18:58:11,096 | INFO     | chi2: 0.07064635999468227
[2025-11-26 13:58:43] 2025-11-26 18:58:11,096 | INFO     | current memory leak: 19.44 B/s (using 399 data points, chi2=0.07)
[2025-11-26 13:58:43] 2025-11-26 18:58:11,096 | INFO     | could have reported an average CPU frequency of 2408 MHz (18 samples)
[2025-11-26 13:58:43] 2025-11-26 18:58:11,097 | INFO     | ..............................
[2025-11-26 13:58:43] 2025-11-26 18:58:11,097 | INFO     | . Timing measurements:
[2025-11-26 13:58:43] 2025-11-26 18:58:11,097 | INFO     | . get job = 0 s
[2025-11-26 13:58:43] 2025-11-26 18:58:11,097 | INFO     | . initial setup = 2 s
[2025-11-26 13:58:43] 2025-11-26 18:58:11,097 | INFO     | . payload setup = 7 s
[2025-11-26 13:58:43] 2025-11-26 18:58:11,097 | INFO     | . stage-in = 0 s
[2025-11-26 13:58:43] 2025-11-26 18:58:11,097 | INFO     | . payload execution = 26214 s
[2025-11-26 13:58:43] 2025-11-26 18:58:11,097 | INFO     | . stage-out = 3 s
[2025-11-26 13:58:43] 2025-11-26 18:58:11,098 | INFO     | . log creation = 0 s
[2025-11-26 13:58:43] 2025-11-26 18:58:11,098 | INFO     | ..............................
[2025-11-26 13:58:43] 2025-11-26 18:58:11,598 | INFO     | 
[2025-11-26 13:58:43] 2025-11-26 18:58:11,598 | INFO     | job summary report
[2025-11-26 13:58:43] 2025-11-26 18:58:11,598 | INFO     | --------------------------------------------------
[2025-11-26 13:58:43] 2025-11-26 18:58:11,598 | INFO     | PanDA job id: 6891588205
[2025-11-26 13:58:43] 2025-11-26 18:58:11,598 | INFO     | task id: 47493068
[2025-11-26 13:58:43] 2025-11-26 18:58:11,599 | INFO     | errors: (none)
[2025-11-26 13:58:43] 2025-11-26 18:58:11,599 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 13:58:43] 2025-11-26 18:58:11,599 | INFO     | pilot state: finished 
[2025-11-26 13:58:43] 2025-11-26 18:58:11,599 | INFO     | transexitcode: 0
[2025-11-26 13:58:43] 2025-11-26 18:58:11,599 | INFO     | exeerrorcode: 0
[2025-11-26 13:58:43] 2025-11-26 18:58:11,599 | INFO     | exeerrordiag: 
[2025-11-26 13:58:43] 2025-11-26 18:58:11,600 | INFO     | exitcode: 0
[2025-11-26 13:58:43] 2025-11-26 18:58:11,600 | INFO     | exitmsg: OK
[2025-11-26 13:58:43] 2025-11-26 18:58:11,600 | INFO     | cpuconsumptiontime: 300312 s
[2025-11-26 13:58:43] 2025-11-26 18:58:11,600 | INFO     | nevents: 1000
[2025-11-26 13:58:43] 2025-11-26 18:58:11,600 | INFO     | neventsw: 0
[2025-11-26 13:58:43] 2025-11-26 18:58:11,601 | INFO     | pid: 14194
[2025-11-26 13:58:43] 2025-11-26 18:58:11,601 | INFO     | pgrp: 14194
[2025-11-26 13:58:43] 2025-11-26 18:58:11,601 | INFO     | corecount: 12
[2025-11-26 13:58:43] 2025-11-26 18:58:11,601 | INFO     | event service: False
[2025-11-26 13:58:43] 2025-11-26 18:58:11,601 | INFO     | sizes: {0: 2284304, 5: 2284566, 11: 2284622, 26225: 2321988, 26229: 2331010, 26231: 2331066, 26236: 2331440}
[2025-11-26 13:58:43] 2025-11-26 18:58:11,601 | INFO     | --------------------------------------------------
[2025-11-26 13:58:43] 2025-11-26 18:58:11,602 | INFO     | 
[2025-11-26 13:58:43] 2025-11-26 18:58:11,602 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-26 13:58:43] 2025-11-26 18:58:11,625 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 13:58:43] 2025-11-26 18:58:11,625 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 13:58:43] 2025-11-26 18:58:11,625 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 13:58:43] 2025-11-26 18:58:11,625 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 13:58:43] 2025-11-26 18:58:11,625 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 13:58:43] 2025-11-26 18:58:11,626 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 13:58:43] 2025-11-26 18:58:11,626 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 13:58:43] 2025-11-26 18:58:11,626 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 13:58:43] 2025-11-26 18:58:11,626 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 13:58:43] 2025-11-26 18:58:11,626 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 13:58:43] 2025-11-26 18:58:11,627 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 13:58:43] 2025-11-26 18:58:11,627 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 13:58:43] 2025-11-26 18:58:11,627 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 13:58:43] 2025-11-26 18:58:11,627 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 13:58:43] 2025-11-26 18:58:11,627 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 13:58:43] 2025-11-26 18:58:11,627 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 13:58:43] 2025-11-26 18:58:11,628 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 13:58:43] 2025-11-26 18:58:11,628 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 13:58:43] 2025-11-26 18:58:11,628 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 13:58:43] 2025-11-26 18:58:11,628 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 13:58:43] 2025-11-26 18:58:11,628 | INFO     | job 6891588205 has completed (purged errors)
[2025-11-26 13:58:43] 2025-11-26 18:58:11,629 | INFO     | overall cleanup function is called
[2025-11-26 13:58:43] 2025-11-26 18:58:12,645 | INFO     | --- collectZombieJob: --- 10, [14194]
[2025-11-26 13:58:43] 2025-11-26 18:58:12,645 | INFO     | zombie collector waiting for pid 14194
[2025-11-26 13:58:43] 2025-11-26 18:58:12,645 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 13:58:43] 2025-11-26 18:58:12,645 | INFO     | collected zombie processes
[2025-11-26 13:58:43] 2025-11-26 18:58:12,645 | INFO     | will attempt to kill all subprocesses of pid=14194
[2025-11-26 13:58:43] 2025-11-26 18:58:12,738 | INFO     | process IDs to be killed: [14194] (in reverse order)
[2025-11-26 13:58:43] 2025-11-26 18:58:12,792 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 13:58:43] 2025-11-26 18:58:12,792 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 13:58:43] 2025-11-26 18:58:12,796 | INFO     | did not find any defunct processes belonging to 14194
[2025-11-26 13:58:43] 2025-11-26 18:58:12,799 | INFO     | did not find any defunct processes belonging to 14194
[2025-11-26 13:58:43] 2025-11-26 18:58:12,801 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 13:58:43] 2025-11-26 18:58:12,801 | INFO     | ready for new job
[2025-11-26 13:58:43] 2025-11-26 18:58:12,802 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 13:58:43] 2025-11-26 18:58:12,804 | INFO     | ***************************************
[2025-11-26 13:58:43] 2025-11-26 18:58:12,805 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 13:58:43] 2025-11-26 18:58:12,805 | INFO     | ***************************************
[2025-11-26 13:58:43] 2025-11-26 18:58:12,805 | INFO     | 
[2025-11-26 13:58:43] 2025-11-26 18:58:12,805 | INFO     | architecture information:
[2025-11-26 13:58:43] 2025-11-26 18:58:12,806 | INFO     | executing command: cat /etc/os-release
[2025-11-26 13:58:43] 2025-11-26 18:58:12,820 | INFO     | cat /etc/os-release:
[2025-11-26 13:58:43] NAME="CentOS Linux"
[2025-11-26 13:58:43] VERSION="7 (Core)"
[2025-11-26 13:58:43] ID="centos"
[2025-11-26 13:58:43] ID_LIKE="rhel fedora"
[2025-11-26 13:58:43] VERSION_ID="7"
[2025-11-26 13:58:43] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 13:58:43] ANSI_COLOR="0;31"
[2025-11-26 13:58:43] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 13:58:43] HOME_URL="https://www.centos.org/"
[2025-11-26 13:58:43] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 13:58:43] 
[2025-11-26 13:58:43] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 13:58:43] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 13:58:43] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 13:58:43] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 13:58:43] 
[2025-11-26 13:58:43] 2025-11-26 18:58:12,821 | INFO     | ***************************************
[2025-11-26 13:58:43] 2025-11-26 18:58:13,322 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-26 13:58:43] 2025-11-26 18:58:13,338 | INFO     | sufficient remaining disk space (28240248832 B)
[2025-11-26 13:58:43] 2025-11-26 18:58:13,338 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 13:58:43] 2025-11-26 18:58:13,339 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 13:58:43] 2025-11-26 18:58:13,339 | INFO     | update_server=False
[2025-11-26 13:58:43] 2025-11-26 18:58:13,339 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 13:58:43] 2025-11-26 18:58:13,339 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 13:58:43] 2025-11-26 18:58:13,340 | INFO     | aborting loop
[2025-11-26 13:58:43] 2025-11-26 18:58:13,832 | INFO     | all payload control threads have been joined
[2025-11-26 13:58:43] 2025-11-26 18:58:13,911 | INFO     | all job control threads have been joined
[2025-11-26 13:58:43] 2025-11-26 18:58:14,110 | INFO     | all data control threads have been joined
[2025-11-26 13:58:43] 2025-11-26 18:58:14,344 | INFO     | [job] retrieve thread has finished
[2025-11-26 13:58:43] 2025-11-26 18:58:14,345 | INFO     | [job] job monitor thread has finished
[2025-11-26 13:58:43] 2025-11-26 18:58:14,370 | INFO     | [job] validate thread has finished
[2025-11-26 13:58:43] 2025-11-26 18:58:14,528 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 13:58:43] 2025-11-26 18:58:14,773 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 13:58:43] 2025-11-26 18:58:14,831 | INFO     | [data] copytool_in thread has finished
[2025-11-26 13:58:43] 2025-11-26 18:58:14,838 | INFO     | [payload] control thread has finished
[2025-11-26 13:58:43] 2025-11-26 18:58:14,916 | INFO     | [job] control thread has finished
[2025-11-26 13:58:43] 2025-11-26 18:58:15,115 | INFO     | [data] control thread has finished
[2025-11-26 13:58:43] 2025-11-26 18:58:15,158 | INFO     | [payload] validate_post thread has finished
[2025-11-26 13:58:43] 2025-11-26 18:58:15,376 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 13:58:43] 2025-11-26 18:58:15,603 | INFO     | [payload] failed_post thread has finished
[2025-11-26 13:58:43] 2025-11-26 18:58:15,626 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 13:58:43] 2025-11-26 18:58:15,778 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 13:58:43] 2025-11-26 18:58:16,191 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 13:58:43] 2025-11-26 18:58:16,722 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 13:58:43] 2025-11-26 18:58:16,777 | INFO     | [data] copytool_out thread has finished
[2025-11-26 13:58:43] 2025-11-26 18:58:17,196 | INFO     | [job] queue monitor thread has finished
[2025-11-26 13:58:43] 2025-11-26 18:58:20,728 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 13:58:43] 2025-11-26 18:58:21,065 | INFO     | [monitor] cgroup control has ended
[2025-11-26 13:58:43] 2025-11-26 18:58:23,138 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139803252291392)>', '<ExcThread(monitor, started 139802955458304)>']
[2025-11-26 13:58:43] 2025-11-26 18:58:28,154 | INFO     | all workflow threads have been joined
[2025-11-26 13:58:43] 2025-11-26 18:58:28,154 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 13:58:43] 2025-11-26 18:58:28,157 | INFO     | traces error code: 0
[2025-11-26 13:58:43] 2025-11-26 18:58:28,158 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 13:58:43] 2025-11-26 18:58:43,139 | INFO     | PID=7787 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-26 13:58:43] 2025-11-26 18:58:43,140 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 13:58:43] 2025-11-26 18:58:43,140 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 13:58:43] 2025-11-26 18:58:43,140 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 13:58:43] 2025-11-26 18:58:43,140 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 13:58:43] 2025-11-26 18:58:43,140 | INFO     | [monitor] control thread has ended
[2025-11-26 13:58:43] 2025-11-26 18:58:43,224 [wrapper] ==== pilot stdout END ====
[2025-11-26 13:58:43] 2025-11-26 18:58:43,228 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 13:58:43] 2025-11-26 18:58:43,231 [wrapper] pilotpid: 7787
[2025-11-26 13:58:43] 2025-11-26 18:58:43,235 [wrapper] Pilot exit status: 0
[2025-11-26 13:58:43] 2025-11-26 18:58:43,250 [wrapper] pandaids: 6891588205
[2025-11-26 13:58:43] 2025-11-26 18:58:43,286 [wrapper] cleanup supervisor_pilot  1397 7788
[2025-11-26 13:58:43] 2025-11-26 18:58:43,290 [wrapper] Test setup, not cleaning
[2025-11-26 13:58:43] 2025-11-26 18:58:43,293 [wrapper] apfmon messages muted
[2025-11-26 13:58:43] 2025-11-26 18:58:43,297 [wrapper] ==== wrapper stdout END ====
[2025-11-26 13:58:43] 2025-11-26 18:58:43,301 [wrapper] ==== wrapper stderr END ====
[2025-11-26 13:58:43]  *** Error codes and diagnostics ***
[2025-11-26 13:58:43]     "exeErrorCode": 0,
[2025-11-26 13:58:43]     "exeErrorDiag": "",
[2025-11-26 13:58:43]     "pilotErrorCode": 0,
[2025-11-26 13:58:43]     "pilotErrorDiag": "",
[2025-11-26 13:58:43]  *** Listing of results directory ***
[2025-11-26 13:58:43] total 1319428
[2025-11-26 13:58:43] -rw-r--r-- 1 boincer umatlas    576529 Nov 18 12:24 pilot3.tar.gz
[2025-11-26 13:58:43] -rw-r--r-- 1 boincer umatlas      5112 Nov 18 12:39 queuedata.json
[2025-11-26 13:58:43] -rwx------ 1 boincer umatlas     36292 Nov 18 12:40 runpilot2-wrapper.sh
[2025-11-26 13:58:43] -rw-r--r-- 1 boincer umatlas       100 Nov 26 06:40 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 13:58:43] -rwxr-xr-x 1 boincer umatlas      7986 Nov 26 06:40 run_atlas
[2025-11-26 13:58:43] -rw-r--r-- 1 boincer umatlas       105 Nov 26 06:40 job.xml
[2025-11-26 13:58:43] -rw-r--r-- 2 boincer umatlas 410156869 Nov 26 06:40 EVNT.47493065._000514.pool.root.1
[2025-11-26 13:58:43] -rw-r--r-- 2 boincer umatlas     15120 Nov 26 06:40 start_atlas.sh
[2025-11-26 13:58:43] drwxrwx--x 2 boincer umatlas      4096 Nov 26 06:40 shared
[2025-11-26 13:58:43] -rw-r--r-- 2 boincer umatlas    590099 Nov 26 06:40 input.tar.gz
[2025-11-26 13:58:43] -rw-r--r-- 1 boincer umatlas         0 Nov 26 06:40 boinc_lockfile
[2025-11-26 13:58:43] -rw-r--r-- 1 boincer umatlas      2773 Nov 26 06:40 pandaJob.out
[2025-11-26 13:58:43] -rw------- 1 boincer umatlas    991830 Nov 26 06:40 agis_schedconf.cvmfs.json
[2025-11-26 13:58:43] drwx------ 5 boincer umatlas      4096 Nov 26 06:40 pilot3
[2025-11-26 13:58:43] -rw-r--r-- 1 boincer umatlas       532 Nov 26 13:48 boinc_task_state.xml
[2025-11-26 13:58:43] -rw------- 1 boincer umatlas 925331834 Nov 26 13:57 HITS.47493068._005133.pool.root.1
[2025-11-26 13:58:43] -rw-r--r-- 1 boincer umatlas      5956 Nov 26 13:57 init_data.xml
[2025-11-26 13:58:43] -rw------- 1 boincer umatlas      1064 Nov 26 13:57 memory_monitor_summary.json
[2025-11-26 13:58:43] -rw------- 1 boincer umatlas        95 Nov 26 13:57 pilot_heartbeat.json
[2025-11-26 13:58:43] -rw------- 1 boincer umatlas   1516240 Nov 26 13:58 agis_ddmendpoints.agis.ALL.json
[2025-11-26 13:58:43] -rw------- 1 boincer umatlas   2176149 Nov 26 13:58 log.47493068._005133.job.log.tgz.1
[2025-11-26 13:58:43] -rw------- 1 boincer umatlas      8665 Nov 26 13:58 heartbeat.json
[2025-11-26 13:58:43] -rw-r--r-- 1 boincer umatlas      8192 Nov 26 13:58 boinc_mmap_file
[2025-11-26 13:58:43] -rw-r--r-- 1 boincer umatlas        29 Nov 26 13:58 wrapper_checkpoint.txt
[2025-11-26 13:58:43] -rw------- 1 boincer umatlas       744 Nov 26 13:58 pilotlog.txt
[2025-11-26 13:58:43] -rw------- 1 boincer umatlas   3668685 Nov 26 13:58 log.47493068._005133.job.log.1
[2025-11-26 13:58:43] -rw------- 1 boincer umatlas       353 Nov 26 13:58 output.list
[2025-11-26 13:58:43] -rw-r--r-- 1 boincer umatlas       620 Nov 26 13:58 runtime_log
[2025-11-26 13:58:43] -rw------- 1 boincer umatlas   5867520 Nov 26 13:58 result.tar.gz
[2025-11-26 13:58:43] -rw-r--r-- 1 boincer umatlas      8706 Nov 26 13:58 runtime_log.err
[2025-11-26 13:58:43] -rw------- 1 boincer umatlas       670 Nov 26 13:58 NqkKDmaref8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmZbFKDmSUhwTo.diag
[2025-11-26 13:58:43] -rw-r--r-- 1 boincer umatlas     21411 Nov 26 13:58 stderr.txt
[2025-11-26 13:58:43] HITS file was successfully produced:
[2025-11-26 13:58:43] -rw------- 1 boincer umatlas 925331834 Nov 26 13:57 shared/HITS.pool.root.1
[2025-11-26 13:58:43]  *** Contents of shared directory: ***
[2025-11-26 13:58:43] total 1310524
[2025-11-26 13:58:43] -rw-r--r-- 2 boincer umatlas 410156869 Nov 26 06:40 ATLAS.root_0
[2025-11-26 13:58:43] -rw-r--r-- 2 boincer umatlas     15120 Nov 26 06:40 start_atlas.sh
[2025-11-26 13:58:43] -rw-r--r-- 2 boincer umatlas    590099 Nov 26 06:40 input.tar.gz
[2025-11-26 13:58:43] -rw------- 1 boincer umatlas 925331834 Nov 26 13:57 HITS.pool.root.1
[2025-11-26 13:58:43] -rw------- 1 boincer umatlas   5867520 Nov 26 13:58 result.tar.gz
13:58:44 (4106): run_atlas exited; CPU time 292497.791965
13:58:44 (4106): called boinc_finish(0)

</stderr_txt>
]]>

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